blastp using the MRS system

Created: 2008-11-28 15:13:32 Last updated: 2008-11-28 15:34:19

Download Workflow

This blastp workflow uses the blast service of MRS (http://mrs.cmbi.ru.nl). Inputs are a sequence (only amino acids, not a fasta sequence) and a database name. Valid database names that can be used are "sprot", "uniprot", "trembl", "pdb", "refseq", "ipi" and "gpcrdb". Output is returned in XML.

Preview

Download as scalable diagram (SVG)

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://myexperiment.org/workflows/581/download?version=1
[ More Info Expand ]

Workflow Components

Inputs (2)

Name	Description
sequence
db

Processors (7)

Name	Type	Description
filterHits	local
castToXml	beanshell
blastJobResultOut	local
blastResultParametersIn	local
BlastJobResult	arbitrarywsdl
mrs_blast	workflow
mrs_blast_status	workflow

Beanshells (2)

Name	Description	Inputs	Outputs
checkStatus		status	isComplete
castToXml		input	output

Outputs (1)

Name	Description
hits

Links (9)

Source	Sink
BlastJobResult:parameters	blastJobResultOut:input
BlastJobResult:parameters	filterHits:xml-text
blastResultParametersIn:output	BlastJobResult:parameters
db	mrs_blast:db
filterHits:nodelistAsXML	castToXml:input
mrs_blast:jobId	blastResultParametersIn:jobId
mrs_blast:jobId	mrs_blast_status:jobId
sequence	mrs_blast:sequence
castToXml:output	hits

Coordinations (1)

Controller	Target
mrs_blast_status	BlastJobResult

Information Workflow Type

Taverna 1

Information Uploader

Bas Vroling

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Bas Vroling

Information Attributions (0)

(Workflows/Files)

None

Information Tags (4)

Uploader tags

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

1876 viewings

1833 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

blastp using the MRS system

Created by Bas Vroling on Friday 28 November 2008 15:13:32 (UTC)

Last edited by Bas Vroling on Friday 28 November 2008 15:34:20 (UTC)

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (1)

Taverna 2

Uploader

Bas Vroling

blastp using the MRS system (1)

Download

This blastp workflow uses the blast service of MRS (http://mrs.cmbi.ru.nl). Inputs are a sequence (only amino acids, not a fasta sequence) and a database. Databases that can be used are "sprot", "uniprot", "trembl", "pdb", "refseq", "ipi" and "gpcrdb".

Created: 2009-11-10

Credits: Bas Vroling