Mitochondrial genome assembly _V2
Created: 2021-12-14 08:15:00
Last updated: 2021-12-14 08:16:31
Mitochondrial genome assembly
Preview
Not available
Import
Not currently available.
Workflow Components
Inputs (6)
| Name |
Description |
| Forward fasta, or fastq, fastq.gz |
|
| Reverse fasta, or fastq, fastq.gz |
|
| Single sequence (COI) from same or related species (Seed for NOVOplasty). |
|
| adapters |
runtime parameter for tool FastQC |
| contaminants |
runtime parameter for tool FastQC |
| limits |
runtime parameter for tool FastQC |
Steps (9)
| Name |
Tool |
Description |
| Input dataset |
None |
|
| Input dataset |
None |
|
| Input dataset |
None |
|
| FastQC |
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
|
| FastQC |
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
|
| Trimmomatic |
toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.38.1 |
|
| FastQC |
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
|
| FastQC |
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
|
| NOVOplasty |
toolshed.g2.bx.psu.edu/repos/iuc/novoplasty/novoplasty/4.2+galaxy0 |
|
Outputs (20)
| Name |
Type |
| html_file |
html |
| text_file |
txt |
| html_file |
html |
| text_file |
txt |
| fastq_out_r1_paired |
input |
| fastq_out_r2_paired |
input |
| fastq_out_r1_unpaired |
input |
| fastq_out_r2_unpaired |
input |
| html_file |
html |
| text_file |
txt |
| html_file |
html |
| text_file |
txt |
| out_c |
fasta |
| out_ct |
txt |
| out_mc |
txt |
| out_cc |
txt |
| out_ar1 |
fasta |
| out_ar2 |
fasta |
| out_ua |
fasta |
| out_ca |
fasta |
Uploader
License
All versions of this Workflow are
licensed under:
Version 1
(of 1)
Credits (1)
(People/Groups)
Attributions (0)
(Workflows/Files)
None
Shared with Groups (0)
None
Featured In Packs (0)
None
Log in to add to one of your Packs
Attributed By (0)
(Workflows/Files)
None
Favourited By (0)
No one
Statistics
Other workflows that use similar services
(0)
There are no workflows in myExperiment that use similar services to this Workflow.
Download Workflow
Reviews
(0)
No comments yet
Log in to make a comment