snpNeighbours

Created: 2009-05-14 21:03:25 Last updated: 2009-05-14 21:11:54

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My first Taverna workflow: the input is the SNP "rs25". The Web Services invoked finds its position on the human genome and find its neighbours at 100bp. The XML result is then saved to a local file. The web services used here are under developpement and might be turned off in a near future.

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http://www.myexperiment.org/workflows/757/download?version=1
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Workflow Components

Inputs (0)

Processors (11)

Name	Type	Description
getSNPByName	arbitrarywsdl
rs25	stringconstant
transformInput	local
extractRS	local
SnpDescriptorListXML	local
getSNPByPosition	arbitrarywsdl
input	local
ExtendRange	beanshell
Extension	stringconstant
Write_Text_File	local
FileNameOut	stringconstant

Beanshells (1)

Name	Description	Inputs	Outputs
ExtendRange		position extend	left right

Outputs (0)

Links (12)

Source	Sink
ExtendRange:left	input:start
ExtendRange:right	input:end
Extension:value	ExtendRange:extend
FileNameOut:value	Write_Text_File:outputFile
SnpDescriptorListXML:chromosome	input:chromosome
SnpDescriptorListXML:position	ExtendRange:position
extractRS:SnpDescriptorList	SnpDescriptorListXML:input
getSNPByName:parameters	extractRS:input
getSNPByPosition:parameters	Write_Text_File:filecontents
input:output	getSNPByPosition:parameters
rs25:value	transformInput:rsNumber
transformInput:output	getSNPByName:parameters