This workflow uses one or more services that are deprecated as of 31st December 2012 (about 10 years ago), and may no longer function. Show details...

Get Kegg Gene information

Created: 2009-01-26 18:06:12 Last updated: 2009-12-14 12:05:21

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This workflow gets a series of information relating to a list of KEGG genes supplied to it. It also removes any null values from a list of strings.

Example input for this workflow is given below (new line separated):

mmu:13163

hsa:1616

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https://myexperiment.org/workflows/611/download?version=2
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Workflow Components

Inputs (1)

Name	Description
kegg_gene_id_list

Processors (11)

Name	Type	Description
btit	arbitrarywsdl
get_pathways_by_genes	arbitrarywsdl
regex	stringconstant
Remove_duplicate_pathways	local
merge_descriptions	local
merge_pathways	local
split_by_regex	local
merge_pathways_2	local
remove_nulls_2	beanshell
remove_Nulls	beanshell
btit1	arbitrarywsdl

Beanshells (2)

Name	Description	Inputs	Outputs
remove_nulls_2		input	output
remove_Nulls		input	output

Outputs (3)

Name	Description
gene_descriptions
pathway_by_genes
pathway_descriptions

Links (14)

Source	Sink
Remove_duplicate_pathways:strippedlist	merge_pathways_2:stringlist
btit1:return	pathway_descriptions
btit:return	merge_descriptions:stringlist
get_pathways_by_genes:return	merge_pathways:stringlist
kegg_gene_id_list	btit:string
kegg_gene_id_list	split_by_regex:string
merge_descriptions:concatenated	remove_Nulls:input
merge_pathways:concatenated	Remove_duplicate_pathways:stringlist
merge_pathways:concatenated	btit1:string
merge_pathways_2:concatenated	remove_nulls_2:input
regex:value	split_by_regex:regex
split_by_regex:split	get_pathways_by_genes:genes_id_list
remove_Nulls:output	gene_descriptions
remove_nulls_2:output	pathway_by_genes

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Paul Fisher

Information License

All versions of this Workflow are licensed under:

Information Version 2 (latest) (of 2)

Information Credits (1)

(People/Groups)

Paul Fisher

Information Attributions (0)

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None

Information Tags (6)

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Information Shared with Groups (2)

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Information Attributed By (3)

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Information Favourited By (3)

Information Statistics

3561 viewings

2890 downloads

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Citations (0)

None

Version History

In chronological order:

Get Kegg Gene information

Created by Paul Fisher on Monday 05 January 2009 13:20:34 (UTC)
Get Kegg Gene information

Created by Paul Fisher on Monday 26 January 2009 18:06:12 (UTC)

Last edited by Paul Fisher on Monday 14 December 2009 12:05:23 (UTC)

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Comments (1)

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Franck Tanoh	Wednesday 28 January 2009 11:40:50 (UTC)
	you can use this kegg id : "path:hsa05216" to test this workflow

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