Using CQL to query protein sequence data

Created: 2008-12-05 22:03:03 Last updated: 2009-07-14 19:32:17

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To query protein sequence infomation out of 3 caGrid data services: caBIO, CPAS and GridPIR.

Scientific value

To query protein sequence information out of 3 caGrid data services: caBIO, CPAS and GridPIR.
To analyze a protein sequence from different data sources.

Steps

Querying CPAS and get the id, name, value of the sequence.
Querying caBIO and GridPIR using the id or name obtained from CPAS.

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Workflow Components

Inputs (0)

Processors (12)

Name	Type	Description
parametersXML	local
Beanshell_1	beanshell
parametersXML1	local
cqlQueryXML1	local
parametersXML2	local
Beanshell_2	beanshell
parametersXML3	local
cqlQueryXML	local
cqlQueryXML2	local
CPASQuery	arbitrarywsdl
GridPIRQuery	arbitrarywsdl
caBIOQuery	arbitrarywsdl

Beanshells (2)

Name	Description	Inputs	Outputs
Beanshell_1		input	output
Beanshell_2		input	output

Outputs (3)

Name	Description
CPAS_Result
GridPIR_Result
caBIO_Result

Links (14)

Source	Sink
Beanshell_1:output	cqlQueryXML1:CQLQuery
Beanshell_2:output	cqlQueryXML2:CQLQuery
CPASQuery:parameters	parametersXML2:input
cqlQueryXML1:output	parametersXML1:cqlQuery
cqlQueryXML2:output	parametersXML3:cqlQuery
cqlQueryXML:output	parametersXML:cqlQuery
CPASQuery:parameters	CPAS_Result
parametersXML1:output	GridPIRQuery:parameters
parametersXML2:CQLQueryResultCollection	Beanshell_1:input
parametersXML2:CQLQueryResultCollection	Beanshell_2:input
parametersXML3:output	caBIOQuery:parameters
parametersXML:output	CPASQuery:parameters
GridPIRQuery:parameters	GridPIR_Result
caBIOQuery:parameters	caBIO_Result

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Wei Tan

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Wei Tan

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Using CQL to query protein sequence data

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Using CQL to query protein sequence data

Created by Wei Tan on Friday 05 December 2008 22:03:03 (UTC)

Last edited by Wei Tan on Tuesday 14 July 2009 19:32:18 (UTC)