Bio2rdf: Bind search, rdfise and load demo

Created: 2009-02-19 05:07:30 Last updated: 2009-02-19 05:39:51

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INSERT IN GRAPH <http://localhost/sesame/mem_rdf_db> {
   CONSTRUCT { ?s, ?p, ?o . }
   FROM <http://soap.bind.ca/wsdl/bind.wsdl>
   WHERE {
       SELECT ?s
       FROM <http://soap.bind.ca/wsdl/bind.wsdl>
       WHERE {
            ?s, ?p, ?o .
           FILTER ( regex(?o, "query")) .
   }
   , ?p, ?o . }
}

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Workflow Components

Authors (1)

Titles (3)

Descriptions (2)

Dependencies (0)

Inputs (0)

Processors (8)

Name	Type	Description
genes_list	stringconstant	Value akt1s1,bad,bcl2l11,cdc25c,gab1,grb7
Split_string_into_string_list	localworker	Script List split = new ArrayList(); if (!string.equals("")) { String regexString = ","; if (regex != void) { regexString = regex; } String[] result = string.split(regexString); for (int i = 0; i < result.length; i++) { split.add(result[i]); } }
Bind_search	workflow
Bind_describe	workflow
Sesame_upload_triples	workflow
mem_rdf_db	stringconstant	Value mem-rdf-db
from_bind	stringconstant	Value bind:
akt1s1	stringconstant	Value akt1s1

Beanshells (6)

Name	Inputs	Outputs
Split_bmuri	bmuri	id
Bind_rdfiser	string	triples
Sesame_upload_triples	triples repository input_format	html
Split_string_into_string_list	string	split
Filter_list_of_strings_extracting_msg	stringlist	filteredlist
Concatenate_two_strings	string1 string2	output

Outputs (3)

Name	Description
o1
o2
o3

Datalinks (9)

Source	Sink
genes_list:value	Split_string_into_string_list:string
Split_string_into_string_list:split	Bind_search:query
Bind_search:bind_bmuris	Bind_describe:bind_bmuri
mem_rdf_db:value	Sesame_upload_triples:repository
Bind_describe:bind_triples	Sesame_upload_triples:triples
from_bind:value	Sesame_upload_triples:bmuri
Bind_search:bind_bmuris	o1
Bind_search:result_count	o2
Sesame_upload_triples:number_of_uploaded_triples	o3

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Francois Belleau

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Francois Belleau

Information Attributions (0)

(Workflows/Files)

None

Information Tags (4)

Uploader tags

bind
|
bio2rdf
|
demo
|
search

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Information Favourited By (0)

No one

Information Statistics

2327 viewings

2040 downloads

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Citations (0)

None

Version History

In chronological order:

Bio2rdf: Bind search, rdfise and load demo

Created by Francois Belleau on Thursday 19 February 2009 05:07:30 (UTC)

Last edited by Francois Belleau on Thursday 19 February 2009 05:39:52 (UTC)