ChEBI-get_synonyms

Created: 2007-11-19 13:45:42 Last updated: 2007-11-19 13:54:44

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This workflow takes a list of entity names separated by a newline and queries the ChEBI database for synonyms. Thanks to Paul Fisher for resolving the problems with the XML Splitter by using an XPath statement to retrieve synonyms.

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Workflow Components

Inputs (1)

Name	Description
search_list

Processors (14)

Name	Type	Description
String_Constant	stringconstant
XPath_From_Text	local
xpath	stringconstant
merge	local
parametersXML1	local
returnXML1	local
resultXML1	local
returnXML	local
parametersXML	local
getLiteEntity	arbitrarywsdl
split_search_list	local
String_Constant1	stringconstant
resultXML	local
getCompleteEntity	arbitrarywsdl

Beanshells (0)

Outputs (1)

Name	Description
synonyms

Links (15)

Source	Sink
String_Constant:value	parametersXML1:searchCategory
XPath_From_Text:nodelist	merge:stringlist
getCompleteEntity:result	resultXML:input
getLiteEntity:result	resultXML1:input
parametersXML1:output	getLiteEntity:parameters
parametersXML:output	getCompleteEntity:parameters
resultXML1:return	returnXML:input
resultXML:return	XPath_From_Text:xml-text
returnXML1:chebiId	parametersXML:chebiId
returnXML:return	returnXML1:input
search_list	split_search_list:string
String_Constant1:value	split_search_list:regex
merge:concatenated	synonyms
split_search_list:split	parametersXML1:search
xpath:value	XPath_From_Text:xpath

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Information Workflow Type

Taverna 1

Information Uploader

Sirisha Gollapudi

Information License

All versions of this Workflow are licensed under:

Information Version 1 (earliest) (of 2)

Information Credits (1)

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Sirisha Gollapudi

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None

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Information Statistics

2231 viewings

2082 downloads

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Citations (0)

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Version History

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ChEBI-get_synonyms

Created by Sirisha Gollapudi on Monday 19 November 2007 13:45:42 (UTC)
ChEBI-get_synonyms

Created by Sirisha Gollapudi on Monday 19 November 2007 13:45:42 (UTC)

Last edited by Sirisha Gollapudi on Monday 19 November 2007 13:54:44 (UTC)