This is an example workflow which uses the entrez eUtils to query the gene database at NCBI and retrieve same data about some genes.
nucleotide
COX2*[GENE NAME]
org.embl.ebi.escience.scuflworkers.java.XMLInputSplitter
y
org.embl.ebi.escience.scuflworkers.java.XMLOutputSplitter
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl
run_eSearch
Given a list of Yeast genes IDs, returns a file with their sequences.
Given a list of Yeast genes IDs, returns a file with their sequences.
org.embl.ebi.escience.scuflworkers.java.XMLInputSplitter
org.embl.ebi.escience.scuflworkers.java.XMLOutputSplitter
org.embl.ebi.escience.scuflworkers.java.XMLOutputSplitter
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl
run_eFetch
This is a control variable to see if the WebEnv variable is passed correctly from the eSearch workflow (in the eSearch_eFetch.xml workflow)