Bio2rdf: Bind search, rdfise and load demo

Created: 2009-02-19 05:07:30 Last updated: 2009-02-19 05:39:51

Download Workflow

INSERT IN GRAPH <http://localhost/sesame/mem_rdf_db> {
   CONSTRUCT { ?s, ?p, ?o . }
   FROM <http://soap.bind.ca/wsdl/bind.wsdl>
   WHERE {
       SELECT ?s
       FROM <http://soap.bind.ca/wsdl/bind.wsdl>
       WHERE {
            ?s, ?p, ?o .
           FILTER ( regex(?o, "query")) .
   }
   , ?p, ?o . }
}

Preview

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://myexperiment.org/workflows/654/download?version=1
[ More Info Expand ]

Workflow Components

Authors (1)

Titles (3)

Descriptions (2)

Dependencies (0)

Inputs (0)

Processors (8)

Name	Type	Description
genes_list	stringconstant	Value akt1s1,bad,bcl2l11,cdc25c,gab1,grb7
Split_string_into_string_list	localworker	Script List split = new ArrayList(); if (!string.equals("")) { String regexString = ","; if (regex != void) { regexString = regex; } String[] result = string.split(regexString); for (int i = 0; i < result.length; i++) { split.add(result[i]); } }
Bind_search	workflow
Bind_describe	workflow
Sesame_upload_triples	workflow
mem_rdf_db	stringconstant	Value mem-rdf-db
from_bind	stringconstant	Value bind:
akt1s1	stringconstant	Value akt1s1

Beanshells (6)

Name	Inputs	Outputs
Split_bmuri	bmuri	id
Bind_rdfiser	string	triples
Sesame_upload_triples	triples repository input_format	html
Split_string_into_string_list	string	split
Filter_list_of_strings_extracting_msg	stringlist	filteredlist
Concatenate_two_strings	string1 string2	output

Outputs (3)

Name	Description
o1
o2
o3

Datalinks (9)

Source	Sink
genes_list:value	Split_string_into_string_list:string
Split_string_into_string_list:split	Bind_search:query
Bind_search:bind_bmuris	Bind_describe:bind_bmuri
mem_rdf_db:value	Sesame_upload_triples:repository
Bind_describe:bind_triples	Sesame_upload_triples:triples
from_bind:value	Sesame_upload_triples:bmuri
Bind_search:bind_bmuris	o1
Bind_search:result_count	o2
Sesame_upload_triples:number_of_uploaded_triples	o3

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Francois Belleau

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Francois Belleau

Information Attributions (0)

(Workflows/Files)

None

Information Tags (4)

Uploader tags

bind
|
bio2rdf
|
demo
|
search

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

2328 viewings

2040 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

Bio2rdf: Bind search, rdfise and load demo

Created by Francois Belleau on Thursday 19 February 2009 05:07:30 (UTC)

Last edited by Francois Belleau on Thursday 19 February 2009 05:39:52 (UTC)