Using CQL to query protein sequence data
Created: 2008-12-05 22:03:03
Last updated: 2009-07-14 19:32:17
To query protein sequence infomation out of 3 caGrid data services: caBIO, CPAS and GridPIR.
Scientific value
- To query protein sequence information out of 3 caGrid data services: caBIO, CPAS and GridPIR.
- To analyze a protein sequence from different data sources.
Steps
- Querying CPAS and get the id, name, value of the sequence.
- Querying caBIO and GridPIR using the id or name obtained from CPAS.
Preview
Run
Run this Workflow in the Taverna Workbench...
Workflow Components
Processors (12)
Name |
Type |
Description |
parametersXML |
local |
|
Beanshell_1 |
beanshell |
|
parametersXML1 |
local |
|
cqlQueryXML1 |
local |
|
parametersXML2 |
local |
|
Beanshell_2 |
beanshell |
|
parametersXML3 |
local |
|
cqlQueryXML |
local |
|
cqlQueryXML2 |
local |
|
CPASQuery |
arbitrarywsdl |
|
GridPIRQuery |
arbitrarywsdl |
|
caBIOQuery |
arbitrarywsdl |
|
Beanshells (2)
Name |
Description |
Inputs |
Outputs |
Beanshell_1 |
|
input
|
output
|
Beanshell_2 |
|
input
|
output
|
Outputs (3)
Name |
Description |
CPAS_Result |
|
GridPIR_Result |
|
caBIO_Result |
|
Links (14)
Source |
Sink |
Beanshell_1:output |
cqlQueryXML1:CQLQuery |
Beanshell_2:output |
cqlQueryXML2:CQLQuery |
CPASQuery:parameters |
parametersXML2:input |
cqlQueryXML1:output |
parametersXML1:cqlQuery |
cqlQueryXML2:output |
parametersXML3:cqlQuery |
cqlQueryXML:output |
parametersXML:cqlQuery |
CPASQuery:parameters |
CPAS_Result |
parametersXML1:output |
GridPIRQuery:parameters |
parametersXML2:CQLQueryResultCollection |
Beanshell_1:input |
parametersXML2:CQLQueryResultCollection |
Beanshell_2:input |
parametersXML3:output |
caBIOQuery:parameters |
parametersXML:output |
CPASQuery:parameters |
GridPIRQuery:parameters |
GridPIR_Result |
caBIOQuery:parameters |
caBIO_Result |
Uploader
License
All versions of this Workflow are
licensed under:
Version 1
(of 1)
Credits (1)
(People/Groups)
Attributions (0)
(Workflows/Files)
None
Shared with Groups (0)
None
Featured In Packs (0)
None
Log in to add to one of your Packs
Attributed By (1)
(Workflows/Files)
Favourited By (0)
No one
Statistics
Other workflows that use similar services
(1)
Comments (0)
No comments yet
Log in to make a comment