blastp using the MRS system

Created: 2008-11-28 15:13:32 Last updated: 2008-11-28 15:34:19

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This blastp workflow uses the blast service of MRS (http://mrs.cmbi.ru.nl). Inputs are a sequence (only amino acids, not a fasta sequence) and a database name. Valid database names that can be used are "sprot", "uniprot", "trembl", "pdb", "refseq", "ipi" and "gpcrdb". Output is returned in XML.

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Workflow Components

Inputs (2)

Name	Description
sequence
db

Processors (7)

Name	Type	Description
filterHits	local
castToXml	beanshell
blastJobResultOut	local
blastResultParametersIn	local
BlastJobResult	arbitrarywsdl
mrs_blast	workflow
mrs_blast_status	workflow

Beanshells (2)

Name	Description	Inputs	Outputs
checkStatus		status	isComplete
castToXml		input	output

Outputs (1)

Name	Description
hits

Links (9)

Source	Sink
BlastJobResult:parameters	blastJobResultOut:input
BlastJobResult:parameters	filterHits:xml-text
blastResultParametersIn:output	BlastJobResult:parameters
db	mrs_blast:db
filterHits:nodelistAsXML	castToXml:input
mrs_blast:jobId	blastResultParametersIn:jobId
mrs_blast:jobId	mrs_blast_status:jobId
sequence	mrs_blast:sequence
castToXml:output	hits

Coordinations (1)

Controller	Target
mrs_blast_status	BlastJobResult

Information Workflow Type

Taverna 1

Information Uploader

Bas Vroling

Information License

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Information Version 1 (of 1)

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Bas Vroling

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Information Statistics

1882 viewings

1834 downloads

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blastp using the MRS system

Created by Bas Vroling on Friday 28 November 2008 15:13:32 (UTC)

Last edited by Bas Vroling on Friday 28 November 2008 15:34:20 (UTC)

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Other workflows that use similar services (1)

Taverna 2

Uploader

Bas Vroling

blastp using the MRS system (1)

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This blastp workflow uses the blast service of MRS (http://mrs.cmbi.ru.nl). Inputs are a sequence (only amino acids, not a fasta sequence) and a database. Databases that can be used are "sprot", "uniprot", "trembl", "pdb", "refseq", "ipi" and "gpcrdb".

Created: 2009-11-10

Credits: Bas Vroling