KNIME Workflow for RetroRules and Retropath2.0

Created: 2018-07-26 12:52:55      Last updated: 2018-08-11 18:00:56

KNIME Workflow for RetroRules and RetroPath2.0

This worflow provides an examples of retrieving the RetroRules reaction rules for some given reaction identifiers.

1. Input to the workflow: Chemical reactions expressed using public database identifiers.
2. Each reaction queries RetroRules and outputs the corresponding reaction rules.
3. Resulting list of rulesenzymes is stored in a csv file in RetroPath2.0 format.

Installation notes
The workflow runs a Python scrpt that requires pandas: Python Data Analysis Library. In order to setup the Python Extension, please check the KNIME documentation: 
https://www.knime.com/blog/how-to-setup-the-python-extension

Release: r20180811
 

How to cite
Duigou T, Du Lac, M., Carbonell P, Faulon JL. RetroRules: a database of reaction rules for engineering biology.

Please report bugs to pablo.carbonell@manchester.ac.uk

Worfklow Licence: CC BY-SA
P. Carbonell, 2018.

This work is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/4.0/.

Information Preview

Not available

Information Run

Not available


Information Workflow Components

Not available

Information Workflow Type

KNIME

Information Uploader

Information License

All versions of this Workflow are licensed under:

Creative Commons Attribution-ShareAlike 4.0 International License

Information Version 3 (latest) (of 3)

View version:

Information Credits (1)

(People/Groups)

Information Attributions (0)

(Workflows/Files)

None

Information Tags (6)

Log in to add Tags

Information Shared with Groups (1)

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

 

Citations (0)

None


Version History

In chronological order:



Reviews Reviews (0)

No reviews yet

Be the first to review!



Comments Comments (0)

No comments yet

Log in to make a comment




Workflow Other workflows that use similar services (0)

There are no workflows in myExperiment that use similar services to this Workflow.