This workflow uses one or more services that are deprecated as of 31st December 2012 (over 9 years ago), and may no longer function. Show details...

Get Kegg Gene information

Created: 2009-01-26 18:06:12 Last updated: 2009-12-14 12:05:21

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This workflow gets a series of information relating to a list of KEGG genes supplied to it. It also removes any null values from a list of strings.

Example input for this workflow is given below (new line separated):

mmu:13163

hsa:1616

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https://myexperiment.org/workflows/611/download?version=2
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Workflow Components

Inputs (1)

Name	Description
kegg_gene_id_list

Processors (11)

Name	Type	Description
btit	arbitrarywsdl
get_pathways_by_genes	arbitrarywsdl
regex	stringconstant
Remove_duplicate_pathways	local
merge_descriptions	local
merge_pathways	local
split_by_regex	local
merge_pathways_2	local
remove_nulls_2	beanshell
remove_Nulls	beanshell
btit1	arbitrarywsdl

Beanshells (2)

Name	Description	Inputs	Outputs
remove_nulls_2		input	output
remove_Nulls		input	output

Outputs (3)

Name	Description
gene_descriptions
pathway_by_genes
pathway_descriptions

Links (14)

Source	Sink
Remove_duplicate_pathways:strippedlist	merge_pathways_2:stringlist
btit1:return	pathway_descriptions
btit:return	merge_descriptions:stringlist
get_pathways_by_genes:return	merge_pathways:stringlist
kegg_gene_id_list	btit:string
kegg_gene_id_list	split_by_regex:string
merge_descriptions:concatenated	remove_Nulls:input
merge_pathways:concatenated	Remove_duplicate_pathways:stringlist
merge_pathways:concatenated	btit1:string
merge_pathways_2:concatenated	remove_nulls_2:input
regex:value	split_by_regex:regex
split_by_regex:split	get_pathways_by_genes:genes_id_list
remove_Nulls:output	gene_descriptions
remove_nulls_2:output	pathway_by_genes

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Paul Fisher

Information License

All versions of this Workflow are licensed under:

Information Version 2 (latest) (of 2)

Information Credits (1)

(People/Groups)

Paul Fisher

Information Attributions (0)

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None

Information Tags (6)

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Information Shared with Groups (2)

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Information Attributed By (3)

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Information Favourited By (3)

Information Statistics

3365 viewings

2785 downloads

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Citations (0)

None

Version History

In chronological order:

Get Kegg Gene information

Created by Paul Fisher on Monday 05 January 2009 13:20:34 (UTC)
Get Kegg Gene information

Created by Paul Fisher on Monday 26 January 2009 18:06:12 (UTC)

Last edited by Paul Fisher on Monday 14 December 2009 12:05:23 (UTC)

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Comments (1)

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Franck Tanoh	Wednesday 28 January 2009 11:40:50 (UTC)
	you can use this kegg id : "path:hsa05216" to test this workflow

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