Bio2RDF: Rdfiser for Bind protein interaction.

Created: 2009-02-19 05:10:23 Last updated: 2009-02-19 05:24:29

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CONSTRUCT{ <bmuri>, ?p, ?o . }
FROM <http://soap.bind.ca/wsdl/bind.wsdl>
WHERE { <bmuri>, ?p, ?o . }

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Workflow Components

Authors (1)

Titles (2)

Descriptions (0)

Dependencies (0)

Inputs (1)

Name	Description
bind_bmuri

Processors (7)

Name	Type	Description
bind_bmuri_for_test	stringconstant	Value urn:bm:bind:194821
gipair	stringconstant	Value gipair
idSearch	wsdl	Wsdl http://soap.bind.ca/wsdl/bind.wsdl Wsdl Operation idSearch
bindid	stringconstant	Value bindid
Split_bmuri	beanshell	Script string = new String(bmuri); string = string.substring(7, string.length()); int i = string.lastIndexOf(":"); int j = string.length(); namespace = string.substring(0, i); id = string.substring(i+1, j); namespace_id = namespace + ":" + id;
idSearch_searchResultBean	xmlsplitter
Bind_rdfiser	beanshell	Script String[] result = string.split("\n"); String string2 = result[1]; String[] result2 = string2.split(","); String uri = " "; String nsid = "bind:"+result2[0]; String title = result2[1].replace("\"","") + " -> " + result2[6].replace("\"","") + ", " + result2[5]; String triples = uri + " .\n"; triples = triples + uri + " \"" + title + " [" + nsid + "]\" .\n"; triples = triples + uri + " \"" + title + "\" .\n"; triples = triples + uri + " \"" + nsid + "\" .\n"; triples = triples + uri + " \"http://bio2rdf.org/html/"+nsid+"\" .\n"; triples = triples + uri + " .\n"; triples = triples + uri + " .\n"; triples = triples + uri + " .\n"; triples = triples + uri + " .\n"; triples = triples + uri + " .\n"; triples = triples + uri + " .\n"; triples = triples + uri + " .\n"; triples = triples + uri + " .\n"; triples = triples + uri + " .\n";

Beanshells (2)

Name	Description	Inputs	Outputs
Split_bmuri		bmuri	id
Bind_rdfiser		string	triples

Outputs (1)

Name	Description
bind_triples

Datalinks (7)

Source	Sink
gipair:value	idSearch:returnType
Split_bmuri:id	idSearch:id
bindid:value	idSearch:idType
bind_bmuri	Split_bmuri:bmuri
idSearch:searchResultBean	idSearch_searchResultBean:input
idSearch_searchResultBean:records	Bind_rdfiser:string
Bind_rdfiser:triples	bind_triples

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Francois Belleau

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

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Francois Belleau

Information Attributions (0)

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None

Information Tags (6)

Uploader tags

bind
|
bio2rdf
|
database
|
protein
|
rdf
|
rdfiser

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Information Favourited By (0)

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Information Statistics

2347 viewings

2167 downloads

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Citations (0)

None

Version History

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Bio2RDF: Rdfiser for Bind protein interaction.

Created by Francois Belleau on Thursday 19 February 2009 05:10:23 (UTC)

Last edited by Francois Belleau on Thursday 19 February 2009 05:24:30 (UTC)