workflow1

Created: 2008-10-01 12:00:42

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Workflow Components

Inputs (1)

Name	Description
geneIdentifier

Processors (4)

Name	Type	Description
Get_Protein_FASTA	local
searchSimple	arbitrarywsdl	Execute Blast
program	stringconstant
database	stringconstant

Beanshells (0)

Outputs (2)

Name	Description
fastaSequence
blast_report

Links (6)

Source	Sink
geneIdentifier	Get_Protein_FASTA:id
Get_Protein_FASTA:outputText	searchSimple:query
database:value	searchSimple:database
program:value	searchSimple:program
Get_Protein_FASTA:outputText	fastaSequence
searchSimple:Result	blast_report

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Chris

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Chris

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Information Shared with Groups (1)

NERC Tutorial

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Information Attributed By (0)

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Information Favourited By (0)

No one

Information Statistics

773 viewings

1366 downloads

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Citations (0)

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Version History

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workflow1

Created by Chris on Wednesday 01 October 2008 12:00:42 (UTC)

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Perform a sequence similarity search using the BLAST algorithm through the DDBJ web service. Example input for this service are given below. query: >MySequence MATDDSIIVLDDDDEDEAAAQPGPSNLPPNPASTGPGPGLSQQATGLSEPRVDGGSS NSGSRKCYKLDNEKLFEEFLELCKTETSDHPEVVPFLHKLQQRAQSVFLASAEFCNIL SRVLARSRKRPAKIYVYINELCTVLKAHSIKKKLNLAPAASTTSEASGPNPPTEPPSDLT NTENTASEASRTRGSRRQIQRLEQLLALYVAEIRRLQEKELDLSELDDPDSSYLQEAR LKRKLIRLFGRLCELKDCSSLTGRVIEQRIPYRGTRYPEVNRRIERLINKPGLDTFPDY GDVLRAVEKAATRHSLGLP...

Created: 2007-10-03 | Last updated: 2009-12-03