DataBiNS with Kegg ID
Created: 2009-07-09 21:39:54
Last updated: 2010-11-22 23:16:42
Download WorkflowConsumes a KEGG gene id and mines for pathway, GO, PubMed and SNP information about that gene
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Workflow Components
Authors (2)
| Fong Chun Chan, edited by Mark Wilkinson with the help of Edward Kawas and David Withers |
Titles (1)
| DataBiNS with Kegg ID |
Descriptions (2)
| Consumes a KEGG gene id and mines for pathway, GO, PubMed and SNP information about that gene |
Dependencies (0)
None
Inputs (1)
| Name | Description |
|---|---|
| id | This is a gene identifer in KEGG gene-id format |
Processors (56)
| Name | Type | Description |
|---|---|---|
| Remove_duplicate_strings2 | localworker |
ScriptList strippedlist = new ArrayList();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
String item = (String) i.next();
if (strippedlist.contains(item) == false) {
strippedlist.add(item);
}
}
|
| nsSNP_amino_acid_variant_list_flatter | localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| nsSNP_allele_list_flatter | localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| pdb_file_flatter | localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| base64_PNG | localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| go_term_list_flatter | beanshell |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 2); |
| publication_pubmed_id_list_flatter | beanshell |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 2); |
| frequency_list_flatter | localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| gene_name_list_flatter | beanshell |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| KEGG_NS | stringconstant |
ValueKEGG |
| Entrez_NS | stringconstant |
ValueEntrezGene_EntrezGeneID |
| article_name | stringconstant |
Valueidentifier |
| publication_journal_name_list_flatter | beanshell |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 2); |
| go_term_definition_list_flatter | beanshell |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 2); |
| Remove_duplicate_strings | localworker |
ScriptList strippedlist = new ArrayList();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
String item = (String) i.next();
if (strippedlist.contains(item) == false) {
strippedlist.add(item);
}
}
|
| frequency_id_list_flatter | localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| entrez_gene_id_list_flatter | localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| gene_description_list_flatter | localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| nsSNP_codon_position_list_flatter | localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| gene_id_list_flatter | localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| gene_summary_list_flatter | beanshell |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| publication_abstract_list_flatter | beanshell |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 2); |
| nsSNP_id_list_flatter | localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| entrez_gene_list_flatter2 | localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| nsSNP_strand_list_flatter | localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| go_term_accession_list_flatter | beanshell |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 2); |
| publication_title_list_flatter | beanshell |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 2); |
| nsSNP_amino_acid_position_list_flatter | localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| pdb_rasmol_flatter | localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| gene_synonyms_list_flatter | beanshell |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| publication_author_list_flatter | beanshell |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 2); |
| pdb_id_flatter | localworker |
Scriptflatten(inputs, outputs, depth) {
for (i = inputs.iterator(); i.hasNext();) {
element = i.next();
if (element instanceof Collection && depth > 0) {
flatten(element, outputs, depth - 1);
} else {
outputs.add(element);
}
}
}
outputlist = new ArrayList();
flatten(inputlist, outputlist, 1); |
| Parse_Moby_Data_Swiss_Prot | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.pl |
| Parse_Moby_Data_GO_Term | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.pl |
| Parse_Moby_Data_entrez_gene | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.pl |
| getBase64SnpFrequencyImage | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service NamegetBase64SnpFrequencyImageBiomoby Authority Namebioinfo.icapture.ubc.caBiomoby Categorymoby |
| Parse_Moby_Data_nsSNP | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.pl |
| convertSnp2EntrezGeneID | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service NameconvertSnp2EntrezGeneIDBiomoby Authority Namebioinfo.icapture.ubc.caBiomoby Categorymoby |
| Parse_Moby_Data_Publication | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.pl |
| snp2Frequencies | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service Namesnp2FrequenciesBiomoby Authority Namebioinfo.icapture.ubc.caBiomoby Categorymoby |
| getGeneInformationByEntrezGeneID | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service NamegetGeneInformationByEntrezGeneIDBiomoby Authority Namebioinfo.icapture.ubc.caBiomoby Categorymoby |
| getEntryFromPDB | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service NamegetEntryFromPDBBiomoby Authority Namewww.rcsb.orgBiomoby Categorymoby |
| Gene2PubMed | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service NameGene2PubMedBiomoby Authority Nameicapture.ubc.caBiomoby Categorymoby |
| convertKeggGeneId2ProtId | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service NameconvertKeggGeneId2ProtIdBiomoby Authority Namebioinfo.icapture.ubc.caBiomoby Categorymoby |
| Parse_Moby_Data_Frequencies | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.pl |
| Parse_Moby_Data_gene_ref | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.pl |
| getSnpsBySwissProtId | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service NamegetSnpsBySwissProtIdBiomoby Authority Namebioinfo.icapture.ubc.caBiomoby Categorymoby |
| Parse_Moby_Data_rasmol | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.pl |
| PDB_id2RasMolScript | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service NamePDB_id2RasMolScriptBiomoby Authority Namebioinfo.icapture.ubc.caBiomoby Categorymoby |
| Gene2Ontology | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service NameGene2OntologyBiomoby Authority Nameicapture.ubc.caBiomoby Categorymoby |
| CreateKeggId | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service NameObjectBiomoby Authority Name |
| CreateEntrezGeneDataType | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service NameObjectBiomoby Authority Name |
| ExtractPdbEntry | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.pl |
| Parse_Moby_Data_b64_Encoded_PNG | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.pl |
| convertUniProtId2PDBId | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.plBiomoby Service NameconvertUniProtId2PDBIdBiomoby Authority Namebioinfo.icapture.ubc.caBiomoby Category |
| Parse Moby Data(Object) | biomoby |
Endpointhttp://moby.ucalgary.ca/moby/MOBY-Central.pl |
Beanshells (11)
| Name | Description | Inputs | Outputs |
|---|---|---|---|
| go_term_list_flatter | inputlist | outputlist | |
| publication_pubmed_id_list_flatter | inputlist | outputlist | |
| gene_name_list_flatter | inputlist | outputlist | |
| publication_journal_name_list_flatter | inputlist | outputlist | |
| go_term_definition_list_flatter | inputlist | outputlist | |
| gene_summary_list_flatter | inputlist | outputlist | |
| publication_abstract_list_flatter | inputlist | outputlist | |
| go_term_accession_list_flatter | inputlist | outputlist | |
| publication_title_list_flatter | inputlist | outputlist | |
| gene_synonyms_list_flatter | inputlist | outputlist | |
| publication_author_list_flatter | inputlist | outputlist |
Outputs (28)
| Name | Description |
|---|---|
| nsSNP_id | |
| nsSNP_codon_position | |
| nsSNP_allele | |
| nsSNP_strand | |
| nsSNP_amino_acid_variant | |
| nsSNP_amino_acid_position | |
| swiss_prot_id | |
| go_term_accession | |
| go_term | |
| go_term_definition | |
| frequency | |
| frequency_id | |
| gene_id | |
| gene_description | |
| gene_name | |
| gene_summary | |
| gene_synonyms | |
| entrez_gene_id | |
| publication_author | |
| publication_pubmed_id | |
| publication_abstract | |
| publication_title | |
| publication_journal_name | |
| kegg_gene_id | |
| pdb_id | |
| pdb_rasmol | |
| base64_PNG | |
| pdb_file |
Datalinks (84)
| Source | Sink |
|---|---|
| entrez_gene_id_list_flatter:outputlist | Remove_duplicate_strings2:stringlist |
| Parse_Moby_Data_nsSNP:snps_'aa_var' | nsSNP_amino_acid_variant_list_flatter:inputlist |
| Parse_Moby_Data_nsSNP:snps_'allele' | nsSNP_allele_list_flatter:inputlist |
| ExtractPdbEntry:entry_'content' | pdb_file_flatter:inputlist |
| Parse_Moby_Data_b64_Encoded_PNG:image_'content' | base64_PNG:inputlist |
| Parse_Moby_Data_GO_Term:terms_'Term' | go_term_list_flatter:inputlist |
| Parse_Moby_Data_Publication:id | publication_pubmed_id_list_flatter:inputlist |
| Parse_Moby_Data_Frequencies:Frequencies_'Frequency' | frequency_list_flatter:inputlist |
| Parse_Moby_Data_gene_ref:gene_info_'name' | gene_name_list_flatter:inputlist |
| Parse_Moby_Data_Publication:publications_'Journal' | publication_journal_name_list_flatter:inputlist |
| Parse_Moby_Data_GO_Term:terms_'Definition' | go_term_definition_list_flatter:inputlist |
| entrez_gene_list_flatter2:outputlist | Remove_duplicate_strings:stringlist |
| Parse_Moby_Data_Frequencies:id | frequency_id_list_flatter:inputlist |
| Parse_Moby_Data_entrez_gene:id | entrez_gene_id_list_flatter:inputlist |
| Parse_Moby_Data_gene_ref:gene_info_'description' | gene_description_list_flatter:inputlist |
| Parse_Moby_Data_nsSNP:snps_'codon_pos' | nsSNP_codon_position_list_flatter:inputlist |
| Parse_Moby_Data_gene_ref:id | gene_id_list_flatter:inputlist |
| Parse_Moby_Data_gene_ref:gene_info_'summary' | gene_summary_list_flatter:inputlist |
| Parse_Moby_Data_Publication:publications_'Abstract' | publication_abstract_list_flatter:inputlist |
| Parse_Moby_Data_nsSNP:id | nsSNP_id_list_flatter:inputlist |
| Parse_Moby_Data_entrez_gene:id | entrez_gene_list_flatter2:inputlist |
| Parse_Moby_Data_nsSNP:snps_'strand' | nsSNP_strand_list_flatter:inputlist |
| Parse_Moby_Data_GO_Term:id | go_term_accession_list_flatter:inputlist |
| Parse_Moby_Data_Publication:publications_'Title' | publication_title_list_flatter:inputlist |
| Parse_Moby_Data_nsSNP:snps_'aa_pos' | nsSNP_amino_acid_position_list_flatter:inputlist |
| Parse_Moby_Data_rasmol:rasmol_text_'content' | pdb_rasmol_flatter:inputlist |
| Parse_Moby_Data_gene_ref:gene_info_'synonyms' | gene_synonyms_list_flatter:inputlist |
| Parse_Moby_Data_Publication:publications_'Author' | publication_author_list_flatter:inputlist |
| Parse Moby Data(Object):id | pdb_id_flatter:inputlist |
| convertKeggGeneId2ProtId:Object(prot_id) | Parse_Moby_Data_Swiss_Prot:mobyData('Object') |
| Gene2Ontology:GO_Term(Collection - 'terms' As Simples) | Parse_Moby_Data_GO_Term:mobyData('GO_Term') |
| convertSnp2EntrezGeneID:Object(geneid) | Parse_Moby_Data_entrez_gene:mobyData('Object') |
| snp2Frequencies:Frequencies(Frequencies) | getBase64SnpFrequencyImage:Object(snpId) |
| getSnpsBySwissProtId:nsSNP(Collection - 'snps' As Simples) | Parse_Moby_Data_nsSNP:mobyData('nsSNP') |
| getSnpsBySwissProtId:nsSNP(Collection - 'snps' As Simples) | convertSnp2EntrezGeneID:Object(snp) |
| Gene2PubMed:Publication(Collection - 'publications' As Simples) | Parse_Moby_Data_Publication:mobyData('Publication') |
| getSnpsBySwissProtId:nsSNP(Collection - 'snps' As Simples) | snp2Frequencies:Object(snpid) |
| CreateEntrezGeneDataType:mobyData | getGeneInformationByEntrezGeneID:Object(geneid) |
| PDB_id2RasMolScript:text-formatted(rasmol_text) | getEntryFromPDB:Object(id) |
| CreateEntrezGeneDataType:mobyData | Gene2PubMed:Object(geneid) |
| CreateKeggId:mobyData | convertKeggGeneId2ProtId:Object(kegg_gene) |
| snp2Frequencies:Frequencies(Frequencies) | Parse_Moby_Data_Frequencies:mobyData('Frequencies') |
| getGeneInformationByEntrezGeneID:gene_ref(gene_info) | Parse_Moby_Data_gene_ref:mobyData('gene_ref') |
| convertKeggGeneId2ProtId:Object(prot_id) | getSnpsBySwissProtId:Object(id) |
| PDB_id2RasMolScript:text-formatted(rasmol_text) | Parse_Moby_Data_rasmol:mobyData('text-formatted') |
| convertUniProtId2PDBId:Object(Collection - 'pdb_ids') | PDB_id2RasMolScript:Object(pdb_id) |
| CreateEntrezGeneDataType:mobyData | Gene2Ontology:Object(gene) |
| KEGG_NS:value | CreateKeggId:namespace |
| article_name:value | CreateKeggId:article name |
| id | CreateKeggId:id |
| Entrez_NS:value | CreateEntrezGeneDataType:namespace |
| Remove_duplicate_strings:strippedlist | CreateEntrezGeneDataType:id |
| getEntryFromPDB:PDB-Text(entry) | ExtractPdbEntry:mobyData('PDB-Text') |
| getBase64SnpFrequencyImage:b64_Encoded_PNG(image) | Parse_Moby_Data_b64_Encoded_PNG:mobyData('b64_Encoded_PNG') |
| convertKeggGeneId2ProtId:Object(prot_id) | convertUniProtId2PDBId:Object(kegg_gene) |
| convertUniProtId2PDBId:Object(Collection - 'pdb_ids' As Simples) | Parse Moby Data(Object):mobyData('Object') |
| nsSNP_id_list_flatter:outputlist | nsSNP_id |
| nsSNP_codon_position_list_flatter:outputlist | nsSNP_codon_position |
| nsSNP_allele_list_flatter:outputlist | nsSNP_allele |
| nsSNP_strand_list_flatter:outputlist | nsSNP_strand |
| nsSNP_amino_acid_variant_list_flatter:outputlist | nsSNP_amino_acid_variant |
| nsSNP_amino_acid_position_list_flatter:outputlist | nsSNP_amino_acid_position |
| Parse_Moby_Data_Swiss_Prot:id | swiss_prot_id |
| go_term_accession_list_flatter:outputlist | go_term_accession |
| go_term_list_flatter:outputlist | go_term |
| go_term_definition_list_flatter:outputlist | go_term_definition |
| frequency_list_flatter:outputlist | frequency |
| frequency_id_list_flatter:outputlist | frequency_id |
| gene_id_list_flatter:outputlist | gene_id |
| gene_description_list_flatter:outputlist | gene_description |
| gene_name_list_flatter:outputlist | gene_name |
| gene_summary_list_flatter:outputlist | gene_summary |
| gene_synonyms_list_flatter:outputlist | gene_synonyms |
| Remove_duplicate_strings2:strippedlist | entrez_gene_id |
| publication_author_list_flatter:outputlist | publication_author |
| publication_pubmed_id_list_flatter:outputlist | publication_pubmed_id |
| publication_abstract_list_flatter:outputlist | publication_abstract |
| publication_title_list_flatter:outputlist | publication_title |
| publication_journal_name_list_flatter:outputlist | publication_journal_name |
| id | kegg_gene_id |
| pdb_id_flatter:outputlist | pdb_id |
| pdb_rasmol_flatter:outputlist | pdb_rasmol |
| base64_PNG:outputlist | base64_PNG |
| pdb_file_flatter:outputlist | pdb_file |
Coordinations (0)
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Workflow Type
Version 3 (latest)
(of 3)
- information
- |
- nssnp
- |
- nucleotide
- |
- OMIM
- |
- pathway
- |
- snp
- |
- structure
- |
- workflow
- information
- |
- nssnp
- |
- nucleotide
- |
- OMIM
- |
- pathway
- |
- snp
- |
- structure
- |
- workflow
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Version History
In chronological order:
-
Created by Mark Wilkinson on Tuesday 19 May 2009 18:25:40 (UTC)
Last edited by Mark Wilkinson on Wednesday 06 February 2013 16:23:49 (UTC)
-
Created by Mark Wilkinson on Thursday 09 July 2009 21:39:54 (UTC)
Last edited by Mark Wilkinson on Monday 22 November 2010 23:15:14 (UTC)
Revision comment:Previous workflow was not properly flattening some of the PubMed information, so it never made it into the output bin. This version is also properly annotated with an example input.
-
Created by Mark Wilkinson on Monday 22 November 2010 23:16:38 (UTC)
Revision comment:switched default input suggestion to a new valid KEGG gene Identifier (previous one didn't return hits in all cases)
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