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G-language Genome Analysis Environment - GC skew analysis (AT skew)

Created: 2010-04-05 06:17:25      Last updated: 2011-01-09 06:08:19

This workflow calculates and graphs the AT skew of a given genome sequence, using options of gcskew program. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.

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Taverna 2

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1619?size=60x60 Jp cory (Kazuki Oshita)

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3337 viewings

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Version History

In chronological order:

  1. G-language Genome Analysis Environment - GC skew analysis (AT skew)

    Created by cory (Kazuki Oshita) on Saturday 27 June 2009 09:19:10 (UTC)

    Last edited by cory (Kazuki Oshita) on Wednesday 06 February 2013 16:23:51 (UTC)

  2. G-language Genome Analysis Environment - GC skew analysis (AT skew)

    Created by cory (Kazuki Oshita) on Monday 05 April 2010 06:17:25 (UTC)

    Revision comment:

    Corresponding to a new version of G-language SOAP service.

  3. G-language Genome Analysis Environment - GC skew analysis (AT skew)

    Created by cory (Kazuki Oshita) on Sunday 09 January 2011 06:06:03 (UTC)

    Last edited by cory (Kazuki Oshita) on Sunday 09 January 2011 06:08:19 (UTC)



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Workflow Other workflows that use similar services (10)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.


Taverna 2
Uploader
1619?size=60x60 Jp cory (Kazuki Oshita)

Workflow G-language Genome Analysis Environment - B... (2)

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Given an identifier for genome sequence (by default, genome of Mycoplasma genitalium: refseq:NC_000908) or raw sequence data in FASTA format, this workflow calculates and graphs the following properties using the G-language Genome Analysis Environment: GC skew (gcskew), cumulative GC skew (gcskew_cumulative), GC skew of coding/intergenic/GC3 (genomicskew), GC content with sliding windows (gcwin), replication origin and terminus (find_ori_ter), codon usage table (codon_usage), the Codon Adapta...

Created: 2010-04-05 | Last updated: 2010-04-05

Credits: User cory (Kazuki Oshita)

Taverna 2
Uploader
1619?size=60x60 Jp cory (Kazuki Oshita)

Workflow G-language Genome Analysis Environment - B... (2)

Thumb
Given a numerical vector (array), this workflow calculates the maximum value (max) and its index (maxdex), minumum value (min) and its index (mindex), mean, sum, median, and standard deviation. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.

Created: 2010-04-05

Credits: User cory (Kazuki Oshita)

Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
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