Workflow133direct_data00 Direct data 2015-10-17 09:16:38.721 UTC >KF744407 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>KF744408 atgaataaccaacgaaaaaaggcgagaaaaacgcctttcaatatgctgaaacgcgagagaaaccgcgtgtcaactgtgcagcagctgacaaagagattctcacttggaatgctgcagggacgaggaccattgaaactgttcatggccctggtggcattccttcgtttcctaacaatcccgccaacagcagggatattaaaaagatggggaacaatcaaaaaatcaaaggctatcaatgtcttgagagggttcaggaaagagattggaaggatgctgaacatcttgaacaggagacgcagaactgcaggtgtgatcatcatgatgattccaacagtggtggcgttccatttaaccacacgcaacggagaaccacacatgatcgtcagtagacaagagaaagggaaaagtcttctgtttaaaacagagaacggtgtgaacatgtgtaccctcatggccttggaccttggtgaattgtgtgaagacacaatcacttataattgtcctcttctcaggcagaatgaaccagaagacatagactgttggtgcaactctacgtctacatgggtaacttatgggacatgcaccgccacaggagaacacagaagggaaaaaagatcagtggcactcgttccacatgtgggaatgggactggagacacgaactgaaacatggatgtcatcagaaggggcctggaaacatgctcagagaatcgaaacttgggtcttgagacatccaggctttaccataatggcagcaatcctggcatacaccataggaacgacatatttccaaagagtcctgattttcatcttactgacagctgtcgctccttcaatgacaatgcgttgtataggaatatcaaatagagactttgtggaaggggtttcaggaggaagctgggttgacatagtcttagaacatggaagctgtgtgacgacgatggcgaaaaataaaccaacattggattttgaactgacaaaaacggaagccaaacatcccgccactttaaggaagtattgtatagaggcaaagctgaccaacacaacaacagcatctcgctgcccaacacaaggagaacccagcctaaatgaagaacaggacaaaaggtttgtctgcaaacactccatggtagacagaggatggggaaatggatgcggattatttggaaagggaggcatcgtgacctgtgcaatgttcacatgcaaaaagaacatggaaggaaaaatcgtgcaaccagaaaacttggagtacaccattgtgataacacctcactcaggggaagagaatgcagtcggaaatgacacaggaaaacacggcaaggaaattaaagtaacaccacagagttccattacagaagcagaactgacaggctatggcactgtcacgatggaatgctctccgagaacgggcctcgactttaatgagatggtgttgctgcaaatggaagacaaggcttggctggtgcacaggcagtggttcttagaccttccgttaccatggctgcccggagcagacacacaaggatcaaattggatacagaaggagacattggtcactttcaaamatccccatgcgaagaaacaggatgttgtcgttttaggatcccaagaaggggctatgcatacagcactcacaggggccacggaaatccagatgtcatcaggaaacttactgttcacaggacatcttaagtgcaggctgagaatggacaaactacagctcaaaggaatgtcatattctatgtgtacaggaaagtttaaagttgtgaaggaaatagcagaaacacaacatggaacaatagttatcagagtacaatatgaaggggacggttctccgtgcaagatcccttttgaaataatggatttggaaaaaagacatgtcttaggtcgcttgatcacagtcaacccaattgttgcagaaaaagacagcccagtcaacatagaagcagaacctccattcggagacagttacatcattataggagtagaaccgggacaactgaagctcagctggtttaagaaaggaagttctattggccaaatgtttgagacaacaatgagaggagcgaagagaatggccatcttaggtgacacagcttgggattttggatccctgggaggagtgttcacatctataggaaaggccctccaccaagtctttggagcaatctatggggctgcctttagcggggtttcatggactatgaaaatcctcataggagtcgtcatcacatggataggaatgaattcacgcagcacctcactgtctgtgtcactagtattagtgggggtcgtgacattgtatttgggagtcatggtgcaggccgatagtggttgcgttgtgagttggagaaacaaagaactgaaatgtggtagtgggatttttatcacagacaacgtgcacacatggacagaacaatacaaattccaaccagaatccccttcaaagctggcttcagctatccagaaggctcatgaagagggcatttgtggaatccgctcagtaacaagattggagaatctgatgtggaaacaaataacaccagaactgaatcacattctatcagaaaatgaggtaaaattgactatcatgacaggagacattaaaggaatcatgcaggcaggaaaacgatccctgcggccccaacccactgagctgaagtactcttggaaagcatggggcaaagcgaaaatgctctccacagagcttcataaccacacctttctcattgatggccccgaaacagcagaatgtcccaacacaaacagagcttggaactcactagaagttgaagactatggctttggagtattcaccaccaacatatggctgaaactgaaagaaaggcaggatgtattttgtgactcaaaactcatgtcagcagccataagagacaacagggccgtccacgccgatatgggttattggatagaaagcgcacttaatgacacatggaagattgagaaagcctcttttattgaagttaaaagctgccactggccaaagtcacacactctctggagtaatggagtgctagaaagtgagatgataattccaaagaattttgcaggaccagtgtcacagcacaactacagaccaggctatcatacacaaacggcaggaccctggcatctaggtaagcttgagatggactttgatttctgcgaaggaaccacagtggtagtgactgaggactgtggaaatagaggaccctctttaagaacaactactgcttctggaaaactcataacagaatggtgctgccgatcttgcacattaccaccgctaaggtacagaggtgaggatggatgctggtatggaatggaaatcaggccattgaaagagaaagaagagaacttggtcaactctttggtcacagccggacttggacagattgacaacttctcactaggagtcttgggaatggcattgttcctggaagaaatgctcaggacccgcgtaggaacgaaacatgcaatattgctagttgcagtttctttcgtgacattgatcacagggaacatgtcttttcgagatttggggagagtgatggttatggtgggcgctactatgacggatgacataggcatgggcgtgacttatcttgccctattagcagccttcaaagtcagaccaacttttgcagctggactactcttgagaaagctgacctccaaggaattaatgatgaccaccataggaatcgtactcctctctcagagcaccataccagagactatacttgaactgactgacgcgctggctttggggatgatggttctcaaaatagtgagaaacatggaaaagtatcaactagcagtgactatcatggccatcttgtgcgtcccaaatgcagtgatattacaaaacgcatggaaagtgagctgcacaacactggcagtggtgtccgtttccccactgcttttaacatcctcacagcagaaagcagattggataccactggcgttgacgatcaaaggcctcaatccaacagccattttcttaacaaccctctcaagaactagcaagaaaaggagctggccactaaatgaggctattatggcagtcgggatggtgagcattttagccagttctctcttaaagaatgatattcccatgacaggaccattagtagctggagggcttctcactgtgtgttacgtgctcactggaagatcggctgatttggaactggagagagctgctgacgtaagatgggaagaacaggcagagatatcaggaagtagtccaattctgtcaataacaatatcggaagatggtagcatgtcgataaaaaatgaagaagaagaacaaacactgaccatactcattaggacaggactgctggtgatatcaggactttttcccgtgtcaataccaatcacggcagctgcatggtacctgtgggaagtgaaaaaacaacgagccggagtattgtgggatgtcccttcacccccacctgtgggaaaggccgaactggaagatggagcctatagaatcaagcagaaagggattctaggatactcgcagatcggggctggagtttacaaagaaggaacattccacacaatgtggcacgtcacacgcggtgctgtcctaatgcataaagggaagagaattgaaccatcatgggcggacgtcaagaaagacctaatatcgtatggaggaggctggaagctagaaggagaatggaaggaaggagaagaagtccaggtcctggcattagagcctggaaagaatccaagagccgtccaaacaaaacccggtctcttcaaaactaacactggaaccataggcgccgtatctctggacttttctcctggaacgtcaggatctccaatcgtcgacaaaaaaggaaaagttgtgggcctttatggcaacggcgtcgtcacaaggagtggaacatatgtgagtgccatagcccagactgaaaaaagcattgaagataatccagagattgaagatgacatctttcgaaagaaaagattgaccatcatggacctccacccaggggcgggaaaaacgaagagataccttccagcaatagtcagagaagccataaaacgaggcttgaggacactaatcctggcccccactagagttgtggcggctgaaatggaagaagctctcagaggacttccaataagataccaaacccccgccatcagagctgagcacactgggcgggagattgtggatctaatgtgtcacgccacatttaccatgaggctgctatccccaattagagtaccaaattacaacctgatcatcatggatgaagcccatttcacagacccagcaagcatagcagctagaggatacatttcaactcgagttgagatgggtgaagcagctgggattttcatgacagctactcctcctggaagcagagacccatttcctcagagcaatgcaccaatcatggatgaagaaagggaaatccctgagcgttcgtggaattctggacatgaatgggttacggattttaaagggaagactgtttggtttgttccaagtataaaagcaggaaatgatatagcagcttgcctgagaaagaatggaaagaaagtgatacaactcagcaggaagacctttgattctgaatatgtcaagactaggaccaatgattgggactttgtggtcacgacagacatttcagaaatgggcgctaacttcaaggctgagagggttatagaccccaggcgctgcatgaaaccagtcatactaacagacggtgaagagcgggtgatcctggcaggacccatgccagtgacccactctagtgcagcacaaagaagagggagagtaggaagaaatccaaaaaatgaaaatgaccagtacatatacatgggggaacctctggaaaatgatgaagactgtgcacactggaaagaagctaagatgcttctagataacatcaacacgcccgaaggaatcattcccagtatgttcgaaccagagcgtgaaaaggtggatgccattgatggtgaataccgcttaagaggagaagcgaggaaaacttttgtggacctaatgagaagaggagacctaccagtctggctagcctacagagtggcagctgaaggtatcaactacgcagacagaagatggtgctttgatggagtcaagaacaatcaaatcttggaagaaaatgtggaagtggaaatttggacaaaagaaggagaaaggaagaaattaaaacccagatggttggatgctaggatctactctgacccactggcgctcaaagaattcaaggaattcgcagctggaagaaagtccctgaccctgaatctaatcacagagatgggtaggctcccaaccttcatgacccagaaagcaaggaacgcactagacaacttagcagtcctgcatacggctgaagcaggcggaagggcgtacaatcatgctcttagtgaactgccggagaccctggagacattgcttttactgacactcttggccacagtcacgggcggaatcttcctattcttgatgagcggaaaaggcatagggaagatgaccctgggaatgtgctgcataatcacggccagtgttctcctatggtatgcacaaatacagccacactggatagcagcttcaataatactggagttttttctcatagtcttgctcattccagaaccagaaaagcagagaacaccccaagataaccaattaacttatgttgtcatagccatccttacagtggtggccgcaaccatggcaaacgagatgggtttcctggaaaaaacaaagaaagacttcggattgggaagcattgcaacccagcaacctgagagcaacatcctggacatagatctacgtcctgcatcagcttggactctatatgctgtggcaacaactttcatcacaccaatgctgagacacagcattgaaaattcctcagtgaatgtgtctctaacggccattgccaaccaagccacagttttaatgggtcttgggaaaggatggccattgtcaaaaatggacatcggagttccccttctcgctatcgggtgctattcacaagttaaccccataactctcacggcagcccttctcttattggtagcacattatgccatcatagggccaggactccaagcgaaagcaactagagaagctcagaaaagagcagcagcgggcatcatgaaaaacccaactgtggatggaataacagtgattgacctagattcaataccctatgatccaaagtttgaaaagcagttgggacaagtaatgctcctagtcctctgcgtgactcaagtattgatgatgaggactacatgggctttgtgtgaagctctaaccttagcgactgggcccatctccacactgtgggaaggaaatccagggagattttggaatacaactattgcagtatcaatggctaacatttttagagggagctacctggccggagccggacttctcttttctatcatgaagaatacggccaacacaagaaggggaactggcaacacaggagagacgcttggagaaaaatggaaaaaccgattgaatgcattggggaagagtgaatttcagatctataagaaaagtggaatccaggaggtggatagaaccttagcaaaagaaggcatcaaaagaggagaaacggaccatcacgctgtgtcgcgaggctcggcgaaactgagatggttcgtcgagagaaacctggtcacaccagaagggaaagtaatggacctcggttgcggcagggggggctggtcatactattgtgggggactaaagaatgtaaaagaagtcaaaggcctaacaaaaggaggaccaggacacgaagaacccattcccatgtcaacatatggttggaacctggtgcgtcttcaaagtggagttgatgttttttttactccgccagaaaagtgtgacacactactgtgtgacataggggagtcgtcaccaaaccccacggttgaggcaggacgaacactcagagttctaaacctagtggaaaattggctgaacaacaacacccaattttgcatcaaggttctcaacccatatatgccctcagttatagaaaaaatggaagcgctgcaaaggaaatacggaggagctttggtgaggaatccactctcacgaaattccacacacgagatgtactgggtatccaatgcttccgggaacatagtgtcatcagtgaacatgatttcaagaatgttgattaacaggttcacaatgagacataagaaggccacatacgagccagatgttgacctcggaagcggaacccgcaacatcggaattgaaagtgagataccaaatttggacataattgggaaaagaatagaaaaaataaaacaagagcatgaaacatcatggcactatgaccaggaccacccatacaaaacgtgggcctaccatggcagctacgaaacaaaacagactggatcggcatcatccatggtgaacggagtggttaggctgctaacaaaaccttgggacgtcatccctatggtgacacagatggcaatgacagacacgactccatttggacaacagcgcgttttcaaagagaaagtggacacgagaacccaagaaccgaaagaaggcacgaaaaaactaatgaaaatcacggcagaatggctctggaaagaattaggaaagaaaaagacacctaggatgtgcaccagagaagaattcacaagaaaggtgagaagcaatgcagccttaggcgccatattcactgatgagaacaagtggaagtcggcacgtgaggctgttgaagatagtggattttgggaactggttgacaaggaaaggaatcttcatcttgaaggaaagtgtgagacatgtgtgtataacatgatgggaaagagagagaagaagctaggggagttcggcaaagcaaaaggcagcagagccatatggtacatgtggcttggagcacgcttcttagagtttgaagccctaggattcttgaatgaagatcactggttttccagagagaactccctgagtggagtggaaggagaagggctgcacaaactaggctacattttaagagacgtgagcaagaaagaaggaggagcaatgtacgccgatgacacmgcagsatgggacacaagaatcacactagaggacttaaaaaatgaagaaatggtgacaaaccacatggaaggagaacacaagaaacttgctgaagccattttcaaattaacgtaccaaaacaaggtggtgcgtgtgcaaagaccaacaccaagaggcacagtaatggacattatatcgagaagagaccaaagaggtagcggacaagttgtcacctacggcctcaatactttcaccaacatggaagcccaactgatcagacagatggagggagaaggagtcttcaaaagcatccagcacctgacagtcacagaagaaattgcagtgaaaaactggttagcaagagtggggcgtgagaggttatcaagaatggctatcagtggagatgattgtgttgtgaaacccttagatgataggtttgcaagcgctctaacagctctaaatgacatgggaaaagttaggaaagacatacaacaatgggaaccttcaagaggatggaacgattggacacaagtgcccttttgttcacaccatttccatgagwtaatcatgaaggacggtcgcgtactcgtagttccatgcagaaaccaagatgaactgattggtagggcccgaatttcccagggagccgggtggtctttgcgggaaacagcctgtttggggaagtcttacgcccaaatgtggagcctgatgtacttccacagacgtgaccttaggctggcggcaaatgccatttgctcggcagtcccatcacattgggttccaacaagtcgaacaacttggtccatacatgccacacatgagtggatgacaacagaagatatgctgacagtctggaacagggtgtggattcaagaaaacccatggatggaagacaaaactccagtagaatcatgggaggaaatcccatatttggggaaaagagaagaccaatggtgcggctcattgatcgggctaacaagcagggccacttgggcaaagaacatccaaacagcaataaatcaagttagatccctaataggcaatgaggaatacacggactacatgccatccatgaaaaggttcagaagagaagaggaagaggcaggagtcttgtggtag >JN697058 ATGAACAACCAACGAAAAAAGACGGCTCGACCGTCTTTCAATATGCTGAAACGCGCGAGAAACCGCGTGT CAACTGTTTCACAGTTGGCGAAGAGATTCTCAAAAGGATTGCTCTCAGGCCAAGGACCCATGAAACTGGT GATGGCTTTCATAGCATTCCTAAGATTTCTAGCCATACCCCCAACAGCAGGAATTTTGGCTAGATGGGGC TCATTCAAGAAGAACGGAGCGATCAAAGTGCTACGGGGTTTCAAGAAAGAAATCTCAAACATGTTGAATA TAATGAATAGAAGGAAAAGATCTGTGACCATGCTCCTTATGCTGATGCCCACAGCCTTGGCGTTCCATTT GACTACACGAGGGGGAGAGCCGCACATGATAGTCAGCAAGCAGGAAAGAGGAAAGTCACTTTTGTTTAAG ACCTCAGCAGGTGTCAACATGTGCACCCTTATAGCGATGGATTTGGGAGAGTTATGTGAGGACACAATGA CTTACAAATGCCCTAGAATCACTGAGGCGGAACCAGATGACGTTGATTGTTGGTGCAATGCCACAGACAC ATGGGTGACCTATGGAACATGTTCCCAAACTGGCGAGCACCGACGAGACAAACGTTCCGTCGCACTGGCC CCACACGTGGGACTTGGTTTGGAAACAAGAACCGAAACGTGGATGTCCTCCGAAGGCGCTTGGAAACAGA TACAAAGAGTGGAGACTTGGGCCCTGAGACACCCAGGATTCACGGTGATAGCTCTCTTTCTAGCACATGC CATAGGAACATCTATCACCCAGAAAGGGATTATCTTCATTTTGTTAATGCTGGTTACACCATCCATGGCC ATGCGATGCGTGGGAATAGGCAGCAGGGACTTCGTGGAAGGACTGTCAGGAGCAACTTGGGTAGATGTGG TGCTGGAACATGGAAGTTGCGTCACTACCATGGCAAAAGACAAACCAACATTGGACATTGAACTCTTGAA GACGGAAGTCACAAACCCTGCCGTCCTGCGCAAACTGTGCATTGAAGCTAAAATATCAAACACCACCACC GACTCAAGATGTCCAACACAAGGAGAAGCCACACTGGTGGAAGAACAAGACGCGAACTTTGTGTGTCGAC GAACGTTTGTGGACAGAGGCTGGGGCAATGGCTGTGGGCTCTTCGGAAAAGGAAGCCTTATAACGTGTGC TAAGTTCAAGTGTGTGACAAAACTGGAAGGAAAAATAGTTCAATATGAAAACTTGAAATATTCAGTAATA GTCACCGTCCACACTGGAGACCAGCACCAGGTGGGAAATGAAAGCACAGAACATGGGACAACTGCAACTA TAACACCTCAAGCTCCTACGACGGAAATACAGCTGACCGACTACGGAGCTCTTACATTGGATTGTTCACC TAGAACAGGACTAGACTTCAATGAAATGGTGTTGTTGACAATGAAAGAAAAATCATGGCTAGTCCACAAA CAATGGTTTCTAGACCTACCACTGCCTTGGACCTCGGGAGCTTCAACATCACAAGAAACTTGGAACAGAC AAGATTTGCTGGTGACATTTAAGACAGCTCATGCAAAGAAGCAGGAAGTAGTCGTACTAGGATCACAAGA AGGAGCAATGCACACTGCGTTGACCGGAGCGACAGAAATCCAAACGTCTGGAACGACAACAATTTTTGCA GGACACTTGAAATGTAGACTAAAGATGGACAAATTGACTCTAAAAGGGATGTCATATGTGATGTGCACAG GCTCATTCAAGCTAGAGAAAGAAGTGGCTGAGACCCAGCATGGAACCGTTCTAGTGCAGATTAAATACGA AGGAACAGATGCACCATGCAAGATCCCTTTTTTGACCCAAGATGAAAAAGGAGTAACCCAGAATGGGAGA TTGATAACAGCCAACCCCATAGTCACTGACAAAGAAAAACCAGTCAACATTGAGGCAGAACCGCCTTTTG GTGAGAGTTACATCGTGATAGGAGCAGGTGAAAAAGCTTTGAAACTAAGCTGGTTCAAGAAAGGAAGCAG CATAGGGAAGATGTTTGAGGCAACTGCCAGAGGAGCACGAAGGATGGCCATACTGGGAGACACCGCATGG GACTTTGGTTCTATAGGAGGAGTGTTCACGTCTGTTGGAAAATTAGTACACCAGATTTTTGGAACTGCAT ATGGAGTTTTGTTCAGCGGTGTTTCCTGGACCATGAAAATAGGAATAGGGGTTCTGCTGACATGGCTAGG ATTAAACTCAAGGAGCACGTCCCTTTCGATGACGTGCATTGCAGTTGGCCTGGTAACGCTATACTTAGGA GTCATGGTTCAGGCGGATTCAGGATGTGTAATTAATTGGAAAGGTAGAGAACTCAAATGTGGAAGTGGCA TTTTTGTCACCAATGAAGTTCACACTTGGACAGAGCAATACAAATTTCAAGCTGATTCCCCAAAGAGGCT ATCAGCAGCCATTGGGAAGGCATGGGAGGAGGGTGTGTGTGGAATTCGATCAGCAACTCGTCTCGAGAAC ATCATGTGGAAGCAAATATCAAATGAATTGAACCACATCTTACTTGAAAATGATATGAAATTCACAGTGG TTGTAGGAGATGTTGCTGGGATCTTGGCTCAAGGGAAAAAAATGATTAGGCCACAACCCATGGAATACAA ATACTCGTGGAAAAGCTGGGGAAAGGCTAAAATCATAGGGGCAGATGTACAGAACACCACCTTCATCATC GACGGCCCAAACACCCCAGAATGCCCTGATGATCAAAGAGCGTGGAACATTTGGGAAGTTGAGGATTATG GATTTGGAATTTTCACGACAAACATATGGCTGAAATTGCGTGACTCCTACACCCAAGTGTGTGACCACCG GCTAATGTCAGCCGCCATCAAGGACAGCAAGGCAGTTCACGCTGACATGGGGTACTGGATAGAAAGTGAA AAGAACGAGACCTGGAAGCTGGCAAGAGCCTCTTTCATAGAAGTCAAAACATGTATCTGGCCAAAATCCC ACACTCTATGGAGCAATGGAGTTCTGGAAAGTGAAATGATAATTCCAAAGATCTATGGAGGACCAACATC TCAGCACAACTACAGACCAGGATATTTCACACAAACGGCAGGGCCGTGGCACCTAGGCAAGTTGGAACTG GATTTTGATTTGTGTGAGGGTACCACAGTTGTTGTGGATGAACATTGTGGAAATCGAGGACCATCTCTTA GGACCACAACAGTCACAGGAAAGATAATTCATGAATGGTGTTGCAGATCTTGTACGCTGCCACCCTTACG TTTCAGAGGAGAAGATGGGTGCTGGTACGGTATGGAAATCAGACCAGTCAAGGAAAAGGAAGAGAATCTA GTCAAGTCAATGGTCTCTGCAGGGTCAGGGGAAGTGGACAGCTTTTCACTAGGACTGCTATGCATATCAA TAATGATCGAAGAGGTGATGAGATCCAGATGGAGTAGAAAAATGCTGATGACTGGAACACTGGCTGTGTT CTTCCTTCTCATAATGGGACAATTGACATGGAATGATCTGATCAGATTATGCATCATGGTCGGAGCCAAC GCTTCCGACAGGATGGGGATGGGAACGACGTACCTAGCTCTGATGGCCACTTTTAAAATGAGACCAATGT TTGCTGTAGGGCTACTATTCCGCAGACTAACATCCAGAGAAGTTCTTCTTCTAACAATTGGATTGAGTCT AGTGGCATCTGTGGAGTTACCAAATTCCTTGGAGGAGCTGGGGGATGGACTTGCAATGGGCATTATGATT TTAAAACTATTGACTGATTTTCAATCACATCAGCTGTGGGCTACCTTGCTGTCCTTGACATTCATCAAAA CAACGTTTTCCTTGCACTATGCATGGAAGACAATGGCTATGGTACTGTCAATTGTATCTCTCTTCCCCTT ATGCCTGTCCACGACCTCCCAAAAAACAACATGGCTTCCGGTGCTATTGGGATCTCTTGGATGCAAACCA CTAACCATGTTTCTTATAGCGGAAAACAAAATCTGGGGAAGGAAAAGTTGGCCCCTCAATGAAGGAATCA TGGCTGTTGGAATAGTCAGCATCCTACTAAGTTCACTCCTCAAAAATGATGTGCCGCTAGCTGGGCCACT AATAGCTGGAGGCATGCTAATAGCATGTTATGTTATATCTGGAAGCTCAGCCGATCTATCACTAGAGAAA GCGGCTGAGGTCTCCTGGGAAGAAGAAGCAGAACACTCTGGTGCCTCACACAACATATTAGTGGAGGTCC AGGATGATGGAACCATGAAGATAAAGGATGAAGAGAGAGATGACACGCTAACCATTCTCCTTAAAGCAAC TCTGCTAGCAGTTTCAGGGGTGTACCCATTATCAATACCAGCGACCCTTTTTGTGTGGTACTTTTGGCAG AAAAAGAAACAGAGATCTGGAGTGTTATGGGACACACCTAGCCCTCCAGAAGTGGAAAGAGCAGTTCTTG ATGATGGTATCTATAGAATCATGCAGAGAGGACTGTTGGGCAGGTCCCAAGTAGGGGTAGGAGTTTTTCA AGAAAACGTGTTCCACACAATGTGGCATGTCACCAGGGGAGCTGTACTCATGTATCAAGGGAAGAGACTG GAACCGAGCTGGGCCAGTGTCAAAAAAGACCTGATCTCATATGGAGGAGGTTGGAGGCTTCAAGGATCCT GGAACACGGGAGAAGAAGTGCAGGTGATTGCTGTTGAACCAGGGAAGAACCCCAAAAATGTACAAACAGC GCCGGGCACCTTTAAGACCCCTGAAGGCGAAGTTGGAGCCATTGCCCTAGATTTTAAACCCGGCACATCT GGATCTCCCATCGTGAACAGAGAAGGAAAAATAGTAGGCCTTTATGGAAATGGAGTAGTGACAACAAGTG GAACCTACGTCAGTGCCATAGCCCAAGCTAAAGCATCACAGGAAGGGCCCCTACCAGAGATTGAAGACGA GGTGTTTAGGAAAAGAAACTTAACAATAATGGACCTACATCCAGGATCGGGGAAAACAAGAAGATACCTT CCAGCCATAGTCCGTGAGGCCATAAAAAGGAAGCTGCGCACACTAATTCTGGCTCCCACAAGGGTTGTCG CTTCCGAAATGGCAGAGGCGCTCAAGGGAATGCCAATAAGGTACCAAACAACAGCAGTGAAGAGTGAACA CACAGGAAAAGAGATAGTTGACCTCATGTGTCACGCCACTTTCACCATGCGCCTCCTGTCTCCCGTGAGA GTTCCCAATTACAACATGATTATCATGGATGAAGCACATTTCACCGATCCATCCAGCATAGCGGCTAGAG GGTACATCTCAACTCGAGTGGGCATGGGTGAAGCAGCTGCGATCTTCATGACAGCCACTCCCCCAGGATC AGTGGAGGCCTTTCCACAGAGCAACGCAGTTATCCAAGATGAGGAAAGAGACATTCCTGAGAGATCATGG AACTCAGGCTATGACTGGATCACTGACTTCCCAGGCAAAACAGTTTGGTTTGTTCCAAGCATTAAATCAG GAAATGATATTGCCAACTGCTTAAGAAAGAATGGAAAACGGGTGATTCAATTGAGCAGGAAAACCTTTGA CACAGAGTACCAAAAAACAAAAAATAACGACTGGGACTACGTCGTCACAACAGACATCTCCGAAATGGGA GCAAATTTCCGGGCCGACAGGGTGATAGACCCAAGACGGTGTCTGAAACCGGTAATACTAAAAGATGGTC CAGAGCGTGTCGTTTTAGCAGGACCGATGCCAGTGACTGTGGCCAGTGCCGCCCAGAGGAGAGGAAGAAT TGGAAGGAACCACAATAAGGAAGGTGATCAGTACATCTACATGGGACAGCCTTTAAACAACGATGAAGAT CACGCTCACTGGACGGAAGCAAAAATGCTCCTTGATAATATAAACACACCAGAAGGGATTATCCCAGCCC TCTTCGAGCCGGAGAGAGAAAAGAGTGCAGCAATAGACGGGGAATACAGACTGCGGGGTGAAGCAAGGAA AACGTTTGTGGAGCTCATGAGAAGAGGAGATCTACCTGTCTGGCTATCCTACAAAGTTGCCTCAGAAGGC TTCCAGTACTCTGATAGAAGATGGTGCTTTGACGGGGAAAGGAACAACCAGGTGTTGGAGGAGAACATGG ACGTGGAGATCTGGACAAAAGAAGGAGAAAGAAAGAAACTACGACCCCGCTGGCTGGATGCCAGAACATA CTCAGACCCACTGGCCCTGCGCGAGTTTAAAGAGTTTGCAGCAGGAAGAAGAAGCGTCTCAGGTGATCTA ATATTAGAAATAGGGAAACTTCCACAACACTTGACGCAAAGGGCCCAGAATGCCTTGGACAACCTGGTTA TGTTGCACAACTCCGAACAAGGAGGAAGAGCCTATAGACATGCAATGGAAGAACTGCCAGACACCATAGA AACGTTGATGCTCCTAGCTTTGATAGCTGTGTTGACTGGTGGAGTGACGCTGTTCTTCCTATCAGGAAGG GGCCTAGGGAAAACATCTATCGGCCTACTYTGCGTGATGGCTTCAAGCGTACTGCTATGGATAGCCAGTG TAGAGCCCCATTGGATAGCGGCCTCCATCATACTGGAGTTCTTTCTGATGGTGCTGCTTATTCCAGAGCC AGACAGACAACGCACTCCGCAGGACAACCAGTTGGCATATGTGGTGATAGGTTTGTTATTCATGATACTG ACAGTAGCAGCCAATGAGATGGGACTGCTGGAAACCACAAAGAAAGACTTAGGGATTGGCCATGTGGCTG TTGAAAATCACCACCATGCCGCAATGCTGGACGTAGACTTACATCCAGCTTCAGCCTGGACCCTCTATGC AGTGGCCACAACAATTATCACTCCCATGATGAGGCACACAATCGAAAACACAACGGCAAACATTTCCCTG ACAGCCATTGCAAACCAGGCAGCGATATTGATGGGACTTGACAAAGGATGGCCAATATCAAAGATGGACA TAGGAGTTCCACTTCTCGCCTTGGGGTGCTATTCCCAGGTAAATCCACTGACGCTGACAGCGGCGGTATT GATGCTAGTGGCTCATTACGCTATAATTGGACCTGGACTGCAAGCAAAAGCTACTAGAGAAGCTCAAAAA AGGACAGCGGCCGGAATAATGAAAAATCCAACCGTTGATGGAATCGTTGCAATAGATTTGGACCCTGTGG TTTATGATGCGAAATTTGAGAAACAACTAGGCCAAATAATGTTGTTGATACTATGCACATCACAGATCCT CTTGATGCGGACTACATGGGCCTTGTGCGAATCCATCACACTGGCCACTGGACCTCTGACCACGCTCTGG GAGGGATCTCCAGGAAAATTTTGGAACACCACGATAGCAGTTTCCATGGCAAACATTTTCAGGGGAAGTT ATCTAGCAGGAGCAGGTCTGGCCTTCTCATTAATGAAATCTCTAGGAGGAGGTAGGAGAGGCACGGGAGC CCAAGGGGAAACACTGGGAGAGAAATGGAAAAGACAGCTGAACCAACTGAGCAAGTCAGAATTCAACACC TATAAAAGGAGTGGGATTATGGAAGTGGACAGATCCGAAGCCAAAGAAGGACTGAAAAGGGGAGAAACAA CCAAACATGCAGTGTCGAGAGGAACCGCTAAATTGAGGTGGTTTGTGGAGAGGAACCTTGTGAAACCAGA AGGGAAAGTCATAGACCTCGGTTGTGGAAGAGGTGGCTGGTCATACTATTGCGCTGGGCTGAAGAAAGTC ACAGAAGTGAAGGGATATACAAAAGGAGGACCTGGACATGAAGAACCAATCCCAATGGCGACCTATGGAT GGAACCTAGTAAAGCTGCACTCCGGGAAAGACGTATTCTTTATACCACCTGAGAAATGTGACACCCTTTT GTGTGATATTGGTGAGTCCTCTCCAAACCCAACTATAGAGGAAGGAAGAACGCTACGCGTCCTAAAGATG GTGGAACCATGGCTCAGAGGAAACCAATTTTGCATAAAAATTCTGAATCCCTACATGCCAAGTGTGGTGG AAACTCTGGAGCAAATGCAAAGAAAACATGGAGGAATGCTGGTGCGAAATCCACTTTCAAGAAATTCTAC TCATGAAATGTATTGGGTTTCATGTGGAACAGGAAACATTGTGTCAGCAGTAAACATGACATCCAGAATG TTGCTAAATCGATTCACAATGGCTCACAGGAAACCAACATATGAAAGAGACGTGGACCTAGGCGCCGGAA CAAGACATGTGGCAGTGGAACCAGAGGTAGCCAACCTAGATATCATTGGCCAGAGGATAGAGAACATAAA ACATGAACACAAGTCATCATGGCATTATGATGAGGACAATCCATATAAAACATGGGCCTATCATGGATCT TATGAGGTCAAGCCATCAGGATCAGCCTCATCCATGGTCAATGGCGTGGTGAAACTGCTCACCAAACCAT GGGATGTCATCCCCATGGTCACACAAATAGCCATGACTGACACTACACCCTTTGGACAACAGAGGGTGTT TAAAGAGAAAGTTGACACACGCACACCAAAAGCAAAACGAGGCACAGCACAAATCATGGAGGTGACAGCC AGGTGGTTATGGGGTTTTCTTTCTAGAAACAAGAAGCCAAGAATTTGTACAAGAGAGGAGTTCACAAGAA AAGTTAGGTCAAACGCAGCCATCGGAGCAGTGTTCGTTGACGAAAATCAATGGAACTCAGCAAAAGAAGC AGTGGAAGATGAGCGGTTCTGGGACCTTGTGCATAGAGAGAGGGAGCTTCACAAACAGGGAAAATGTGCC ACGTGTGTTTACAATATGATGGGGAAGAGAGAGAAAAAGCTAGGAGAGTTTGGAAAGGCAAAAGGAAGTC GTGCAATATGGTACATGTGGTTGGGAGCACGCTTTCTAGAGTTCGAAGCTCTTGGTTTCATGAACGAAGA CCACTGGTTCAGCAGAGAGAATTCACTCAGCGGAGTGGAAGGAGAAGGACTCCACAAACTTGGATATATA CTCAGAGACATATCAAAGATTCCAGGGGGAAACATGTATGCAGATGACACAGCCGGATGGGATACAAGGA TAACAGAGGATGATCTTCAGAATGAGGCCAAAATTACTGACATCATGGAACCCGAACATGCCCTACTGGC TAAGGCAATCTTCAAGCTAACCTACCAAAATAAAGTGGTAAGGGTACAGAGACCAGCAAAAAATGGAACC GTGATGGATGTCATATCCAGACGTGACCAGAGAGGAAGTGGCCAGGTCGGAACTTATGGCTTAAACACTT TCACCAACATGGAAGCCCAGCTGATAAGACAAATGGAGTCTGAGGGAATCTTTTCACCCAGTGAATTAGA GACCCCAAATTTAGCCGAGAGAGTTCTCGACTGGCTGGAAAAATATGGCGTCGAAAGGCTAAAAAGAATG GCAATCAGTGGAGATGACTGCGTAGTGAAACCAATTGATGATAGGTTTGCAACAGCCTTAACAGCTCTGA ATGATATGGGAAAAGTAAGAAAAGATATACCACAATGGGAACCCTCAAAAGGATGGAATGATTGGCAACA AGTGCCTTTTTGTTCACACCACTTCCACCAGCTGATTATGAAGGATGGGAGGGAAATAGTGGTGCCATGC CGCAACCAAGATGAACTTGTGGGTAGGGCTAGAGTATCACAAGGTGCTGGATGGAGCCTGAGAGAAACCG CATGCCTAGGCAAATCATATGCACAAATGTGGCAGCTGATGTACTTCCACAGGAGAGACCTGAGACTGGC CGCTAATGCTATCTGTTCAGCCGTTCCAGTTGATTGGGTCCCAACCAGCCGCACCACCTGGTCGATCCAT GCCCATCACCAATGGATGACAACAGAAGACATGCTGTCAGTGTGGAACAGAGTTTGGATAGAGGAAAACC CATGGATGGAGGACAAAACCCATATATCCAGTTGGGAAGATGTTCCATATTTAGGGAAAAGGGAAGATCA ATGGTGTGGATCCCTGATAGGCTTAACAGCAAGGGCCACCTGGGCCACCAACATACAAGTGGCCATAAAC CAAGTGAGAAGACTAATTGGGAATGAGAATTATCTAGATTACATGACATCAATGAAGAGATTCAAGAACG AGAGTGATCCCGAAGGGGCACTCTGGTGA 2015-10-17 14:01:25.340 UTC reps00 100 2015-10-17 08:51:10.570 UTC outgrno00 13 2015-10-17 08:51:27.529 UTC outfile_PARS0outtreefile_PARS0report_cons_PARS0report_PARS0report_bootstrap0outfile_DIST0report_cons_ML0outfile_ML0SimilarityScore0Alignment_Plot_PNG1Show_Align_Multiple0output_ClustalO0outtreefile_DIST0report_cons_DIST0outtreefile_ML0report_ML0GapsTrimmed_MSAResults0BOOTSTRAPPINGreps0direct_data0fullPath_output00report00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDNA_PARSIMONYoutgrno0fseqbootfile0fullPath_treefile00report00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDRAW_CONSENSE_PARSintreefile0outgrno0outfile00outtreefile00report00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDRAW_CONSENSE_DISToutgrno0intreefile0outfile00outtreefile00report00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDNA_MLoutgrno0fseqbootfile0fullPath_treefile00report00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDRAW_CONSENSE_MLoutgrno0intreefile0report00outfile00outtreefile00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCLUSTALO_PHYLIPsequence0output00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCLUSTALO_PIM_SIMSCOREsequence0SimilarityScore00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokePRETTYPLOTdirect_data0Pretty_Plot_Align11net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSHOWALIGNdirect_data0outfile00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDNA_DISTANCE_NJfseqbootfile0outgrno0fullPath_treefile00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMSAGAPSTRIMMINGMSA_Results_Phylip0GapsTrimmed_MSAResults00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBOOTSTRAPPINGrepsrepsBOOTSTRAPPINGdirect_dataMSAGAPSTRIMMINGGapsTrimmed_MSAResultsDNA_PARSIMONYoutgrnooutgrnoDNA_PARSIMONYfseqbootfileBOOTSTRAPPINGfullPath_outputDRAW_CONSENSE_PARSintreefileDNA_PARSIMONYfullPath_treefileDRAW_CONSENSE_PARSoutgrnooutgrnoDRAW_CONSENSE_DISToutgrnooutgrnoDRAW_CONSENSE_DISTintreefileDNA_DISTANCE_NJfullPath_treefileDNA_MLoutgrnooutgrnoDNA_MLfseqbootfileBOOTSTRAPPINGfullPath_outputDRAW_CONSENSE_MLoutgrnooutgrnoDRAW_CONSENSE_MLintreefileDNA_MLfullPath_treefileCLUSTALO_PHYLIPsequencedirect_dataCLUSTALO_PIM_SIMSCOREsequencedirect_dataPRETTYPLOTdirect_dataMSAGAPSTRIMMINGGapsTrimmed_MSAResultsSHOWALIGNdirect_dataMSAGAPSTRIMMINGGapsTrimmed_MSAResultsDNA_DISTANCE_NJfseqbootfileBOOTSTRAPPINGfullPath_outputDNA_DISTANCE_NJoutgrnooutgrnoMSAGAPSTRIMMINGMSA_Results_PhylipCLUSTALO_PHYLIPoutputoutfile_PARSDRAW_CONSENSE_PARSoutfileouttreefile_PARSDRAW_CONSENSE_PARSouttreefilereport_cons_PARSDRAW_CONSENSE_PARSreportreport_PARSDNA_PARSIMONYreportreport_bootstrapBOOTSTRAPPINGreportoutfile_DISTDRAW_CONSENSE_DISToutfilereport_cons_MLDRAW_CONSENSE_MLreportoutfile_MLDRAW_CONSENSE_MLoutfileSimilarityScoreCLUSTALO_PIM_SIMSCORESimilarityScoreAlignment_Plot_PNGPRETTYPLOTPretty_Plot_AlignShow_Align_MultipleSHOWALIGNoutfileoutput_ClustalOCLUSTALO_PHYLIPoutputouttreefile_DISTDRAW_CONSENSE_DISTouttreefilereport_cons_DISTDRAW_CONSENSE_DISTreportouttreefile_MLDRAW_CONSENSE_MLouttreefilereport_MLDNA_MLreportGapsTrimmed_MSAResultsMSAGAPSTRIMMINGGapsTrimmed_MSAResults 7c72f326-ac5e-4b43-9b16-9194efe64f8f 2015-10-17 09:14:48.423 UTC d9bb0708-5958-43bf-b3b1-d021151cd6a2 2015-10-17 13:37:49.662 UTC 517eeab5-6e62-4314-9d39-b2942ea84568 2015-10-17 08:56:02.428 UTC e8d9725f-b776-4a89-97d4-3ce2114edcd3 2015-11-01 15:35:45.25 UTC 6ccc3c5f-4331-4ad0-88d5-8fa60c43f1db 2015-11-17 07:51:51.52 UTC 734fdf6f-cd4c-40f9-af54-f53c8019a186 2016-03-25 20:38:31.274 UTC 5a0a09b3-5080-4e05-97a2-25e560ee60d0 2015-11-02 13:47:43.219 UTC 267770fc-1cd5-48eb-8bc9-91d619ded214 2016-03-25 20:51:27.987 UTC 1100dfad-1e2c-419a-952c-82db1f5d6d6b 2015-10-17 10:14:49.715 UTC 3fd84f72-6358-4d72-b6a1-8060d64d8065 2016-03-25 20:50:26.852 UTC 0647f32a-51ce-48d6-ab28-d289de36c86c 2015-10-17 10:59:55.703 UTC 85c38af7-b563-46c6-9825-5b5084309862 2015-11-02 10:23:38.859 UTC 5fccb13c-bc9f-4dfa-b890-dff571c34e2b 2016-03-25 20:35:32.948 UTC 2d2a3f94-a909-4cb3-a5aa-bfe17fdaafa3 2015-10-17 08:51:40.12 UTC 5bb55bda-219e-46a5-a713-8c27377e7e37 2015-10-17 09:05:37.931 UTC 277d12ea-a0b1-4fe9-8d62-fdc165ae8a7c 2015-10-17 13:59:47.860 UTC bffc1cf6-48f8-4891-a6ce-9322ec716b80 2015-11-02 10:21:36.534 UTC 33230ae1-6a74-4f1c-b8b3-22bc2cd08562 2015-10-26 17:42:49.258 UTC d7a2b6f0-30d3-4208-8381-6672759eb68f 2015-11-02 19:05:57.808 UTC f8c697b2-4dda-4540-8951-97b641bf6c36 2015-10-17 09:41:43.625 UTC 66a8db41-bc82-4316-be0b-67d5a95013a4 2015-10-17 08:50:28.714 UTC 0aa5d53e-e452-412a-a935-b54de557a1db 2015-11-02 18:45:33.577 UTC a724df3c-bcde-436e-9158-8e8b7b438316 2015-10-17 14:01:33.474 UTC 13f4d69d-e2fc-428a-bf25-2d63498c71c6 2015-11-03 16:34:58.863 UTC 49a95980-66c6-4e4e-bda1-f730be58e257 2015-11-02 19:09:46.958 UTC 8b1073d7-8aca-4476-8499-d84aa236d242 2015-11-02 10:26:34.745 UTC 0b5d224a-e2ba-4bf0-9da2-90fa6d7eca0e 2015-10-17 09:17:22.516 UTC 207da8a0-c30d-4d6b-a870-a24a5156abaf 2016-03-25 20:33:00.93 UTC a8ce98e9-9bcf-42b7-8e1f-c19b5fb1a5f9 2015-10-17 13:38:29.279 UTC 10b7eb7f-770e-449a-a676-40b80a39df28 2016-03-25 20:48:15.960 UTC 3aa578aa-fbc8-4184-96a3-10654f41ce1a 2015-10-17 13:50:32.8 UTC 43171bc7-6a22-46fd-83c6-18f94c494dde 2015-11-02 19:12:34.414 UTC cf0ac58d-8e89-483b-a20f-44ec617a59b9 2015-11-17 07:18:21.855 UTC nestedjobId00jobStatus0getStatusparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_molecular_sequence.fdnadist?wsdl getStatus net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatus" name="parameters" qname="{http://soaplab.org/typedws}getStatus"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getStatusRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getStatusRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_outputinput0jobStatus00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobStatus 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatusResponse" name="parameters" qname="{http://soaplab.org/typedws}getStatusResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobStatus" qname="jobStatus&gt;jobStatus" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatusparametersgetStatus_inputoutputgetStatus_inputjobIdgetStatus_jobIdoutputgetStatus_jobIdjobIdjobIdgetStatus_outputinputgetStatusparametersjobStatusgetStatus_outputjobStatus 92db99bf-007f-405d-9e76-96e3393d9fd1 2015-10-08 19:09:09.775 UTC nested 2015-10-08 19:08:34.944 UTC Workflow7sequence00jobId0status0output0run_ebi_clustalOparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://www.ebi.ac.uk/Tools/services/soap/clustalo?wsdl run net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResultparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://www.ebi.ac.uk/Tools/services/soap/clustalo?wsdl getResult net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_ebi_clustalO_inputparameters0email0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity email 0 'text/plain' false title 0 'text/plain' false parameters 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="run" name="parameters" qname="{http://soap.jdispatcher.ebi.ac.uk}run"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="email" qname="&gt;run&gt;email"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>User email address</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="title" qname="&gt;run&gt;title"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>A title to identify the analysis job</xsd:documentation></xsd:annotation></s:basetype><s:complextype optional="false" unbounded="false" typename="InputParameters" name="parameters" qname="&gt;run&gt;parameters"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>The list of parameters to be used for launching the analysis</xsd:documentation></xsd:annotation><s:elements><s:basetype optional="true" unbounded="false" typename="boolean" name="guidetreeout" qname="InputParameters&gt;guidetreeout"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Output guide tree [Output guide tree.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="dismatout" qname="InputParameters&gt;dismatout"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Output distance matrix [Output distance matrix. This is only calculated if the mBed-like clustering guide tree is set to false.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="dealign" qname="InputParameters&gt;dealign"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Dealign input sequences [Remove any existing alignment (gaps) from input sequences.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="mbed" qname="InputParameters&gt;mbed"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>mBed-like clustering guide tree [This option uses a sample of the input sequences and then represents all sequences as vectors to these sequences, enabling much more rapid generation of the guide tree, especially when the number of sequences is large.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="mbediteration" qname="InputParameters&gt;mbediteration"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>mBed-like clustering iteration [Use mBed-like clustering during subsequent iterations.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="iterations" qname="InputParameters&gt;iterations"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Number of iterations [Number of (combined guide-tree/HMM) iterations.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="gtiterations" qname="InputParameters&gt;gtiterations"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Maximum guide tree iterations [Having set the number of combined iterations, this parameter can be changed to limit the number of guide tree iterations within the combined iterations.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="hmmiterations" qname="InputParameters&gt;hmmiterations"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Maximum HMM iterations [Having set the number of combined iterations, this parameter can be changed to limit the number of HMM iterations within the combined iterations.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="outfmt" qname="InputParameters&gt;outfmt"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Output alignment format [Format for generated multiple sequence alignment.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="order" qname="InputParameters&gt;order"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Output order [The order in which the sequences appear in the final alignment]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="stype" qname="InputParameters&gt;stype"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence Type [Defines the type of the sequences to be aligned]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="sequence" qname="InputParameters&gt;sequence"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence [Three or more sequences to be aligned can be entered directly into this box. Sequences can be be in GCG, FASTA, EMBL, GenBank, PIR, NBRF, PHYLIP or UniProtKB/Swiss-Prot format. Partially formatted sequences are not accepted. Adding a return to the end of the sequence may help certain applications understand the input. Note that directly using data from word processors may yield unpredictable results as hidden/control characters may be present. There is currently a limit of 2000 sequences and 2MB of data.]</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeclustalO_inputsequence0outfmt0stype0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity guidetreeout 0 'text/plain' false dismatout 0 'text/plain' false dealign 0 'text/plain' false mbed 0 'text/plain' false mbediteration 0 'text/plain' false iterations 0 'text/plain' false gtiterations 0 'text/plain' false hmmiterations 0 'text/plain' false outfmt 0 'text/plain' false order 0 'text/plain' false stype 0 'text/plain' false sequence 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="InputParameters" name="parameters" qname="&gt;run&gt;parameters"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>The list of parameters to be used for launching the analysis</xsd:documentation></xsd:annotation><s:elements><s:basetype optional="true" unbounded="false" typename="boolean" name="guidetreeout" qname="InputParameters&gt;guidetreeout"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Output guide tree [Output guide tree.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="dismatout" qname="InputParameters&gt;dismatout"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Output distance matrix [Output distance matrix. This is only calculated if the mBed-like clustering guide tree is set to false.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="dealign" qname="InputParameters&gt;dealign"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Dealign input sequences [Remove any existing alignment (gaps) from input sequences.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="mbed" qname="InputParameters&gt;mbed"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>mBed-like clustering guide tree [This option uses a sample of the input sequences and then represents all sequences as vectors to these sequences, enabling much more rapid generation of the guide tree, especially when the number of sequences is large.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="mbediteration" qname="InputParameters&gt;mbediteration"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>mBed-like clustering iteration [Use mBed-like clustering during subsequent iterations.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="iterations" qname="InputParameters&gt;iterations"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Number of iterations [Number of (combined guide-tree/HMM) iterations.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="gtiterations" qname="InputParameters&gt;gtiterations"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Maximum guide tree iterations [Having set the number of combined iterations, this parameter can be changed to limit the number of guide tree iterations within the combined iterations.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="hmmiterations" qname="InputParameters&gt;hmmiterations"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Maximum HMM iterations [Having set the number of combined iterations, this parameter can be changed to limit the number of HMM iterations within the combined iterations.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="outfmt" qname="InputParameters&gt;outfmt"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Output alignment format [Format for generated multiple sequence alignment.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="order" qname="InputParameters&gt;order"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Output order [The order in which the sequences appear in the final alignment]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="stype" qname="InputParameters&gt;stype"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence Type [Defines the type of the sequences to be aligned]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="sequence" qname="InputParameters&gt;sequence"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence [Three or more sequences to be aligned can be entered directly into this box. Sequences can be be in GCG, FASTA, EMBL, GenBank, PIR, NBRF, PHYLIP or UniProtKB/Swiss-Prot format. Partially formatted sequences are not accepted. Adding a return to the end of the sequence may help certain applications understand the input. Note that directly using data from word processors may yield unpredictable results as hidden/control characters may be present. There is currently a limit of 2000 sequences and 2MB of data.]</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeemail_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity kasikrit@gmail.com net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeoutfmt_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity phylip net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_ebi_clustalO_outputinput0jobId00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobId 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="runResponse" name="parameters" qname="{http://soap.jdispatcher.ebi.ac.uk}runResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="&gt;runResponse&gt;jobId"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>A unique identifier for the analysis job</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResult_inputjobId0type0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false type 0 'text/plain' false parameters 1 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResult" name="parameters" qname="{http://soap.jdispatcher.ebi.ac.uk}getResult"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="&gt;getResult&gt;jobId"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>An identifier for the job to check</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="false" unbounded="false" typename="string" name="type" qname="&gt;getResult&gt;type"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>The renderer to be used to format the output</xsd:documentation></xsd:annotation></s:basetype><s:arraytype optional="true" unbounded="false" wrapped="false" typename="wsRawOutputParameters" name="parameters" qname="&gt;getResult&gt;parameters"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>A list of parameters to be passed on to the renderer</xsd:documentation></xsd:annotation><s:elementtype><s:complextype optional="false" unbounded="false" typename="wsRawOutputParameter" name="" qname="{http://soap.jdispatcher.ebi.ac.uk}wsRawOutputParameter"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="name" qname="wsRawOutputParameter&gt;name"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>The name of the parameter</xsd:documentation></xsd:annotation></s:basetype><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfString" name="value" qname="wsRawOutputParameter&gt;value"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>The parameter value as an array of String</xsd:documentation></xsd:annotation><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="" qname="{http://www.w3.org/2001/XMLSchema}string" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResult_outputinput0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false output 0 'application/octet-stream' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResultResponse" name="parameters" qname="{http://soap.jdispatcher.ebi.ac.uk}getResultResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="base64Binary" name="output" qname="&gt;getResultResponse&gt;output"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Base64 encoded data corresponding to the output of the job formatted by the renderer</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGETSTATUSjobId0status00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.5</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>status</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + status.matches(".*RUNNING.*"); if ("true".matches(loop)) { Thread.sleep(2000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketype_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity aln-phylip net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokestype_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity dna net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_ebi_clustalOparametersrun_ebi_clustalO_inputoutputgetResultparametersgetResult_inputoutputrun_ebi_clustalO_inputparametersclustalO_inputoutputrun_ebi_clustalO_inputemailemail_valuevalueclustalO_inputsequencesequenceclustalO_inputoutfmtoutfmt_valuevalueclustalO_inputstypestype_valuevaluerun_ebi_clustalO_outputinputrun_ebi_clustalOparametersgetResult_inputjobIdrun_ebi_clustalO_outputjobIdgetResult_inputtypetype_valuevaluegetResult_outputinputgetResultparametersGETSTATUSjobIdrun_ebi_clustalO_outputjobIdjobIdrun_ebi_clustalO_outputjobIdstatusGETSTATUSstatusoutputgetResult_outputoutput 0f5be853-39f8-47c2-8895-b6ea48b6adab 2015-10-11 10:46:08.157 UTC 22984cf0-bc7b-4723-b94c-3f0ad74cd6cd 2015-10-11 09:05:29.774 UTC 48b0deef-2961-40cf-bf13-7ad981374709 2015-10-17 13:49:07.513 UTC 85ed5936-381c-4b39-b6a3-8b3ed295d205 2015-10-11 09:08:07.998 UTC c63c9a44-c024-42c7-b9d5-d30ab7ba973c 2015-10-11 10:46:50.240 UTC fbc24586-97cf-471a-b011-f164cdbee929 2015-10-11 10:43:04.473 UTC d16660e9-7b1d-4266-9f59-8a746b674dde 2015-10-11 09:07:13.347 UTC f8c3ed4c-363f-42d9-9309-2ac5bd1cc2ce 2015-10-11 08:55:31.309 UTC 9451609b-e84b-44e8-a127-4260036f63b9 2015-10-17 13:49:32.658 UTC 7bdfffb0-1012-4059-8e6b-957d2714db9d 2015-10-11 08:58:35.396 UTC 4b6d28ef-2619-45b8-947a-f14ad6c3e710 2015-10-11 08:57:17.246 UTC Workflow15outgrno00 13 2015-10-13 16:40:37.878 UTC intreefile00 /home/kasikrit/Taverna/NCBI_Dengue/FileRef/fdnapars-10/outtreefile.text 2015-10-17 09:03:04.518 UTC jobId0jobStatus0outfile0outtreefile0report0getResultsparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_consensus.fconsense?wsdl getResults net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclearparameters0net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_consensus.fconsense?wsdl clear net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_fconsense_local_outputinput0jobId00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobId 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="runResponse" name="parameters" qname="{http://soaplab.org/typedws}runResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="runResponse&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeroot_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResults" name="parameters" qname="{http://soaplab.org/typedws}getResults"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_outputinput0outfile00outtreefile00report00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false report 0 'text/plain' 0 detailed_status 0 'text/plain' 0 outfile 0 'text/plain' 0 outfile_url 0 'text/plain' 0 outtreefile 0 'text/plain' 0 outtreefile_url 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResultsResponse" name="parameters" qname="{http://soaplab.org/fconsense}getResultsResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="report" qname="appResults&gt;report" /><s:basetype optional="true" unbounded="false" typename="long" name="detailed_status" qname="appResults&gt;detailed_status" /><s:basetype optional="true" unbounded="false" typename="string" name="outfile" qname="appResults&gt;outfile" /><s:basetype optional="true" unbounded="false" typename="string" name="outfile_url" qname="appResults&gt;outfile_url" /><s:basetype optional="true" unbounded="false" typename="string" name="outtreefile" qname="appResults&gt;outtreefile" /><s:basetype optional="true" unbounded="false" typename="string" name="outtreefile_url" qname="appResults&gt;outtreefile_url" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokenestedjobId0jobStatus00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.5</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>jobStatus</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + jobStatus.equals("RUNNING"); if ("true".matches(loop)) { Thread.sleep(2000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclear_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="clear" name="parameters" qname="{http://soaplab.org/typedws}clear"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="clearRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclear_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="clearRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerunparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_consensus.fconsense?wsdl run net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_inputroot0intreefile0outgrno0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity intreefile 0 'text/plain' false method 0 'text/plain' false mlfrac 0 'text/plain' false root 0 'text/plain' false outgrno 0 'text/plain' false trout 0 'text/plain' false progress 0 'text/plain' false treeprint 0 'text/plain' false prntsets 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="run" name="parameters" qname="{http://soaplab.org/fconsense}run"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="intreefile" qname="appInputs&gt;intreefile" /><s:basetype optional="true" unbounded="false" typename="string" name="method" qname="appInputs&gt;method" /><s:basetype optional="true" unbounded="false" typename="float" name="mlfrac" qname="appInputs&gt;mlfrac" /><s:basetype optional="true" unbounded="false" typename="boolean" name="root" qname="appInputs&gt;root" /><s:basetype optional="true" unbounded="false" typename="long" name="outgrno" qname="appInputs&gt;outgrno" /><s:basetype optional="true" unbounded="false" typename="boolean" name="trout" qname="appInputs&gt;trout" /><s:basetype optional="true" unbounded="false" typename="boolean" name="progress" qname="appInputs&gt;progress" /><s:basetype optional="true" unbounded="false" typename="boolean" name="treeprint" qname="appInputs&gt;treeprint" /><s:basetype optional="true" unbounded="false" typename="boolean" name="prntsets" qname="appInputs&gt;prntsets" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResultsparametersgetResults_inputoutputclearparametersclear_inputoutputrun_fconsense_local_outputinputrunparametersgetResults_inputjobIdgetResults_jobIdoutputgetResults_jobIdjobIdrun_fconsense_local_outputjobIdgetResults_outputinputgetResultsparametersnestedjobIdrun_fconsense_local_outputjobIdclear_inputjobIdclear_jobIdoutputclear_jobIdjobIdrun_fconsense_local_outputjobIdrunparametersrun_inputoutputrun_inputrootroot_valuevaluerun_inputintreefileintreefilerun_inputoutgrnooutgrnojobIdrun_fconsense_local_outputjobIdjobStatusnestedjobStatusoutfilegetResults_outputoutfileouttreefilegetResults_outputouttreefilereportgetResults_outputreport f6c52767-49a3-409e-90ab-f96c5ff7f31b 2015-10-13 16:11:35.61 UTC 9ca54719-8360-402d-9ba4-cd83c937026d 2015-10-13 16:40:39.605 UTC bade0670-136d-4c08-95b2-b23281777128 2015-10-15 18:52:48.37 UTC a03e0b97-3402-43c6-8aae-42b4f68933e8 2015-10-17 09:03:06.139 UTC 8a4976e2-0ce9-4ba3-92fb-f53cb75f65a4 2015-10-15 16:59:38.956 UTC afc73992-cb34-4c97-bfeb-af1ac8bb31c0 2015-10-15 16:39:58.78 UTC b8c8f940-7e0e-4239-94e7-04a929a5154e 2015-10-15 17:25:09.388 UTC e666ce8b-8df6-487b-8d4d-0f6a425f18aa 2015-10-15 16:28:11.909 UTC bda6819e-5610-452a-be2f-288737541799 2015-10-15 17:24:00.626 UTC acf9e94b-359e-48a7-8918-af02132520b6 2015-10-15 16:45:57.109 UTC ad115fcf-5f88-41d7-b6f2-1bb62e230c55 2015-10-15 17:26:09.21 UTC a63183cf-6275-4c91-b0a7-6ab64902adc7 2015-10-15 17:07:09.430 UTC Workflow47outgrno00 13 2015-10-16 16:18:03.559 UTC fseqbootfile00fullPaht_outfile_DIST0fullPath_outfile_NJ0fullPath_treefile0report_DIST0report_NJ0DISTANCEMATRIXfseqbootfile0fullPath_output00report00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeNEIGHTBOR_JOININGdatafile_reference0outgrno0fullPath_outfile00fullPath_treefile00report00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDISTANCEMATRIXfseqbootfilefseqbootfileNEIGHTBOR_JOININGdatafile_referenceDISTANCEMATRIXfullPath_outputNEIGHTBOR_JOININGoutgrnooutgrnofullPaht_outfile_DISTDISTANCEMATRIXfullPath_outputfullPath_outfile_NJNEIGHTBOR_JOININGfullPath_outfilefullPath_treefileNEIGHTBOR_JOININGfullPath_treefilereport_DISTDISTANCEMATRIXreportreport_NJNEIGHTBOR_JOININGreport 23328770-8698-4cfd-9f46-efeb96934c14 2015-10-16 16:15:25.373 UTC eb6a9062-118f-4997-b67c-a07ae9c0997e 2015-10-16 17:10:10.915 UTC e1093dc2-b696-41a8-bfcf-8cc930584797 2015-10-16 16:32:15.457 UTC f33dfab1-1008-4076-9313-7d6c67c11496 2015-10-16 17:06:54.369 UTC 52aa6737-f5c4-4581-a9a5-08b9507707ea 2015-10-16 16:10:57.752 UTC 0c6df7fc-9e89-4ca9-9dc0-82af790600f7 2015-10-16 17:01:13.545 UTC 9c883fcd-fe13-49fb-9f47-49c2431fdb1a 2015-11-02 18:26:23.734 UTC 0d88ba2d-2717-4e1e-b3bb-33ef7f666948 2015-10-16 17:28:32.869 UTC 2526d764-2880-41e1-972e-75f1e7486be0 2015-11-02 16:31:58.337 UTC 349d68b7-3206-4220-92fb-f9fee22bb517 2015-10-16 15:28:12.447 UTC 25b0c13c-8e2e-496e-b9fd-061037050570 2015-10-16 15:23:39.309 UTC 82e9fb4c-93e9-496d-97b7-d946544e24ae 2015-10-16 16:00:03.872 UTC e7bc5add-82d1-49bd-958d-a08dba17634a 2015-10-16 17:32:30.544 UTC 9ab5d7a2-6a6b-4f85-a456-4d102a8ad853 2015-11-02 15:18:36.136 UTC a846744f-11b1-4474-b7de-89a425eff7fc 2015-11-02 15:03:42.771 UTC 6fed1dda-38f7-43fb-a175-5a2190e4c980 2015-10-16 16:25:21.387 UTC 3f2b9db0-8e03-4c22-bb0d-89361c4a98fb 2015-10-16 17:11:03.69 UTC 2a3a782c-c21f-449f-80e4-955590441a36 2015-10-16 17:04:34.437 UTC 28e4b762-a23b-4378-a755-d492c2dcfb49 2015-10-16 15:42:56.41 UTC 502731d4-1283-4172-afe0-501778704f93 2015-10-16 17:33:35.953 UTC 090179fb-256b-48f3-8343-a116dc5d83df 2015-10-16 16:18:05.653 UTC 097b2130-aa3d-44bd-88f4-67eaa8f18711 2015-10-16 17:14:28.261 UTC nestedjobId00jobStatus0getStatusparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_molecular_sequence.fdnapars?wsdl getStatus net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatus" name="parameters" qname="{http://soaplab.org/typedws}getStatus"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getStatusRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getStatusRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_outputinput0jobStatus00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobStatus 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatusResponse" name="parameters" qname="{http://soaplab.org/typedws}getStatusResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobStatus" qname="jobStatus&gt;jobStatus" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatusparametersgetStatus_inputoutputgetStatus_inputjobIdgetStatus_jobIdoutputgetStatus_jobIdjobIdjobIdgetStatus_outputinputgetStatusparametersjobStatusgetStatus_outputjobStatus nested 2015-10-10 17:28:16.477 UTC c57f8963-6da7-4bf7-8f64-49ae74bbbd3b 2015-10-10 17:28:53.466 UTC Workflow58JobId00fullPath_output0Concatenate_two_stringsstring10string20output00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokebasePathvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity /home/kasikrit/apache-tomcat-8.0.26/webapps/soaplab2/results/ net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_two_strings_2string10string20output00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke_outfilevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity _outfile net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_two_stringsstring1basePathvalueConcatenate_two_stringsstring2JobIdConcatenate_two_strings_2string1Concatenate_two_stringsoutputConcatenate_two_strings_2string2_outfilevaluefullPath_outputConcatenate_two_strings_2output 0150a8c6-0e6a-4cc7-948e-3d7716923458 2015-10-15 09:56:32.133 UTC 6db2137f-4385-42b8-bc48-4a3abf597301 2015-10-15 09:54:39.782 UTC nestedjobId00jobStatus0getStatusparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_molecular_sequence.fdnaml?wsdl getStatus net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatus" name="parameters" qname="{http://soaplab.org/typedws}getStatus"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getStatusRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getStatusRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_outputinput0jobStatus00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobStatus 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatusResponse" name="parameters" qname="{http://soaplab.org/typedws}getStatusResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobStatus" qname="jobStatus&gt;jobStatus" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatusparametersgetStatus_inputoutputgetStatus_inputjobIdgetStatus_jobIdoutputgetStatus_jobIdjobIdjobIdgetStatus_outputinputgetStatusparametersjobStatusgetStatus_outputjobStatus b303b07b-e9a1-4937-a8b7-35d374f70950 2015-10-16 19:37:56.292 UTC nested 2015-10-16 19:35:09.561 UTC Draw_a_sequence_aligdirect_data00 15 449 _T.k9_ TAAAAAAAGG CTCAAACTGG GATTAGATAC CCCACTATGC CTAGCCTTAA _T.k.10_ ---------- --CAAACTGG GATTAGATAC CCCACTATGC CTAGCCTTAA _T.k1_ ---------- -TCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.k2_ -TAAAAAGGC TTCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.k7_ -TAAAAAGGC TTCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.k4_ ---------- -TCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.k3_ -TAAAAAGGC TTCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.k8_ --TAAAAAGC TTCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.m15_ ---AAAAAGC TTCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.m16_ --TAAAAAGC TTCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.ablolab---------- ---------- ---------- ---------- ---------- _T.a11_ --TAAAAAGC TTCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.p13_ ---------C TTCAAACTGG GATTAGATAC CCCACTATGC CTAACTATAA _T.p14_ ---------- ---------- ---------- ----CTATGC CTAACTATAA _T.p9_ -TAAAAAAGG CTCAAACTGG GATTAGATAC CCCACTATGC CTAGCTATAA CACACAATCA AACTACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACTACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACCACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACCACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACCACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACCACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACCACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACCACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACCACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACCACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC -----GAT-A AACTCCGCAG TTGTGTCGCC AATACAACTA CGAGTAATAC CACACAATCA AACTACA-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CATACAATCA AACTACA-AA TTGT-TCGCC AA-ACAACTA CGAGAAATAC CATACAATCA AACTACA-AA TTGT-TCGCC AA-ACAACTA CGAGAAATAC CACACAATCA AACTACA-AA TTGT-TCGCC AA-ACAACTA CGAGAAATAC TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCA-CCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCA-CCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCAGCCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCAGCCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCAGCCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCAGCCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCAGCCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCAGCCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCAGCCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCAGCCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCGACCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGN CGGTACTTCA CCCCGACCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA TCCCGACCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA TCCCGACCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA TCCCGACCTA GAGGAGCCTG TCCAATAACC GACAACCCAC GATTAACCCA ACCACTTCTC GCCCAACAGT TCCAATAACC GACAACCCAC GATTAACCCA ACCACTTCTC GCCCAACAGT TCCAATAACC GACAATCCAC GATTAACCCA ACCACTTCTC GCCTAACAGT TCCAATAACC GACAATCCAC GATTAACCCA ACCACTTCTC GCCTAACAGT TCCAATAACC GACAATCCAC GATTAACCCA ACCACTTCTC GCCTAACAGT TCCAATAACC GACAATCCAC GATTAACCCA ACCACTTCTC GCCTAACAGT TCCAATAACC GACAATCCAC GATTAACCCA ACCACTTCTC GCCTAACAGT TCCAATAACC GACAATCCAC GATTAACCCA ACCACTTCTC GCCTAACAGT TCCAATAACC GATAACCCAC GATTAACCCA ACCACTTCTC GCCCAACAGT TCCAATAACC GATAACCCAC GATTAACCCA ACCACTTCTC GCCCAACAGT TCTAATAACC GATAACCCAC GATTAACCCA ACCACTTCTT GCCCCACAGT TCTAATAACC GATAACCCAC GATTAACCCA ACCACTTCTT GCCCCACAGT TCTAATAACC GATAACCCAC GATTAACCCA ACCACTTCTT GCCCTACAGT TCTAATAACC GATAACCCAC GATTAACCCA ACCACTTCTT GCCCTACAGT TCTAATAACC GATAACCCAC GATTAACCCA ACCACTTCTT GCCCTACAGT CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGTCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGTCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCCA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCCA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCCA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCCA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCCA AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AATAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACCTA TGAAGAGG-C AATAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACCTA TGAAGAGG-C AATAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACCTA TGAAGAGG-T AATAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACCTA TGAAGAGG-T AATAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACCTA TGAAGAGG-T CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTCTGATATT CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTCTGATATT CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTATGAAATT CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTATGAAATT CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTATGAAATT CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTATGAAATT CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTATGAAATT CAAGATGGGC TACATTCTCC AATAGAGCAC ACGAACAACA CTATGAAATT CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTATGAAATT CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTATGAAATT TAAGATGGGC TACATTCTCT AACAGAGA-T ACGAACAACA CTATGAAATT TAAGATGGGC TACATTCTCT AACAGAGA-T ACGAACAACA CTATGAAATT TAAGATGGGC TACATTCTCC AACAGAGAAC ACGAACAACA CTATGAAATT TAAGATGGGC TACATTCTCC AACAGAGAAC ACGAACAACA CTATGAAATT TAAGATGGGC TACATTCTTT AACAGAGAAT ACGAACAACA CTATGAAATT AGCGTTTGAA GGCGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGCGTTTGAA GGCGGATTTA GCAGTAAGAT AAGAATGAAT AAAATACTTA AGTGTTCGAA GGAGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGTGTTCGAA GGAGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGTGTTCGAA GGAGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGTGTTCGAA GGAGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGTGTTCGAA GGAGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGTGTTCGAA GGAGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGTGTTCGAA GGAGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGT-----AA GGAGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGTGTTCGAA GGCGGATTTA GCAGTAAGAT AAGAAT---- AGAACACCTA AGTGTTCGAA GGCGGATTTA GCAGTAAGAT AAGAAT---- AGAACACCTA AGTGTTCAAA GGCGGATTTA GCAGTAAGAT AAGAAT---- AGAACACCTA AGTGTTCAAA GGCGGATTTA GCAGTAAGAT AAGAAT---- AGAACACCTA AATGTTCAAA GGCGGATTTA GCAGTAAGAT AAGAAT---- AGAACACCTA ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTTG-- ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTT--- ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTTG-- ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTTG-- ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTTG-- ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGT- AC------- ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCC----- ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTCTGG ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTCTG- ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCT---- ACTGAAAATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTTGG- ACTGAAAATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTTG-- ACTGAAAATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTCTGG ACTGAAAATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTCTG- ACTGAAAATA ACGCAATGAA G--------- ---------- --------- 2015-09-25 10:22:52.900 UTC output from alignment 2015-09-25 10:21:57.544 UTC Pretty_Plot_Align1report0jobStatus0run_prettyPlotparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://wsembnet.vital-it.ch/soaplab2/typed/services/alignment_multiple.prettyplot?wsdl run net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclearparameters0net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://wsembnet.vital-it.ch/soaplab2/typed/services/alignment_multiple.prettyplot?wsdl clear net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResultsparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://wsembnet.vital-it.ch/soaplab2/typed/services/alignment_multiple.prettyplot?wsdl getResults net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_prettyPlot_inputsequences0graph_format0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity sequences 0 'text/xml' false blocksperline 0 'text/plain' false graph_format 0 'text/plain' false matrixfile_direct_data 0 'text/plain' false matrixfile_url 0 'text/plain' false residuesperline 0 'text/plain' false ccolours 0 'text/plain' false cidentity 0 'text/plain' false csimilarity 0 'text/plain' false cother 0 'text/plain' false docolour 0 'text/plain' false shade 0 'text/plain' false pair 0 'text/plain' false identity 0 'text/plain' false doboxes 0 'text/plain' false boxcol 0 'text/plain' false boxuse 0 'text/plain' false name 0 'text/plain' false maxnamelen 0 'text/plain' false number 0 'text/plain' false listoptions 0 'text/plain' false ratio 0 'text/plain' false consensus 0 'text/plain' false collision 0 'text/plain' false alternative 0 'text/plain' false showscore 0 'text/plain' false portrait 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="run" name="parameters" qname="{http://soaplab.org/prettyplot}run"><s:elements><s:complextype optional="false" unbounded="false" typename="sequenceInput" name="sequences" qname="appInputs&gt;sequences"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="direct_data" qname="sequenceInput&gt;direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="usa" qname="sequenceInput&gt;usa" /><s:basetype optional="true" unbounded="false" typename="string" name="sformat" qname="sequenceInput&gt;sformat" /><s:basetype optional="true" unbounded="false" typename="int" name="sbegin" qname="sequenceInput&gt;sbegin"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Start of sequence(s) to be used </xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="send" qname="sequenceInput&gt;send"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>End of sequence(s) to be used </xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="sprotein" qname="sequenceInput&gt;sprotein"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence is protein</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="snucleotide" qname="sequenceInput&gt;snucleotide"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence is nucleotide</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="sreverse" qname="sequenceInput&gt;sreverse"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Reverse (if DNA)</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="slower" qname="sequenceInput&gt;slower"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Make lower case</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="supper" qname="sequenceInput&gt;supper"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Make upper case</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="long" name="blocksperline" qname="appInputs&gt;blocksperline" /><s:basetype optional="true" unbounded="false" typename="string" name="graph_format" qname="appInputs&gt;graph_format" /><s:basetype optional="true" unbounded="false" typename="string" name="matrixfile_direct_data" qname="appInputs&gt;matrixfile_direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="matrixfile_url" qname="appInputs&gt;matrixfile_url" /><s:basetype optional="true" unbounded="false" typename="long" name="residuesperline" qname="appInputs&gt;residuesperline"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>The number of residues to be displayed on each line</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="ccolours" qname="appInputs&gt;ccolours" /><s:basetype optional="true" unbounded="false" typename="string" name="cidentity" qname="appInputs&gt;cidentity" /><s:basetype optional="true" unbounded="false" typename="string" name="csimilarity" qname="appInputs&gt;csimilarity" /><s:basetype optional="true" unbounded="false" typename="string" name="cother" qname="appInputs&gt;cother" /><s:basetype optional="true" unbounded="false" typename="boolean" name="docolour" qname="appInputs&gt;docolour" /><s:basetype optional="true" unbounded="false" typename="string" name="shade" qname="appInputs&gt;shade"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Set to BPLW for normal shading (black, pale, light, white) so for pair = 1.5,1.0,0.5 and shade = BPLW Residues score Colour 1.5 or over... BLACK (B) 1.0 to 1.5 ... BROWN (P) 0.5 to 1.0 ... WHEAT (L) under 0.5 .... WHITE (W) The only four letters allowed are BPLW, in any order.</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="pair" qname="appInputs&gt;pair" /><s:basetype optional="true" unbounded="false" typename="long" name="identity" qname="appInputs&gt;identity" /><s:basetype optional="true" unbounded="false" typename="boolean" name="doboxes" qname="appInputs&gt;doboxes" /><s:basetype optional="true" unbounded="false" typename="boolean" name="boxcol" qname="appInputs&gt;boxcol" /><s:basetype optional="true" unbounded="false" typename="string" name="boxuse" qname="appInputs&gt;boxuse" /><s:basetype optional="true" unbounded="false" typename="boolean" name="name" qname="appInputs&gt;name" /><s:basetype optional="true" unbounded="false" typename="long" name="maxnamelen" qname="appInputs&gt;maxnamelen" /><s:basetype optional="true" unbounded="false" typename="boolean" name="number" qname="appInputs&gt;number" /><s:basetype optional="true" unbounded="false" typename="boolean" name="listoptions" qname="appInputs&gt;listoptions" /><s:basetype optional="true" unbounded="false" typename="float" name="ratio" qname="appInputs&gt;ratio" /><s:basetype optional="true" unbounded="false" typename="boolean" name="consensus" qname="appInputs&gt;consensus" /><s:basetype optional="true" unbounded="false" typename="boolean" name="collision" qname="appInputs&gt;collision" /><s:basetype optional="true" unbounded="false" typename="string" name="alternative" qname="appInputs&gt;alternative" /><s:basetype optional="true" unbounded="false" typename="long" name="showscore" qname="appInputs&gt;showscore" /><s:basetype optional="true" unbounded="false" typename="boolean" name="portrait" qname="appInputs&gt;portrait" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeprettyPlot_sequencesdirect_data0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity direct_data 0 'text/plain' false usa 0 'text/plain' false sformat 0 'text/plain' false sbegin 0 'text/plain' false send 0 'text/plain' false sprotein 0 'text/plain' false snucleotide 0 'text/plain' false sreverse 0 'text/plain' false slower 0 'text/plain' false supper 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="sequenceInput" name="sequences" qname="appInputs&gt;sequences"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="direct_data" qname="sequenceInput&gt;direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="usa" qname="sequenceInput&gt;usa" /><s:basetype optional="true" unbounded="false" typename="string" name="sformat" qname="sequenceInput&gt;sformat" /><s:basetype optional="true" unbounded="false" typename="int" name="sbegin" qname="sequenceInput&gt;sbegin"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Start of sequence(s) to be used </xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="send" qname="sequenceInput&gt;send"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>End of sequence(s) to be used </xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="sprotein" qname="sequenceInput&gt;sprotein"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence is protein</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="snucleotide" qname="sequenceInput&gt;snucleotide"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence is nucleotide</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="sreverse" qname="sequenceInput&gt;sreverse"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Reverse (if DNA)</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="slower" qname="sequenceInput&gt;slower"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Make lower case</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="supper" qname="sequenceInput&gt;supper"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Make upper case</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_prettyPlot_outputinput0jobId00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobId 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="runResponse" name="parameters" qname="{http://soaplab.org/typedws}runResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="runResponse&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResults" name="parameters" qname="{http://soaplab.org/typedws}getResults"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclear_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="clear" name="parameters" qname="{http://soaplab.org/typedws}clear"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="clearRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclear_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="clearRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokenestedjobId0jobStatus00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.5</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>jobStatus</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + jobStatus.matches(".*RUNNING.*"); if ("true".matches(loop)) { Thread.sleep(1000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Servicexml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.5net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <ns3:getResultsResponse xmlns:ns3="http://soaplab.org/prettyplot" xmlns:ns2="http://soaplab.org/typedws"><report>Summary: Completed: Successfully Termination status: 0 Started: 2015-Sep-25 12:28:55 (CEST) Ended: 2015-Sep-25 12:28:59 (CEST) Duration: 0:00:04.728 Report: Name: alignment_multiple.prettyplot Job ID: [alignment_multiple.prettyplot]_62088d16.14fda3eb41c._7e32 Program and parameters: prettyplot -sequences i_sequences -goutfile=o_Graphics_in_PNGpng -auto -graph=png --- end of parameters Exit code: 0 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/ns3:getResultsResponse/Graphics_in_PNG ns2 http://soaplab.org/typedws ns3 http://soaplab.org/prettyplot net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDecode_Base_64_to_byte_Arraybase640bytes00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity base64 0 'text/plain' java.lang.String true bytes 0 'application/octet-stream' 0 workflow commons-codec commons-codec 1.3 1635363350 commons-codec:commons-codec:1.3 commons-codec:commons-codec:1.3 org.embl.ebi.escience.scuflworkers.java.DecodeBase64 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokegraph_format_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity png net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_outputinput0report00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false report 0 'text/plain' 0 detailed_status 0 'text/plain' 0 Graphics_in_Postscript 0 'text/plain' 0 Graphics_in_Postscript_url 0 'text/plain' 0 Graphics_in_PNG 1 l('text/plain') 1 Graphics_in_PNG_url 1 l('text/plain') 1 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResultsResponse" name="parameters" qname="{http://soaplab.org/prettyplot}getResultsResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="report" qname="appResults&gt;report" /><s:basetype optional="true" unbounded="false" typename="long" name="detailed_status" qname="appResults&gt;detailed_status" /><s:basetype optional="true" unbounded="false" typename="string" name="Graphics_in_Postscript" qname="appResults&gt;Graphics_in_Postscript" /><s:basetype optional="true" unbounded="false" typename="string" name="Graphics_in_Postscript_url" qname="appResults&gt;Graphics_in_Postscript_url" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="base64Binary" name="Graphics_in_PNG" qname="appResults&gt;Graphics_in_PNG"><s:elementtype><s:basetype optional="false" unbounded="false" typename="base64Binary" name="" qname="{http://www.w3.org/2001/XMLSchema}base64Binary" /></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="string" name="Graphics_in_PNG_url" qname="appResults&gt;Graphics_in_PNG_url"><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="" qname="{http://www.w3.org/2001/XMLSchema}string" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_prettyPlotparametersrun_prettyPlot_inputoutputclearparametersclear_inputoutputgetResultsparametersgetResults_inputoutputrun_prettyPlot_inputsequencesprettyPlot_sequencesoutputrun_prettyPlot_inputgraph_formatgraph_format_valuevalueprettyPlot_sequencesdirect_datadirect_datarun_prettyPlot_outputinputrun_prettyPlotparametersgetResults_inputjobIdgetResults_jobIdoutputgetResults_jobIdjobIdrun_prettyPlot_outputjobIdclear_inputjobIdclear_jobIdoutputclear_jobIdjobIdrun_prettyPlot_outputjobIdnestedjobIdrun_prettyPlot_outputjobIdXPath_Servicexml_textgetResultsparametersDecode_Base_64_to_byte_Arraybase64XPath_ServicenodelistgetResults_outputinputgetResultsparametersPretty_Plot_AlignDecode_Base_64_to_byte_ArraybytesreportgetResults_outputreportjobStatusnestedjobStatus 212ad5f2-0adb-48a5-8f4f-bbb43dc4aa05 2015-09-25 10:29:47.673 UTC adca102b-72fb-47b4-85dd-f2e0c6ba1822 2015-09-25 10:28:41.934 UTC 9ccf1305-c0fd-492c-a83e-7fd49e39c7fa 2015-09-25 10:25:08.871 UTC 70a0616c-bad4-4d6c-8429-20c87ea6871b 2015-11-02 10:26:10.767 UTC d575c080-7ab4-423f-9580-b5c7e6633cf1 2015-09-25 15:11:31.924 UTC Draw a sequence alignment with pretty formatting 2015-09-25 15:11:29.982 UTC e2eadddf-f362-4247-9dd6-f7db75771088 2015-09-25 15:38:27.116 UTC 6bfaead4-3caa-4ef8-bc8d-92fbe9140567 2015-09-25 10:26:48.351 UTC a377ac06-d15e-4c44-a73a-c6bc7a5e7b50 2015-09-25 15:36:24.274 UTC 471420e0-82dd-41ae-b02c-2c9eba9e70f6 2015-09-25 15:42:07.951 UTC 78599094-4051-4671-bc07-8d687bff6a64 2015-09-25 10:25:18.238 UTC 816474fd-fb6b-4f7e-aafd-4e7c6c44d741 2015-09-25 15:39:54.911 UTC bb1ae8a3-d200-4375-adc0-e7447e28f3cb 2015-09-25 10:23:20.294 UTC nestedjobId00status0getStatusparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://www.ebi.ac.uk/Tools/services/soap/clustalo?wsdl getStatus net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatus" name="parameters" qname="{http://soap.jdispatcher.ebi.ac.uk}getStatus"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="&gt;getStatus&gt;jobId"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>An identifier for the job to check</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_outputinput0status00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false status 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatusResponse" name="parameters" qname="{http://soap.jdispatcher.ebi.ac.uk}getStatusResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="status" qname="&gt;getStatusResponse&gt;status"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>The status of the job (FINISHED, ERROR, RUNNING, NOT_FOUND or FAILURE)</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatusparametersgetStatus_inputoutputgetStatus_inputjobIdjobIdgetStatus_outputinputgetStatusparametersstatusgetStatus_outputstatus nested 2015-10-11 08:52:41.282 UTC 97aef5cb-8c53-45bd-97b4-a3cbfb5d09fb 2015-10-11 08:55:31.536 UTC Workflow58JobId00fullPath_outfile0fullPath_treefile0Concatenate_two_stringsstring10string20output00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokebasePathvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity /home/kasikrit/apache-tomcat-8.0.26/webapps/soaplab2/results/ net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegenOutfileNamestring10string20output00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke_outfilevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity _outfile net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegenTreefileNamestring10string20output00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke_outtreefile_treefilevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity _outtreefile.treefile net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_two_stringsstring1basePathvalueConcatenate_two_stringsstring2JobIdgenOutfileNamestring1Concatenate_two_stringsoutputgenOutfileNamestring2_outfilevaluegenTreefileNamestring1Concatenate_two_stringsoutputgenTreefileNamestring2_outtreefile_treefilevaluefullPath_outfilegenOutfileNameoutputfullPath_treefilegenTreefileNameoutput c1751925-c2c7-4550-b9a6-9fb18bcee541 2015-10-15 10:28:54.268 UTC 6db2137f-4385-42b8-bc48-4a3abf597301 2015-10-15 09:54:39.782 UTC 0150a8c6-0e6a-4cc7-948e-3d7716923458 2015-10-15 09:56:32.133 UTC nestedjobId00jobStatus0getStatusparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_consensus.fconsense?wsdl getStatus net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatus" name="parameters" qname="{http://soaplab.org/typedws}getStatus"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getStatusRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getStatusRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_outputinput0jobStatus00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobStatus 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatusResponse" name="parameters" qname="{http://soaplab.org/typedws}getStatusResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobStatus" qname="jobStatus&gt;jobStatus" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatusparametersgetStatus_inputoutputgetStatus_inputjobIdgetStatus_jobIdoutputgetStatus_jobIdjobIdjobIdgetStatus_outputinputgetStatusparametersjobStatusgetStatus_outputjobStatus 64e04113-6df2-4b9f-8774-dbf278817e32 2015-10-13 16:11:35.272 UTC nested 2015-10-13 16:10:10.124 UTC nestedjobId00jobStatus0getStatusparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://wsembnet.vital-it.ch/soaplab2/typed/services/alignment_multiple.prettyplot?wsdl getStatus net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatus" name="parameters" qname="{http://soaplab.org/typedws}getStatus"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getStatusRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getStatusRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_outputinput0jobStatus00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobStatus 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatusResponse" name="parameters" qname="{http://soaplab.org/typedws}getStatusResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobStatus" qname="jobStatus&gt;jobStatus" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatusparametersgetStatus_inputoutputgetStatus_inputjobIdgetStatus_jobIdoutputgetStatus_jobIdjobIdjobIdgetStatus_outputinputgetStatusparametersjobStatusgetStatus_outputjobStatus 6ece647b-2f7a-4388-9ebc-0feda0c686d1 2015-09-25 10:23:20.543 UTC nested 2015-09-25 10:21:04.153 UTC Workflow1direct_data00 2 10177 KF744397 ATGAATAACC AACGAAAAAA GGCGAGAAAA ACGCCTTTCA ATATGCTGAA gb|EU17985 ATGAATAACC AACGGAAAAA GGCGAGAAAT ACGCCTTTCA ATATGCTGAA ACGCGAGAGA AACCGCGTGT CAACTGTGCA GCAGCTGACA AAGAGATTCT CACTTGGAAT ACGCGAGAGA AACCGCGTGT CAACTGTGCA GCAGCTGACA AAGAGATTCT CACTTGGAAT GCTGCAGGGA CGAGGACCAT TGAAACTGTT CATGGCCCTG GTGGCATTCC TTCGTTTCCT GCTACAGGGA CGAGGACCAT TGAAACTGTT CATGGCCCTG GTGGCATTCC TTCGTTTCCT AACAATCCCG CCAACAGCAG GGATATTAAA AAGATGGGGA ACAATCAAAA AATCAAAGGC AACAATCCCG CCAACAGCAG GGATATTAAA AAGATGGGGA ACAATCAAAA AATCAAAGGC TATCAATGTC TTGAGAGGGT TCAGGAAAGA GATTGGAAGG ATGCTGAACA TCTTGAACAG TATCAATGTC TTGAGAGGGT TCAGGAAAGA GATCGGAAGG ATGCTGAACA TCTTGAACAG GAGACGCAGA ACTGCAGGTG TGATCATCAT GATGATTCCA ACAGTGGTGG CGTTCCATTT GAGACGCAGA ACTGCAGGTA TAATTATTAT GGTGATTCCA ACAGTGATGG CGTTCCATTT AACCACACGC AACGGAGAAC CACACATGAT CGTCAGTAGA CAAGAGAAAG GGAAAAGTCT AACCACACGC AACGGAGAAC CACACATGAT CGTCAGTAGA CAAGAGAAAG GGAAAAGTCT TCTGTTTAAA ACAGAGAACG GTGTGAACAT GTGTACCCTC ATGGCCTTGG ACCTTGGTGA TCTGTTTAAA ACAGAGAACG GTGTGAACAT GTGTACCCTT ATGGCCATGG ACCTTGGTGA ATTGTGTGAA GACACAATCA CTTATAATTG TCCTCTTCTC AGGCAGAATG AACCAGAAGA ACTGTGTGAA GACACAATCA CTTACAATTG TCCTCTTCTC AGGCAGAATG AACCAGAAGA CATAGACTGT TGGTGCAACT CTACGTCTAC ATGGGTAACT TATGGGACAT GCACCGCCAC CATAGACTGT TGGTGCAACT CTACGTCTAC ATGGGTAACT TATGGGACAT GCACCGCTAC AGGAGAACAC AGAAGGGAAA AAAGATCAGT GGCACTCGTT CCACATGTGG GAATGGGACT AGGAGAACAC AGAAGGGAAA AAAGATCAGT GGCACTCGTT CCACATGTGG GAATGGGACT GGAGACACGA ACTGAAACAT GGATGTCATC AGAAGGGGCC TGGAAACATG CTCAGAGAAT GGAGACACGA ACTGAAACAT GGATGTCATC AGAAGGGGCC TGGAAACATG CACAGAGAAT CGAAACTTGG GTCTTGAGAC ATCCAGGCTT TACCATAATG GCAGCAATCC TGGCATACAC TGAAACTTGG GTCTTGAGAC ATCCAGGCTT CACCATAATG GCAGCAATCC TGGCATACAC CATAGGAACG ACATATTTCC AAAGAGTCCT GATTTTCATC TTACTGACAG CTGTCGCTCC CATAGGAACG ACATATTTCC AAAGAGTCCT GATTTTCATC TTACTGACAG CTGTCGCTCC TTCAATGACA ATGCGTTGTA TAGGAATATC AAATAGAGAC TTTGTGGAAG GGGTTTCAGG TTCAATGACA ATGCGTTGTA TAGGAATATC AAATAGAGAC TTTGTGGAAG GGGTTTCAGG AGGAAGCTGG GTTGACATAG TCTTAGAACA TGGAAGCTGT GTGACGACGA TGGCGAAAAA AGGAAGCTGG GTTGACATAG TCTTGGAACA TGGAAGCTGT GTGACGACGA TGGCGAAAAA TAAACCAACA TTGGATTTTG AACTGACAAA AACGGAAGCC AAACATCCCG CCACTTTAAG CAAACCAACA TTGGATTTTG AACTGATAAA GACAGAAGCC AAACATCCCG CCACTCTAAG GAAGTATTGT ATAGAGGCAA AGCTGACCAA CACAACAACA GCATCTCGCT GCCCAACACA GAAGTATTGT ATAGAGGCAA AGCTGACCAA CACAACAACA GCATCTCGCT GCCCAACACA AGGAGAACCC AGCCTAAATG AAGAACAGGA CAAAAGGTTT GTCTGCAAAC ACTCCATGGT AGGAGAACCT AGCCTAAATG AAGAACAGGA CAAAAGATTT GTCTGCAAAC ACTCCATGGT AGACAGAGGA TGGGGAAATG GATGCGGATT ATTTGGAAAG GGAGGCATCG TGACCTGTGC AGACAGAGGA TGGGGAAATG GATGCGGATT ATTTGGAAAG GGAGGTATCG TGACCTGTGC AATGTTCACA TGCAAAAAGA ACATGGAAGG AAAAATCGTG CAACCAGAAA ACTTGGAGTA AATGTTCACA TGCAAAAAGA ACATGGAGGG AAAAATCGTG CAACCAGAAA ACTTGGAGTA CACCATTGTG ATAACACCTC ACTCAGGGGA AGAGAATGCA GTCGGAAATG ACACAGGAAA CACCATTGTG ATAACACCTC ACTCAGGGGA AGAGAATGCA GTCGGAAATG ACACAGGAAA ACACGGCAAG GAAATTAAAG TAACACCACA GAGTTCCATT ACAGAAGCAG AACTGACAGG ACACGGCAAG GAAATTAAAG TAACACCACA GAGTTCCATC ACAGATGCAG AACTAACAGG CTATGGCACT GTCACGATGG AATGCTCTCC GAGAACGGGC CTCGACTTTA ATGAGATGGT CTATGGCACT GTCACGATGG AATGCTCTCC GAGAACGGGA CTCGACTTCA ATGAGATGGT GTTGCTGCAA ATGGAAGACA AGGCTTGGCT GGTGCACAGG CAGTGGTTCT TAGACCTTCC GTTGCTGCAA ATGGAAAACA AGGCTTGGCT GGTGCACAGG CAATGGTTCT TAGACCTGCC GTTACCATGG CTGCCCGGAG CAGACACACA AGGATCAAAT TGGATACAGA AGGAGACATT ATTACCATGG CTGCCCGGAG CAGACACACA AGGATCAAAT TGGATACAGA AGGAGACATT GGTCACTTTC AAAMATCCCC ATGCGAAGAA ACAGGATGTT GTCGTTTTAG GATCCCAAGA GGTCACTTTC AAAAATCCCC ATGCAAAGAA ACAGGATGTT GTTGTTTTAG GATCCCAAGA AGGGGCTATG CATACAGCAC TCACAGGGGC CACGGAAATC CAGATGTCAT CAGGAAACTT AGGGGCTATG CACACAGCAC TCACAGGGGC CACGGAAATC CAGATGTCAT CAGGAAACTT ACTGTTCACA GGACATCTTA AGTGCAGGCT GAGAATGGAC AAACTACAGC TCAAAGGAAT ACTGTTCACA GGACATCTTA AATGTAGGCT GAGAATGGAC AAACTACAGC TCAAAGGAAT GTCATATTCT ATGTGTACAG GAAAGTTTAA AGTTGTGAAG GAAATAGCAG AAACACAACA GTCATATTCC ATGTGTACAG GAAAGTTCAA AGTTGTGAAG GAAATAGCAG AAACACAACA TGGAACAATA GTTATCAGAG TACAATATGA AGGGGACGGT TCTCCGTGCA AGATCCCTTT TGGAACAATA GTTATCAGAG TACAATATGA AGGGGACGGT TCTCCGTGCA AGATCCCTTT TGAAATAATG GATTTGGAAA AAAGACATGT CTTAGGTCGC TTGATCACAG TCAACCCAAT TGAAATAATG GATTTGGAAA AAAGACATGT CTTAGGTCGC TTGATTACAG TCAACCCAAT TGTTGCAGAA AAAGACAGCC CAGTCAACAT AGAAGCAGAA CCTCCATTCG GAGACAGTTA TGTCACAGAA AAAGACAGCC CAGTCAACAT AGAAGCAGAA CCCCCATTCG GAGACAGCTA CATCATTATA GGAGTAGAAC CGGGACAACT GAAGCTCAGC TGGTTTAAGA AAGGAAGTTC CATCATTATA GGAGTAGAAC CGGGACAACT GAAGCTCAGC TGGTTTAAGA AAGGAAGTTC TATTGGCCAA ATGTTTGAGA CAACAATGAG AGGAGCGAAG AGAATGGCCA TCTTAGGTGA TATTGGCCAA ATGTTTGAGA CAACAATGAG AGGAGCGAAG AGAATGGCCA TTTTAGGTGA CACAGCTTGG GATTTTGGAT CCCTGGGAGG AGTGTTCACA TCTATAGGAA AGGCCCTCCA CACAGCTTGG GATTTTGGAT CCCTGGGAGG AGTGTTCACA TCTATAGGAA AGGCCCTCCA CCAAGTCTTT GGAGCAATCT ATGGGGCTGC CTTTAGCGGG GTTTCATGGA CTATGAAAAT CCAAGTCTTT GGAGCAATCT ATGGGGCTGC CTTCAGTGGG GTTTCATGGA CTATGAAAAT CCTCATAGGA GTCGTCATCA CATGGATAGG AATGAATTCA CGCAGCACCT CACTGTCTGT CCTCATAGGA GTCGTCATCA CATGGATAGG AATGAATTCA CGCAGCACCT CACTGTCTGT GTCACTAGTA TTAGTGGGGG TCGTGACATT GTATTTGGGA GTCATGGTGC AGGCCGATAG GTCACTAGTA TTAGTGGGAG TCGTGACATT GTATTTGGGA GTTATGGTGC AGGCCGATAG TGGTTGCGTT GTGAGTTGGA GAAACAAAGA ACTGAAATGT GGTAGTGGGA TTTTTATCAC TGGTTGCGTT GTGAGCTGGA AAAACAAAGA ACTGAAATGT GGCAGTGGGA TTTTTATCAC AGACAACGTG CACACATGGA CAGAACAATA CAAATTCCAA CCAGAATCCC CTTCAAAGCT AGACAACGTG CACACATGGA CAGAACAATA CAAATTCCAA CCAGAATCCC CTTCAAAGCT GGCTTCAGCT ATCCAGAAGG CTCATGAAGA GGGCATTTGT GGAATCCGCT CAGTAACAAG GGCTTCAGCT ATCCAGAAGG CTCATGAAGA AGGCATTTGT GGAATCCGCT CAGTAACAAG ATTGGAGAAT CTGATGTGGA AACAAATAAC ACCAGAACTG AATCACATTC TATCAGAAAA ACTGGAGAAT CTGATGTGGA AACAAATAAC ACCAGAACTG AATCACATTC TATCAGAAAA TGAGGTAAAA TTGACTATCA TGACAGGAGA CATTAAAGGA ATCATGCAGG CAGGAAAACG TGAGGTGAAG TTGACTATCA TGACAGGAGA TATTAAAGGA ATCATGCAGG CAGGAAAACG ATCCCTGCGG CCCCAACCCA CTGAGCTGAA GTACTCTTGG AAAGCATGGG GCAAAGCGAA ATCCCTGCGG CCTCAACCCA CTGAGCTGAA GTACTCTTGG AAAGCATGGG GCAAAGCGAA AATGCTCTCC ACAGAGCTTC ATAACCACAC CTTTCTCATT GATGGCCCCG AAACAGCAGA AATGCTCTCC ACAGAGCTTC ATAACCACAC CTTTCTCATT GATGGCCCCG AAACAGCAGA ATGTCCCAAC ACAAACAGAG CTTGGAACTC ACTAGAAGTT GAAGACTATG GCTTTGGAGT ATGTCCCAAC ACAAACAGAG CTTGGAACTC ACTAGAGGTT GAAGACTATG GCTTTGGAGT ATTCACCACC AACATATGGC TGAAACTGAA AGAAAGGCAG GATGTATTTT GTGACTCAAA ATTCACCACC AACATATGGC TGAAATTGAA AGAAAGGCAG GATGTATTTT GTGACTCAAA ACTCATGTCA GCAGCCATAA GAGACAACAG GGCCGTCCAC GCCGATATGG GTTATTGGAT ACTCATGTCA GCAGCCATAA AAGACAACAG AGCCGTCCAC GCCGACATGG GTTATTGGAT AGAAAGCGCA CTTAATGACA CATGGAAGAT TGAGAAAGCC TCTTTTATTG AAGTTAAAAG AGAAAGCGCA CTCAATGACA CATGGAAGAT TGAGAAAGCC TCTTTTATTG AAGTTAAAAG CTGCCACTGG CCAAAGTCAC ACACTCTCTG GAGTAATGGA GTGCTAGAAA GTGAGATGAT CTGCCACTGG CCAAAGTCAC ACACTCTCTG GAGTAATGGA GTGCTAGAAA GTGAGATGAT AATTCCAAAG AATTTTGCAG GACCAGTGTC ACAGCACAAC TACAGACCAG GCTATCATAC AATTCCAAAG AATTTTGCAG GACCAGTGTC ACAACACAAT TACAGACCAG GCTATCATAC ACAAACGGCA GGACCCTGGC ATCTAGGTAA GCTTGAGATG GACTTTGATT TCTGCGAAGG ACAAACGGCA GGACCCTGGC ATCTAGGCAG GCTTGAGATG GACTTTGATT TCTGCGAAGG AACCACAGTG GTAGTGACTG AGGACTGTGG AAATAGAGGA CCCTCTTTAA GAACAACTAC AACCACAGTG GTGGTGACTG AGGACTGTGG AAATAGAGGA CCCTCTTTAA GAACAACTAC TGCTTCTGGA AAACTCATAA CAGAATGGTG CTGCCGATCT TGCACATTAC CACCGCTAAG TGCTTCTGGA AAACTCATAA CAGAATGGTG CTGCCGATCT TGCACATTAC CACCGCTAAG GTACAGAGGT GAGGATGGAT GCTGGTATGG AATGGAAATC AGGCCATTGA AAGAGAAAGA GTACAGAGGT GAGGATGGAT GCTGGTATGG AATGGAAATC AGACCATTGA AGGAGAAAGA AGAGAACTTG GTCAACTCTT TGGTCACAGC CGGACTTGGA CAGATTGACA ACTTCTCACT AGAGAACTTG GTCAACTCTT TGGTCACAGC CGGACATGGA CAGATTGACA ACTTCTCACT AGGAGTCTTG GGAATGGCA- TTGTTCCTGG AAGAAATGCT CAGGACCCGC GTAGGAACGA AGGAGTCTTG GG-ATGGCAT TTGTTCCTGG AAGAGATGCT CAGAACCCGA GTAGGAACGA AACATGCAAT ATTGCTAGTT GCAGTTTCTT TCGTGACATT GATCACAGGG AACATGTCTT AACATGCAAT ATTACTAGTT GCAGTCTCTT TCGTGACATT GATCACAGGG AACATGTCCT TTCGAGATTT GGGGAGAGTG ATGGTTATGG TGGGCGCTAC TATGACGGAT GACATAGGCA TTCGAGATTT GGGGAGAGTG ATGGTCATGG TGGGCGCTAC TATGACGGAT GACATAGGCA TGGGCGTGAC TTATCTTGCC CTATTAGCAG CCTTCAAAGT CAGACCAACT TTTGCAGCTG TGGGTGTGAC TTATCTTGCC CTATTAGCAG CCTTCAAGGT TAGACCAACT TTTGCAGCTG GACTACTCTT GAGAAAGCTG ACCTCCAAGG AATTAATGAT GACCACCATA GGAATCGTAC GACTACTCTT AAGAAAGCTG ACCTCCAAGG AATTGATGAT GACCACCATA GGAATCGTAC TCCTCTCTCA GAGCACCATA CCAGAGACTA TACTTGAACT GACTGACGCG CTGGCTTTGG TCCTCTCTCA GAGCACCATA CCAGAGACTA TACTTGAACT GACTGACGCA TTGGCTTTGG GGATGATGGT TCTCAAAATA GTGAGAAACA TGGAAAAGTA TCAACTAGCA GTGACTATCA GGATGATGGT TCTCAAAATA GTAAGAAACA TGGAAAAGTA TCAACTAGCA GTGACTATCA TGGCCATCTT GTGCGTCCCA AATGCAGTGA TATTACAAAA CGCATGGAAA GTGAGCTGCA TGGCTATCTT GTGCGTCCCA AATGCAGTGA TATTACAAAA CGCATGGAAA GTGAGCTGCA CAACACTGGC AGTGGTGTCC GTTTCCCCAC TGCTTTTAAC ATCCTCACAG CAGAAAGCAG CAACACTGGC AGTGGTGTCC GTTTCCCCAC TGCTTTTAAC ATCCTCACAG CAGAAAGCGG ATTGGATACC ACTGGCGTTG ACGATCAAAG GCCTCAATCC AACAGCCATT TTCTTAACAA ATTGGATACC ACTGGCGCTG ACGATCAAAG GCCTCAATCC AACAGCCATT TTCTTAACAA CCCTCTCAAG AACTAGCAAG AAAAGGAGCT GGCCACTAAA TGAGGCTATT ATGGCAGTCG CCCTCTCAAG AACTAGCAAG AAAAGGAGCT GGCCACTAAA TGAGGCTATT ATGGCAGTCG GGATGGTGAG CATTTTAGCC AGTTCTCTCT TAAAGAATGA TATTCCCATG ACAGGACCAT GGATGGTGAG CATTTTAGCC AGTTCTCTCT TAAAGAATGA TATTCCCATG ACAGGACCAT TAGTAGCTGG AGGGCTTCTC ACTGTGTGTT ACGTGCTCAC TGGAAGATCG GCTGATTTGG TGGTGGCTGG AGGGCTTCTC ACTGTGTGTT ACGTGCTCAC TGGAAGATCG GCTGATTTGG AACTGGAGAG AGCTGCTGAC GTAAGATGGG AAGAACAGGC AGAGATATCA GGAAGTAGTC AACTGGAGAG AGCTGCTGAC GTAAGATGGG AAGAACAGGC AGAGATATCA GGAAGCAGTC CAATTCTGTC AATAACAATA TCGGAAGATG GTAGCATGTC GATAAAAAAT GAAGAAGAAG CATTTCTGTC GATAACAATA TCGGAAGATG GTAGCATGTC GATAAAAAAT GAAGAAGAAG AACAAACACT GACCATACTC ATTAGGACAG GACTGCTGGT GATATCAGGA CTTTTTCCCG AACAAACACT GACCATACTG ATTAGAACAG GACTGCTGGT GATATCAGGA CTTTTTCCCG TGTCAATACC AATCACGGCA GCTGCATGGT ACCTGTGGGA AGTGAAAAAA CAACGAGCCG TGTCAATACC AATCACGGCA GCTGCATGGT ACCTGTGGGA AGTGAAAAAA CAACGAGCCG GAGTATTGTG GGATGTCCCT TCACCCCCAC CTGTGGGAAA GGCCGAACTG GAAGATGGAG GAGTATTGTG GGATGTCCCT TCACCTCCAC CTGTGGGAAA GGCCGAACTG GAAGATGGAG CCTATAGAAT CAAGCAGAAA GGGATTCTAG GATACTCGCA GATCGGGGCT GGAGTTTACA CCTATAGAAT CAAGCAGAAA GGGATTCTAG GATACTCGCA GATCGGAGCC GGAGTCTACA AAGAAGGAAC ATTCCACACA ATGTGGCACG TCACACGCGG TGCTGTCCTA ATGCATAAAG AAGAAGGAAC ATTCCACACA ATGTGGCATG TCACACGTGG TGCTGTTCTA ATGCATAAAG GGAAGAGAAT TGAACCATCA TGGGCGGACG TCAAGAAAGA CCTAATATCG TATGGAGGAG GGAAGAGAAT TGAACCATCA TGGGCGGACG TCAAGAAAGA CCTAATATCG TATGGAGGAG GCTGGAAGCT AGAAGGAGAA TGGAAGGAAG GAGAAGAAGT CCAGGTCCTG GCATTAGAGC GCTGGAAGCT AGAAGGAGAA TGGAAGGAAG GAGAAGAAGT CCAGGTCCTG GCATTAGAGC CTGGAAAGAA TCCAAGAGCC GTCCAAACAA AACCCGGTCT CTTCAAAACT AACACTGGAA CTGGAAAGAA TCCAAGAGCC GTCCAAACAA AACCCGGTCT TTTTAAAACT AACACTGGAA CCATAGGCGC CGTATCTCTG GACTTTTCTC CTGGAACGTC AGGATCTCCA ATCGTCGACA TCATAGGCGC CGTATCTCTG GACTTTTCTC CTGGAACGTC AGGATCTCCA ATTGTCGACA AAAAAGGAAA AGTTGTGGGC CTTTATGGCA ACGGCGTCGT CACAAGGAGT GGAACATATG AAAAAGGAAA AGTTGTGGGC CTTTATGGCA ACGGTGTCGT CACAAGGAGT GGAACATATG TGAGTGCCAT AGCCCAGACT GAAAAAAGCA TTGAAGATAA TCCAGAGATT GAAGATGACA TGAGTGCCAT AGCCCAGACT GAAAAAAGCA TTGAAGACAA CCCAGAGATT GAAGATGACA TCTTTCGAAA GAAAAGATTG ACCATCATGG ACCTCCACCC AGGGGCGGGA AAAACGAAGA TCTTTCGAAA GAAAAGATTG ACCATCATGG ACCTCCACCC AGGAGCAGGA AAAACAAAGA GATACCTTCC AGCAATAGTC AGAGAAGCCA TAAAACGAGG CTTGAGGACA CTAATCCTGG GATACCTTCC AGCAATAGTC AGAGAAGCCA TAAAACGAGG CTTGAGAACA CTAATCCTGG CCCCCACTAG AGTTGTGGCG GCTGAAATGG AAGAAGCTCT CAGAGGACTT CCAATAAGAT CCCCCACTAG AGTTGTGGCG GCTGAAATGG AAGAAGCTCT CAGAGGACTT CCAATAAGAT ACCAAACCCC CGCCATCAGA GCTGAGCACA CTGGGCGGGA GATTGTGGAT CTAATGTGTC ACCAAACCCC AGCTATCAGA GCTGAGCACA CTGGGCGGGA GATTGTGGAT CTAATGTGTC ACGCCACATT TACCATGAGG CTGCTATCCC CAATTAGAGT ACCAAATTAC AACCTGATCA ACGCCACATT TACCATGAGG CTACTATCAC CAATTAGAGT GCCAAATTAT AACCTGATTA TCATGGATGA AGCCCATTTC ACAGACCCAG CAAGCATAGC AGCTAGAGGA TACATTTCAA TCATGGATGA AGCCCATTTC ACAGACCCAG CAAGCATAGC AGCTAGAGGA TACATTTCAA CTCGAGTTGA GATGGGTGAA GCAGCTGGGA TTTTCATGAC AGCTACTCCT CCTGGAAGCA CTCGAGTAGA GATGGGTGAA GCAGCTGGGA TTTTCATGAC AGCTACCCCT CCTGGAAGCA GAGACCCATT TCCTCAGAGC AATGCACCAA TCATGGATGA AGAAAGGGAA ATCCCTGAGC GAGACCCATT TCCTCAGAGC AATGCACCAA TCATGGATGA AGAAAGGGAA ATCCCTGAGC GTTCGTGGAA TTCTGGACAT GAATGGGTTA CGGATTTTAA AGGGAAGACT GTTTGGTTTG GTTCGTGGAA CTCTGGACAT GAGTGGGTTA CGGATTTTAA AGGGAAGACT GTTTGGTTTG TTCCAAGTAT AAAAGCAGGA AATGATATAG CAGCTTGCCT GAGAAAGAAT GGAAAGAAAG TTCCAAGTAT AAAAGCAGGA AATGATATAG CAGCTTGCCT GAGAAAGAAT GGAAAGAAAG TGATACAACT CAGCAGGAAG ACCTTTGATT CTGAATATGT CAAGACTAGG ACCAATGATT TGATACAACT CAGCAGGAAG ACCTTTGATT CTGAATACAT CAAGACTAGG ACCAATGATT GGGACTTTGT GGTCACGACA GACATTTCAG AAATGGGCGC TAACTTCAAG GCTGAGAGGG GGGACTTTGT GGTCACGACA GACATTTCAG AAATGGGTGC TAACTTCAAG GCTGAGAGGG TTATAGACCC CAGGCGCTGC ATGAAACCAG TCATACTAAC AGACGGTGAA GAGCGGGTGA TTATAGACCC CAGACGCTGC ATGAAACCAG TCATACTAAC AGACGGTGAA GAGCGGGTGA TCCTGGCAGG ACCCATGCCA GTGACCCACT CTAGTGCAGC ACAAAGAAGA GGGAGAGTAG TTCTGGCAGG ACCCATGCCA GTGACCCACT CTAGTGCAGC ACAAAGAAGA GGGAGAATAG GAAGAAATCC AAAAAATGAA AATGACCAGT ACATATACAT GGGGGAACCT CTGGAAAATG GAAGAAATCC AAAAAATGAA AATGACCAGT ACATATACAT GGGGGAACCT CTGGAAAATG ATGAAGACTG TGCACACTGG AAAGAAGCTA AGATGCTTCT AGATAACATC AACACGCCCG ATGAAGACTG CGCACACTGG AAAGAAGCTA AGATGCTTCT AGATAACATC AACACGCCTG AAGGAATCAT TCCCAGTATG TTCGAACCAG AGCGTGAAAA GGTGGATGCC ATTGATGGTG AAGGAATCAT TCCCAGCATG TTCGAACCAG AGCGTGAAAA GGTCGACGCC ATTGATGGTG AATACCGCTT AAGAGGAGAA GCGAGGAAAA CTTTTGTGGA CCTAATGAGA AGAGGAGACC AATACCGCTT GAGAGGAGAA GCGAGGAAAA CATTTGTGGA CCTAATGAGA AGAGGAGACC TACCAGTCTG GCTAGCCTAC AGAGTGGCAG CTGAAGGTAT CAACTACGCA GACAGAAGAT TACCAGTCTG GCTAGCCTAC AGAGTGGCAG CTGAAGGTAT CAACTACGCA GACAGAAGAT GGTGCTTTGA TGGAGTCAAG AACAATCAAA TCTTGGAAGA AAATGTGGAA GTGGAAATTT GGTGCTTTGA TGGAGTCAAG AACAACCAAA TCTTGGAAGA AAATGTGGAA GTGGAAATTT GGACAAAAGA AGGAGAAAGG AAGAAATTAA AACCCAGATG GTTGGATGCT AGGATCTACT GGACAAAAGA AGGAGAAAGG AAGAAATTAA AACCCAGATG GTTAGATGCT AGGATCTACT CTGACCCACT GGCGCTCAAA GAATTCAAGG AATTCGCAGC TGGAAGAAAG TCCCTGACCC CTGACCCACT GGCGCTCAAA GAATTCAAGG AATTCGCAGC TGGAAGAAAA TCCCTGACCT TGAATCTAAT CACAGAGATG GGTAGGCTCC CAACCTTCAT GACCCAGAAA GCAAGGAACG TGAATCTAAT CACCGAGATG GGTAGGCTCC CAACCTTCAT GACCCAGAAA GCAAGGAATG CACTAGACAA CTTAGCAGTC CTGCATACGG CTGAAGCAGG CGGAAGGGCG TACAATCATG CATTGGACAA CTTAGCAGTC CTGCATACGG CTGAAGCAGG CGGAAGGGCG TACAACCATG CTCTTAGTGA ACTGCCGGAG ACCCTGGAGA CATTGCTTTT ACTGACACTC TTGGCCACAG CTCTTAGTGA ACTGCCGGAG ACTCTGGAGA CATTGCTTTT ACTGACACTT TTGGCCACAG TCACGGGCGG AATCTTCCTA TTCTTGATGA GCGGAAAAGG CATAGGGAAG ATGACCCTGG TCACGGGCGG AATCTTCCTG TTCTTGATGA GCGGAAAAGG TATAGGGAAG ATGACTCTGG GAATGTGCTG CATAATCACG GCCAGTGTTC TCCTATGGTA TGCACAAATA CAGCCACACT GAATGTGCTG CATAATCACG GCCAGTACTC TCCTATGGTA TGCACAAATA CAGCCACATT GGATAGCAGC TTCAATAATA CTGGAGTTTT TTCTCATAGT CTTGCTCATT CCAGAACCAG GGATAGCAGC TTCAATAATA CTGGAGTTTT TTCTCATAGT CTTGCTCATT CCAGAACCAG AAAAGCAGAG AACACCCCAA GATAACCAAT TAACTTATGT TGTCATAGCC ATCCTTACAG AAAAGCAGAG AACACCCCAA GACAACCAAT TAACTTATGT TGTCATAGCC ATCCTTACAG TGGTGGCCGC AACCATGGCA AACGAGATGG GTTTCCTGGA AAAAACAAAG AAAGACTTCG TGGTGGCCGC AACCATGGCA AACGAGATGG GTTTCCTGGA AAAAACAAAG AAAGATTTCG GATTGGGAAG CATTGCAACC CAGCAACCTG AGAGCAACAT CCTGGACATA GATCTACGTC GATTGGGAAG TATTACAACC CAGCAACCTG AGAGCAACAT CCTGGACATA GATCTACGTC CTGCATCAGC TTGGACTCTA TATGCTGTGG CAACAACTTT CATCACACCA ATGCTGAGAC CTGCATCAGC TTGGACTCTA TATGCCGTGG CAACAACTTT CATCACACCA ATGTTGAGAC ACAGCATTGA AAATTCCTCA GTGAATGTGT CTCTAACGGC CATTGCCAAC CAAGCCACAG ATAGCATTGA AAATTCCTCA GTGAATGTGT CTCTAACAGC CATTGCCAAC CAAGCCACAG TTTTAATGGG TCTTGGGAAA GGATGGCCAT TGTCAAAAAT GGACATCGGA GTTCCCCTTC TGTTAATGGG TCTTGGGAAA GGATGGCCAT TGTCGAAAAT GGACATCGGA GTTCCCCTTC TCGCTATCGG GTGCTATTCA CAAGTTAACC CCATAACTCT CACGGCAGCC CTTCTCTTAT TCGCTATCGG ATGCTATTCA CAAGTCAACC CCATAACTCT CACAGCAGCC CTTCTCTTAT TGGTAGCACA TTATGCCATC ATAGGGCCAG GACTCCAAGC GAAAGCAACT AGAGAAGCTC TGGTAGCACA TTATGCTATC ATAGGGCCAG GACTCCAAGC GAAAGCAACT AGAGAGGCTC AGAAAAGAGC AGCAGCGGGC ATCATGAAAA ACCCAACTGT GGATGGAATA ACAGTGATTG AGAAAAGAGC AGCAGCGGGC ATCATGAAAA ACCCAACTGT GGATGGAATA ACAGTGATTG ACCTAGATTC AATACCCTAT GATCCAAAGT TTGAAAAGCA GTTGGGACAA GTAATGCTCC ACCTAGATCC AATACCCTAT GATCCAAAGT TTGAAAAGCA GTTGGGACAA GTAATGCTCT TAGTCCTCTG CGTGACTCAA GTATTGATGA TGAGGACTAC ATGGGCTTTG TGTGAAGCTC TAGTCCTCTG CGTGACTCAA GTATTGATGA TGAGGACTAC ATGGGCTTTA TGTGAAGCTC TAACCTTAGC GACTGGGCCC ATCTCCACAC TGTGGGAAGG AAATCCAGGG AGATTTTGGA TAACCTTAGC GACCGGGCCC ATCTCTACAC TGTGGGAAGG AAATCCAGGG AGATTTTGGA ATACAACTAT TGCAGTATCA ATGGCTAACA TTTTTAGAGG GAGCTACCTG GCCGGAGCCG ATACAACTAT TGCAGTGTCA ATGGCTAACA TTTTTAGAGG GAGTTACCTG GCCGGAGCCG GACTTCTCTT TTCTATCATG AAGAATACGG CCAACACAAG AAGGGGAACT GGCAACACAG GACTTCTCTT TTCTATCATG AAGAACACGG CCAACACAAG AAGGGGAACT GGCAACACAG GAGAGACGCT TGGAGAAAAA TGGAAAAACC GATTGAATGC ATTGGGGAAG AGTGAATTTC GAGAGACGCT TGGAGAGAAA TGGAAAAACC GGTTGAATGC ATTGGGGAAG AGTGAATTCC AGATCTATAA GAAAAGTGGA ATCCAGGAGG TGGATAGAAC CTTAGCAAAA GAAGGCATCA AGATCTATAA GAAAAGTGGA ATCCAGGAAG TGGATAGAAC CTTAGCAAAA GAAGGCATCA AAAGAGGAGA AACGGACCAT CACGCTGTGT CGCGAGGCTC GGCGAAACTG AGATGGTTCG AGAGAGGAGA AACGGACCAT CACGCTGTGT CGCGAGGCTC AGCGAAACTG AGATGGTTCG TCGAGAGAAA CCTGGTCACA CCAGAAGGGA AAGTAATGGA CCTCGGTTGC GGCAGGGGGG TCGAGAGAAA CCTGGTCACA CCAGAAGGGA AAGTAGTGGA CCTTGGCTGC GGCAGGGGGG GCTGGTCATA CTATTGTGGG GGACTAAAGA ATGTAAAAGA AGTCAAAGGC CTAACAAAAG GCTGGTCATA CTATTGTGGG GGACTAAAGA ATGTAAAAGA AGTCAAAGGC CTAACAAAAG GAGGACCAGG ACACGAAGAA CCCATTCCCA TGTCAACATA TGGTTGGAAC CTGGTGCGTC GAGGACCAGG ACACGAAGAA CCCATTCCCA TGTCAACATA TGGTTGGAAT CTGGTGCGTC TTCAAAGTGG AGTTGATGTT TTTTTTACTC CGCCAGAAAA GTGTGACACA CTACTGTGTG TTCAAAGTGG AGTCCATGTC TTTTTTACTC CCCCCGAAAA GTGTGACCCA TTGCTGTGTG ACATAGGGGA GTCGTCACCA AACCCCACGG TTGAGGCAGG ACGAACACTC AGAGTTCTAA ACATAGGGGA GTCGTCACCA AACCCCACGG TTGAGGCAGG ACCAACACTC CGAGTTCTAA ACCTAGTGGA AAATTGGCTG AACAACAACA CCCAATTTTG CATCAAGGTT CTCAACCCAT ACTTAGTGGA AAACTGGCTG AACAACCACC CCCAATTTTG CATAAAGGTT CTCAACCCAT ATATGCCCTC AGTTATAGAA AAAATGGAAG CGCTGCAAAG GAAATACGGA GGAGCTTTGG ATATGCCTTC CGTTATAGAA AAAATGGAAG CGCTACCAAG GAAATATGGA GGAGCTTTGG TGAGGAATCC ACTCTCACGA AATTCCACAC ACGAGATGTA CTGGGTATCC AATGCTTCCG TGAGGAATCC ACTCTCACGA AATTCCCCAC ACGAGATGTA CTGGGTATCC AATGCTTCCG GGAACATAGT GTCATCAGTG AACATGATTT CAAGAATGTT GATTAACAGG TTCACAATGA GGAACATAGT GTCATCAGTG AACATGATTT CAAGAATGTT GATTAACAGA TTCACAATGA GACATAAGAA GGCCACATAC GAGCCAGATG TTGACCTCGG AAGCGGAACC CGCAACATCG GACACAAGAA GGCCACATAC GAGCCAGATG TTGATCTCGG AAGTGGAACC CGCAACATCG GAATTGAAAG TGAGATACCA AATTTGGACA TAATTGGGAA AAGAATAGAA AAAATAAAAC GAATTGAAAG TGAGACACCA AATTTAGACA TAATTGGGAA AAGAATAGAA AAAATAAAAC AAGAGCATGA AACATCATGG CACTATGACC AGGACCACCC ATACAAAACG TGGGCCTACC AAGAGCATGA AACATCATGG CACTATGACC AAGACCACCC ATACAAAACG TGGGCCTATC ATGGCAGCTA CGAAACAAAA CAGACTGGAT CGGCATCATC CATGGTGAAC GGAGTGGTTA ATGGCAGCTA CGAAACAAAA CAGACTGGAT CAGCATCATC CATGGTGAAC GGAGTGGTTA GGCTGCTAAC AAAACCTTGG GACGTCATCC CTATGGTGAC ACAGATGGCA ATGACAGACA GGCTGCTAAC AAAACCTTGG GACGTCATCC CTATGGTGAC ACAGATGGCA ATGACAGACA CGACTCCATT TGGACAACAG CGCGTTTTCA AAGAGAAAGT GGACACGAGA ACCCAAGAAC CGACTCCATT TGGACAACAG CGCGTTTTCA AAGAGAAAGT GGACACGAGA ACCCAAGAAC CGAAAGAAGG CACGAAAAAA CTAATGAAAA TCACGGCAGA ATGGCTCTGG AAAGAATTAG CGAAAGAAGG CACGAAAAAA CTAATGAAAA TCACGGCAGA ATGGCTCTGG AAAGAACTAG GAAAGAAAAA GACACCTAGG ATGTGCACCA GAGAAGAATT CACAAGAAAG GTGAGAAGCA GAAAGAAAAA GACACCTAGG ATGTGCACCA GAGAAGAATT CACAAGAAAG GTGAGAAGCA ATGCAGCCTT AGGCGCCATA TTCACTGATG AGAACAAGTG GAAGTCGGCA CGTGAGGCTG ATGCAGCCTT AGGTGCCATA TTCACTGATG AGAACAAGTG GAAGTCGGCA CGTGAGGCTG TTGAAGATAG TGGATTTTGG GAACTGGTTG ACAAGGAAAG GAATCTTCAT CTTGAAGGAA TTGAAGACAG TGGATTTTGG GAATTGGTTG ACAAGGAAAG GAATCTCCAT CTTGAAGGAA AGTGTGAGAC ATGTGTGTAT AACATGATGG GAAAGAGAGA GAAGAAGCTA GGGGAGTTCG AGTGTGAGAC ATGTGTGTAC AACATGATGG GAAAGAGAGA GAAGAAGCTA GGGGAGTTCG GCAAAGCAAA AGGCAGCAGA GCCATATGGT ACATGTGGCT TGGAGCACGC TTCTTAGAGT GCAAAGCAAA AGGCAGCAGA GCCATATGGT ACATGTGGCT TGGAGCACGC TTCTTAGAGT TTGAAGCCCT AGGATTCTTG AATGAAGATC ACTGGTTTTC CAGAGAGAAC TCCCTGAGTG TTGAAGCCCT AGGATTCTTG AATGAAGATC ACTGGTTTTC CAGAGAGAAC TCCCTGAGTG GAGTGGAAGG AGAAGGGCTG CACAAACTAG GCTACATTTT AAGAGACGTG AGCAAGAAAG GAGTGGAAGG AGAAGGGCTG CACAAACTAG GCTACATTTT AAGAGACGTG AGTAAGAAAG AAGGAGGAGC AATGTACGCC GATGACACMG CAGSATGGGA CACAAGAATC ACACTAGAGG AAGGAGGAGC AATGTACGCC GATGACACCG CAGGATGGGA CACAAGAATC ACACTAGAGG ACTTAAAAAA TGAAGAAATG GTGACAAACC ACATGGAAGG AGAACACAAG AAACTTGCTG ACTTGAAAAA TGAAGAAATG GTGACAAACC ACATGGAAGG AGAACACAAG AAACTTGCCG AAGCCATTTT CAAATTAACG TACCAAAACA AGGTGGTGCG TGTGCAAAGA CCAACACCAA AAGCCATTTT CAGATTAACG TACCAAAACA AAGTGGTGCG TGTGCAAAGA CCGACACCAA GAGGCACAGT AATGGACATT ATATCGAGAA GAGACCAAAG AGGTAGCGGA CAAGTTGTCA GAGGCACAGT AATGGACATT ATATCGAGAA GAGACCAAAG AGGTAGTGGA CAGGTTGTCA CCTACGGCCT CAATACTTTC ACCAACATGG AAGCCCAACT GATCAGACAG ATGGAGGGAG CCTACGGCCT CAATACTTTC ACCAACATGG AAGCCCAACT GATCAGACAG ATGGAGGGAG AAGGAGTCTT CAAAAGCATC CAGCACCTGA CAGTCACAGA AGAAATTGCA GTGAAAAACT AAGGAGTCTT CAAGAGCATC CAGCACCTGA CAGTCACAGA AGAAATTGCA GTGAAAAACT GGTTAGCAAG AGTGGGGCGT GAGAGGTTAT CAAGAATGGC TATCAGTGGA GATGATTGTG GGTTAGCAAG AGTGGGGCGT GAGAGGTTAT CAAGAATGGC CATCAGTGGA GATGATTGTG TTGTGAAACC CTTAGATGAT AGGTTTGCAA GCGCTCTAAC AGCTCTAAAT GACATGGGAA TTGTGAAACC CTTAGATGAC AGGTTTGCAA GCGCTCTAAC AGCTCTAAAT GACATGGGAA AAGTTAGGAA AGACATACAA CAATGGGAAC CTTCAAGAGG ATGGAACGAT TGGACACAAG AGGTTAGGAA AGACATACAA CAATGGGAAC CTTCAAGAGG ATGGAACGAT TGGACACAAG TGCCCTTTTG TTCACACCAT TTCCATGAGW TAATCATGAA GGACGGTCGC GTACTCGTAG TGCCCTTTTG TTCACACCAT TTCCATGAGT TAATCATGAA GGACGGTCGT GTACTTGTAG TTCCATGCAG AAACCAAGAT GAACTGATTG GTAGGGCCCG AATTTCCCAG GGAGCCGGGT TTCCATGTAG AAACCAAGAT GAACTGATTG GTAGGGCCCG AATTTCCCAG GGAGCCGGGT GGTCTTTGCG GGAAACAGCC TGTTTGGGGA AGTCTTACGC CCAAATGTGG AGCCTGATGT GGTCCCTGCG GGAAACAGCC TGTTTGGGGA AGTCTTACGC CCAAATGTGG AGCCTGATGT ACTTCCACAG ACGTGACCTT AGGCTGGCGG CAAATGCCAT TTGCTCGGCA GTCCCATCAC ACTTCCACAG ACGTGACCTT AGGCTGGCGG CAAATGCCAT TTGCTCGGCA GTCCCATCAC ATTGGGTTCC AACAAGTCGA ACAACTTGGT CCATACATGC CACACATGAG TGGATGACAA ATTGGGTTCC AACAAGTCGA ACAACCTGGT CCATACACGC CACACATGAG TGGATGACAA CAGAAGATAT GCTGACAGTC TGGAACAGGG TGTGGATTCA AGAAAACCCA TGGATGGAAG CAGAAGACAT GCTGACAGTC TGGAACAGGG TGTGGATTCA AGAAAACCCA TGGATGGAAG ACAAAACTCC AGTAGAATCA TGGGAGGAAA TCCCATATTT GGGGAAAAGA GAAGACCAAT ACAAAACTCC AGTAGAATCA TGGGAGGAAA TCCCATATTT GGGGAAAAGA GAAGACCAAT GGTGCGGCTC ATTGATCGGG CTAACAAGCA GGGCCACTTG GGCAAAGAAC ATCCAAACAG GGTGCGGCTC ATTGATTGGG CTAACAAGCA GGGCCACCTG GGCAAAGAAC ATCCAAACAG CAATAAATCA AGTTAGATCC CTAATAGGCA ATGAGGAATA CACGGACTAC ATGCCATCCA CAATAAATCA AGTTAGATCC CTAATAGGCA ATGAGGAATA CACAGACTAC ATGCCATCCA TGAAAAGGTT CAGAAGAGAA GAGGAAGAGG CAGGAGTCTT GTGGTAG TGAAAAGATT CAGAAGAGAA GAGGAAGAGG CAGGAGTCTT GTGGTAG 2015-10-07 07:52:35.921 UTC reps00 1000 2015-10-07 10:39:11.841 UTC jobId0jobStatus0fullPath_output0report0outfile0outfile_url0run_fseqboot_localparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_molecular_sequence.fseqboot?wsdl run net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_fseqboot_local_inputsequence0reps0seqtype0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity sequence 0 'text/xml' false categories_direct_data 0 'text/plain' false categories_url 0 'text/plain' false weights_direct_data 0 'text/plain' false weights_url 0 'text/plain' false test 0 'text/plain' false regular 0 'text/plain' false fracsample 0 'text/plain' false rewriteformat 0 'text/plain' false seqtype 0 'text/plain' false blocksize 0 'text/plain' false reps 0 'text/plain' false justweights 0 'text/plain' false seed 0 'text/plain' false printdata 0 'text/plain' false dotdiff 0 'text/plain' false progress 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="run" name="parameters" qname="{http://soaplab.org/fseqboot}run"><s:elements><s:complextype optional="false" unbounded="false" typename="sequenceInput" name="sequence" qname="appInputs&gt;sequence"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="direct_data" qname="sequenceInput&gt;direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="usa" qname="sequenceInput&gt;usa" /><s:basetype optional="true" unbounded="false" typename="string" name="sformat" qname="sequenceInput&gt;sformat" /><s:basetype optional="true" unbounded="false" typename="int" name="sbegin" qname="sequenceInput&gt;sbegin"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Start of sequence(s) to be used </xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="send" qname="sequenceInput&gt;send"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>End of sequence(s) to be used </xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="sprotein" qname="sequenceInput&gt;sprotein"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence is protein</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="snucleotide" qname="sequenceInput&gt;snucleotide"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence is nucleotide</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="sreverse" qname="sequenceInput&gt;sreverse"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Reverse (if DNA)</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="slower" qname="sequenceInput&gt;slower"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Make lower case</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="supper" qname="sequenceInput&gt;supper"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Make upper case</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="string" name="categories_direct_data" qname="appInputs&gt;categories_direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="categories_url" qname="appInputs&gt;categories_url" /><s:basetype optional="true" unbounded="false" typename="string" name="weights_direct_data" qname="appInputs&gt;weights_direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="weights_url" qname="appInputs&gt;weights_url" /><s:basetype optional="true" unbounded="false" typename="string" name="test" qname="appInputs&gt;test" /><s:basetype optional="true" unbounded="false" typename="boolean" name="regular" qname="appInputs&gt;regular" /><s:basetype optional="true" unbounded="false" typename="float" name="fracsample" qname="appInputs&gt;fracsample" /><s:basetype optional="true" unbounded="false" typename="string" name="rewriteformat" qname="appInputs&gt;rewriteformat" /><s:basetype optional="true" unbounded="false" typename="string" name="seqtype" qname="appInputs&gt;seqtype" /><s:basetype optional="true" unbounded="false" typename="long" name="blocksize" qname="appInputs&gt;blocksize" /><s:basetype optional="true" unbounded="false" typename="long" name="reps" qname="appInputs&gt;reps" /><s:basetype optional="true" unbounded="false" typename="string" name="justweights" qname="appInputs&gt;justweights" /><s:basetype optional="true" unbounded="false" typename="long" name="seed" qname="appInputs&gt;seed" /><s:basetype optional="true" unbounded="false" typename="boolean" name="printdata" qname="appInputs&gt;printdata" /><s:basetype optional="true" unbounded="false" typename="boolean" name="dotdiff" qname="appInputs&gt;dotdiff" /><s:basetype optional="true" unbounded="false" typename="boolean" name="progress" qname="appInputs&gt;progress" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokelocal_sequencedirect_data0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity direct_data 0 'text/plain' false usa 0 'text/plain' false sformat 0 'text/plain' false sbegin 0 'text/plain' false send 0 'text/plain' false sprotein 0 'text/plain' false snucleotide 0 'text/plain' false sreverse 0 'text/plain' false slower 0 'text/plain' false supper 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="sequenceInput" name="sequence" qname="appInputs&gt;sequence"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="direct_data" qname="sequenceInput&gt;direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="usa" qname="sequenceInput&gt;usa" /><s:basetype optional="true" unbounded="false" typename="string" name="sformat" qname="sequenceInput&gt;sformat" /><s:basetype optional="true" unbounded="false" typename="int" name="sbegin" qname="sequenceInput&gt;sbegin"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Start of sequence(s) to be used </xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="send" qname="sequenceInput&gt;send"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>End of sequence(s) to be used </xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="sprotein" qname="sequenceInput&gt;sprotein"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence is protein</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="snucleotide" qname="sequenceInput&gt;snucleotide"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence is nucleotide</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="sreverse" qname="sequenceInput&gt;sreverse"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Reverse (if DNA)</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="slower" qname="sequenceInput&gt;slower"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Make lower case</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="supper" qname="sequenceInput&gt;supper"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Make upper case</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_fseqboot_local_outputinput0jobId00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobId 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="runResponse" name="parameters" qname="{http://soaplab.org/typedws}runResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="runResponse&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGETSTATUSjobId0jobStatus00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.5</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>jobStatus</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + jobStatus.equals("RUNNING"); if ("true".matches(loop)) { Thread.sleep(2000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeseqtype_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity d net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGETFILEPATHJobId0fullPath_output00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResultsparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_molecular_sequence.fseqboot?wsdl getResults net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResults" name="parameters" qname="{http://soaplab.org/typedws}getResults"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_outputinput0report00outfile00outfile_url00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false report 0 'text/plain' 0 detailed_status 0 'text/plain' 0 outfile 0 'text/plain' 0 outfile_url 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResultsResponse" name="parameters" qname="{http://soaplab.org/fseqboot}getResultsResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="report" qname="appResults&gt;report" /><s:basetype optional="true" unbounded="false" typename="long" name="detailed_status" qname="appResults&gt;detailed_status" /><s:basetype optional="true" unbounded="false" typename="string" name="outfile" qname="appResults&gt;outfile" /><s:basetype optional="true" unbounded="false" typename="string" name="outfile_url" qname="appResults&gt;outfile_url" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_fseqboot_localparametersrun_fseqboot_local_inputoutputrun_fseqboot_local_inputsequencelocal_sequenceoutputrun_fseqboot_local_inputrepsrepsrun_fseqboot_local_inputseqtypeseqtype_valuevaluelocal_sequencedirect_datadirect_datarun_fseqboot_local_outputinputrun_fseqboot_localparametersGETSTATUSjobIdrun_fseqboot_local_outputjobIdGETFILEPATHJobIdrun_fseqboot_local_outputjobIdgetResultsparametersgetResults_inputoutputgetResults_inputjobIdgetResults_jobIdoutputgetResults_jobIdjobIdrun_fseqboot_local_outputjobIdgetResults_outputinputgetResultsparametersjobIdrun_fseqboot_local_outputjobIdjobStatusGETSTATUSjobStatusfullPath_outputGETFILEPATHfullPath_outputreportgetResults_outputreportoutfilegetResults_outputoutfileoutfile_urlgetResults_outputoutfile_url 3b656d3b-5e5b-406d-b997-a50c5dd29cc0 2015-10-15 09:03:34.79 UTC b76ee8dc-a343-4dba-83b1-ce09aba9947b 2015-10-15 09:16:53.457 UTC f3df8520-beb9-42d1-980d-992f3c72de42 2015-10-17 09:41:22.189 UTC 773bd673-1a4c-45ca-9480-a6298e1547f2 2015-10-17 08:43:53.691 UTC ce4720b6-78b7-4537-bd44-3543078b8257 2015-10-09 10:39:57.901 UTC b19a4d91-f507-437d-ada9-d6b3ef19c633 2015-10-11 14:31:18.980 UTC 8fc3f8a5-cbfd-4a93-afdb-3ab1f4eaf25c 2015-10-17 08:12:58.143 UTC 1988771b-4e07-4ca2-b989-562e10b3d5ee 2015-10-07 07:52:43.438 UTC 2dcdde8f-6863-462b-8715-43e02055102a 2015-10-07 10:39:14.22 UTC f0b8eed7-0754-46a6-8e59-7d73265d011f 2015-10-16 15:42:24.149 UTC f7383e26-510e-4a2a-9f47-3562b6d347e3 2015-10-09 11:14:58.548 UTC 4c7d2d37-9e30-4dda-94bf-977ae4efabbd 2015-10-07 10:38:57.377 UTC 8ec8e453-3b64-4058-a37e-9db14d0772c4 2015-10-09 10:45:35.758 UTC 1e784172-90e4-442b-a7fc-1e5b7dee82d4 2015-10-09 11:13:33.112 UTC c3016b39-0b06-4423-ae58-a4e6b791a444 2015-10-17 05:15:47.682 UTC 61f5aa8d-9784-4530-a173-a52158a3e774 2015-10-09 10:17:06.935 UTC 9996abf0-3826-463e-8f0d-ae3faf130d6e 2015-10-07 10:39:32.628 UTC 4feefe9e-ba9c-4b48-b394-a92faa1fb748 2015-10-17 09:12:27.392 UTC e4581872-e6a6-49c2-9b44-ce906d8d5e16 2015-10-07 08:00:33.355 UTC 943e9ceb-a017-4b24-a151-605c2533c676 2015-10-09 10:44:34.814 UTC 9509dd77-85b1-4f4b-bf12-74a22ba40683 2015-10-11 15:13:54.165 UTC 13966800-8d5d-4c82-a6b7-0c43274d4870 2015-10-15 08:51:56.180 UTC 7d667b9e-fcda-40e0-b4ac-731238b37956 2015-10-17 09:41:38.491 UTC Workflow291outgrno00 13 2015-10-16 19:33:17.432 UTC fseqbootfile00 /home/kasikrit/Taverna/NCBI_Dengue/DNA/Reps10/output-nogap.fseqboot 2015-10-16 20:10:56.769 UTC jobId0jobStatus0outfile0outtreefile0report0fullPath_treefile0runparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_molecular_sequence.fdnaml?wsdl run net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_inputauto0outgrno0fseqbootfile0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity fseqbootfile 0 'text/plain' false intreefile_direct_data 0 'text/plain' false intreefile_url 0 'text/plain' false outgrno 0 'text/plain' false ncategories 0 'text/plain' false rate 0 'text/plain' false categories_direct_data 0 'text/plain' false categories_url 0 'text/plain' false weights_direct_data 0 'text/plain' false weights_url 0 'text/plain' false lengths 0 'text/plain' false ttratio 0 'text/plain' false freqsfrom 0 'text/plain' false basefreq 0 'text/plain' false gamma 0 'text/plain' false gammacoefficient 0 'text/plain' false ngammacat 0 'text/plain' false invarcoefficient 0 'text/plain' false ninvarcat 0 'text/plain' false invarfrac 0 'text/plain' false nhmmcategories 0 'text/plain' false hmmrates 0 'text/plain' false hmmprobabilities 0 'text/plain' false adjsite 0 'text/plain' false lambda 0 'text/plain' false njumble 0 'text/plain' false seed 0 'text/plain' false global 0 'text/plain' false rough 0 'text/plain' false trout 0 'text/plain' false printdata 0 'text/plain' false auto 0 'text/plain' false progress 0 'text/plain' false treeprint 0 'text/plain' false hypstate 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="run" name="parameters" qname="{http://soaplab.org/fdnaml}run"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="fseqbootfile" qname="appInputs&gt;fseqbootfile"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>File containing one or more sequence alignments</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="intreefile_direct_data" qname="appInputs&gt;intreefile_direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="intreefile_url" qname="appInputs&gt;intreefile_url" /><s:basetype optional="true" unbounded="false" typename="long" name="outgrno" qname="appInputs&gt;outgrno" /><s:basetype optional="true" unbounded="false" typename="long" name="ncategories" qname="appInputs&gt;ncategories" /><s:basetype optional="true" unbounded="false" typename="string" name="rate" qname="appInputs&gt;rate" /><s:basetype optional="true" unbounded="false" typename="string" name="categories_direct_data" qname="appInputs&gt;categories_direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="categories_url" qname="appInputs&gt;categories_url" /><s:basetype optional="true" unbounded="false" typename="string" name="weights_direct_data" qname="appInputs&gt;weights_direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="weights_url" qname="appInputs&gt;weights_url" /><s:basetype optional="true" unbounded="false" typename="boolean" name="lengths" qname="appInputs&gt;lengths" /><s:basetype optional="true" unbounded="false" typename="float" name="ttratio" qname="appInputs&gt;ttratio" /><s:basetype optional="true" unbounded="false" typename="boolean" name="freqsfrom" qname="appInputs&gt;freqsfrom" /><s:basetype optional="true" unbounded="false" typename="string" name="basefreq" qname="appInputs&gt;basefreq" /><s:basetype optional="true" unbounded="false" typename="string" name="gamma" qname="appInputs&gt;gamma" /><s:basetype optional="true" unbounded="false" typename="float" name="gammacoefficient" qname="appInputs&gt;gammacoefficient" /><s:basetype optional="true" unbounded="false" typename="long" name="ngammacat" qname="appInputs&gt;ngammacat" /><s:basetype optional="true" unbounded="false" typename="float" name="invarcoefficient" qname="appInputs&gt;invarcoefficient" /><s:basetype optional="true" unbounded="false" typename="long" name="ninvarcat" qname="appInputs&gt;ninvarcat" /><s:basetype optional="true" unbounded="false" typename="float" name="invarfrac" qname="appInputs&gt;invarfrac" /><s:basetype optional="true" unbounded="false" typename="long" name="nhmmcategories" qname="appInputs&gt;nhmmcategories" /><s:basetype optional="true" unbounded="false" typename="string" name="hmmrates" qname="appInputs&gt;hmmrates" /><s:basetype optional="true" unbounded="false" typename="string" name="hmmprobabilities" qname="appInputs&gt;hmmprobabilities" /><s:basetype optional="true" unbounded="false" typename="boolean" name="adjsite" qname="appInputs&gt;adjsite" /><s:basetype optional="true" unbounded="false" typename="float" name="lambda" qname="appInputs&gt;lambda" /><s:basetype optional="true" unbounded="false" typename="long" name="njumble" qname="appInputs&gt;njumble" /><s:basetype optional="true" unbounded="false" typename="long" name="seed" qname="appInputs&gt;seed" /><s:basetype optional="true" unbounded="false" typename="boolean" name="global" qname="appInputs&gt;global" /><s:basetype optional="true" unbounded="false" typename="boolean" name="rough" qname="appInputs&gt;rough" /><s:basetype optional="true" unbounded="false" typename="boolean" name="trout" qname="appInputs&gt;trout" /><s:basetype optional="true" unbounded="false" typename="boolean" name="printdata" qname="appInputs&gt;printdata" /><s:basetype optional="true" unbounded="false" typename="boolean" name="auto" qname="appInputs&gt;auto" /><s:basetype optional="true" unbounded="false" typename="boolean" name="progress" qname="appInputs&gt;progress" /><s:basetype optional="true" unbounded="false" typename="boolean" name="treeprint" qname="appInputs&gt;treeprint" /><s:basetype optional="true" unbounded="false" typename="boolean" name="hypstate" qname="appInputs&gt;hypstate" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_outputinput0jobId00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobId 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="runResponse" name="parameters" qname="{http://soaplab.org/typedws}runResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="runResponse&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeauto_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGETSTATUSjobId0jobStatus00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.5</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>jobStatus</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + jobStatus.equals("RUNNING"); if ("true".matches(loop)) { Thread.sleep(2000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResultsparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_molecular_sequence.fdnaml?wsdl getResults net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResults" name="parameters" qname="{http://soaplab.org/typedws}getResults"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_outputinput0outfile00outtreefile00report00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false report 0 'text/plain' 0 detailed_status 0 'text/plain' 0 outfile 0 'text/plain' 0 outfile_url 0 'text/plain' 0 outtreefile 0 'text/plain' 0 outtreefile_url 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResultsResponse" name="parameters" qname="{http://soaplab.org/fdnaml}getResultsResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="report" qname="appResults&gt;report" /><s:basetype optional="true" unbounded="false" typename="long" name="detailed_status" qname="appResults&gt;detailed_status" /><s:basetype optional="true" unbounded="false" typename="string" name="outfile" qname="appResults&gt;outfile" /><s:basetype optional="true" unbounded="false" typename="string" name="outfile_url" qname="appResults&gt;outfile_url" /><s:basetype optional="true" unbounded="false" typename="string" name="outtreefile" qname="appResults&gt;outtreefile" /><s:basetype optional="true" unbounded="false" typename="string" name="outtreefile_url" qname="appResults&gt;outtreefile_url" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclearparameters0net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_molecular_sequence.fdnaml?wsdl clear net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclear_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="clear" name="parameters" qname="{http://soaplab.org/typedws}clear"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="clearRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclear_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="clearRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGETFILEPATHJobId0fullPath_treefile00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerunparametersrun_inputoutputrun_inputautoauto_valuevaluerun_inputoutgrnooutgrnorun_inputfseqbootfilefseqbootfilerun_outputinputrunparametersGETSTATUSjobIdrun_outputjobIdgetResultsparametersgetResults_inputoutputgetResults_inputjobIdgetResults_jobIdoutputgetResults_jobIdjobIdrun_outputjobIdgetResults_outputinputgetResultsparametersclearparametersclear_inputoutputclear_inputjobIdclear_jobIdoutputclear_jobIdjobIdrun_outputjobIdGETFILEPATHJobIdrun_outputjobIdjobIdrun_outputjobIdjobStatusGETSTATUSjobStatusoutfilegetResults_outputoutfileouttreefilegetResults_outputouttreefilereportgetResults_outputreportfullPath_treefileGETFILEPATHfullPath_treefile 4ba194a6-a756-4ad4-8daa-d72ec4835759 2015-10-16 20:10:26.281 UTC 02ea923e-9a55-4bef-a20c-370f0b35edd4 2015-10-16 20:11:30.279 UTC 2ce06426-eda0-445d-8da1-db98a110b99a 2015-10-16 19:51:12.259 UTC 1ec000fd-3aba-427b-9874-598b561dacf1 2015-10-16 19:46:52.141 UTC ab409809-726a-4fea-95b6-28db05ed6c8a 2015-10-16 20:10:57.778 UTC fc36cdd7-cd26-43f2-bf4b-32cf2fc7d5e6 2015-10-16 19:43:50.719 UTC dfe095fa-7d88-4f1f-a03c-4cb34eb9da3a 2015-10-16 19:37:56.164 UTC Workflow5fseqbootfile00 /home/kasikrit/Dropbox/PhD/Taverna/output-nogap.fseqboot 2016-03-25 20:48:09.387 UTC outgrno00 13 2015-10-15 11:08:20.316 UTC jobId0jobStatus0fullPath_outfile0fullPath_treefile0outfile0outtreefile0report0run_outputinput0jobId00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobId 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="runResponse" name="parameters" qname="{http://soaplab.org/typedws}runResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="runResponse&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatusjobId0jobStatus00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.5</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>jobStatus</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + jobStatus.equals("RUNNING"); if ("true".matches(loop)) { Thread.sleep(2000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeauto_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerunparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_molecular_sequence.fdnapars?wsdl run net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_inputauto0outgrno0fseqbootfile0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity fseqbootfile 0 'text/plain' false intreefile_direct_data 0 'text/plain' false intreefile_url 0 'text/plain' false outgrno 0 'text/plain' false weights_direct_data 0 'text/plain' false weights_url 0 'text/plain' false maxtrees 0 'text/plain' false thorough 0 'text/plain' false rearrange 0 'text/plain' false transversion 0 'text/plain' false auto 0 'text/plain' false njumble 0 'text/plain' false seed 0 'text/plain' false thresh 0 'text/plain' false threshold 0 'text/plain' false trout 0 'text/plain' false printdata 0 'text/plain' false progress 0 'text/plain' false stepbox 0 'text/plain' false ancseq 0 'text/plain' false treeprint 0 'text/plain' false dotdiff 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="run" name="parameters" qname="{http://soaplab.org/fdnapars}run"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="fseqbootfile" qname="appInputs&gt;fseqbootfile"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>File containing one or more sequence alignments</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="intreefile_direct_data" qname="appInputs&gt;intreefile_direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="intreefile_url" qname="appInputs&gt;intreefile_url" /><s:basetype optional="true" unbounded="false" typename="long" name="outgrno" qname="appInputs&gt;outgrno" /><s:basetype optional="true" unbounded="false" typename="string" name="weights_direct_data" qname="appInputs&gt;weights_direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="weights_url" qname="appInputs&gt;weights_url" /><s:basetype optional="true" unbounded="false" typename="long" name="maxtrees" qname="appInputs&gt;maxtrees" /><s:basetype optional="true" unbounded="false" typename="boolean" name="thorough" qname="appInputs&gt;thorough" /><s:basetype optional="true" unbounded="false" typename="boolean" name="rearrange" qname="appInputs&gt;rearrange" /><s:basetype optional="true" unbounded="false" typename="boolean" name="transversion" qname="appInputs&gt;transversion" /><s:basetype optional="true" unbounded="false" typename="boolean" name="auto" qname="appInputs&gt;auto" /><s:basetype optional="true" unbounded="false" typename="long" name="njumble" qname="appInputs&gt;njumble" /><s:basetype optional="true" unbounded="false" typename="long" name="seed" qname="appInputs&gt;seed" /><s:basetype optional="true" unbounded="false" typename="boolean" name="thresh" qname="appInputs&gt;thresh" /><s:basetype optional="true" unbounded="false" typename="float" name="threshold" qname="appInputs&gt;threshold" /><s:basetype optional="true" unbounded="false" typename="boolean" name="trout" qname="appInputs&gt;trout" /><s:basetype optional="true" unbounded="false" typename="boolean" name="printdata" qname="appInputs&gt;printdata" /><s:basetype optional="true" unbounded="false" typename="boolean" name="progress" qname="appInputs&gt;progress" /><s:basetype optional="true" unbounded="false" typename="boolean" name="stepbox" qname="appInputs&gt;stepbox" /><s:basetype optional="true" unbounded="false" typename="boolean" name="ancseq" qname="appInputs&gt;ancseq" /><s:basetype optional="true" unbounded="false" typename="boolean" name="treeprint" qname="appInputs&gt;treeprint" /><s:basetype optional="true" unbounded="false" typename="boolean" name="dotdiff" qname="appInputs&gt;dotdiff" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGETFILEPATHJobId0fullPath_outfile00fullPath_treefile00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResultsparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_molecular_sequence.fdnapars?wsdl getResults net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclearparameters0net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_molecular_sequence.fdnapars?wsdl clear net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResults" name="parameters" qname="{http://soaplab.org/typedws}getResults"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_outputinput0outfile00outtreefile00report00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false report 0 'text/plain' 0 detailed_status 0 'text/plain' 0 outfile 0 'text/plain' 0 outfile_url 0 'text/plain' 0 outtreefile 0 'text/plain' 0 outtreefile_url 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResultsResponse" name="parameters" qname="{http://soaplab.org/fdnapars}getResultsResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="report" qname="appResults&gt;report" /><s:basetype optional="true" unbounded="false" typename="long" name="detailed_status" qname="appResults&gt;detailed_status" /><s:basetype optional="true" unbounded="false" typename="string" name="outfile" qname="appResults&gt;outfile" /><s:basetype optional="true" unbounded="false" typename="string" name="outfile_url" qname="appResults&gt;outfile_url" /><s:basetype optional="true" unbounded="false" typename="string" name="outtreefile" qname="appResults&gt;outtreefile" /><s:basetype optional="true" unbounded="false" typename="string" name="outtreefile_url" qname="appResults&gt;outtreefile_url" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclear_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="clear" name="parameters" qname="{http://soaplab.org/typedws}clear"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="clearRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclear_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="clearRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_outputinputrunparametersgetStatusjobIdrun_outputjobIdrunparametersrun_inputoutputrun_inputautoauto_valuevaluerun_inputoutgrnooutgrnorun_inputfseqbootfilefseqbootfileGETFILEPATHJobIdrun_outputjobIdgetResultsparametersgetResults_inputoutputclearparametersclear_inputoutputgetResults_inputjobIdgetResults_jobIdoutputgetResults_jobIdjobIdrun_outputjobIdgetResults_outputinputgetResultsparametersclear_inputjobIdclear_jobIdoutputclear_jobIdjobIdrun_outputjobIdjobIdrun_outputjobIdjobStatusgetStatusjobStatusfullPath_outfileGETFILEPATHfullPath_outfilefullPath_treefileGETFILEPATHfullPath_treefileoutfilegetResults_outputoutfileouttreefilegetResults_outputouttreefilereportgetResults_outputreport 7e806ebe-8d57-4c88-8a7b-85760fa681a1 2015-10-16 10:34:59.10 UTC 49eb2a75-8e71-4986-85fb-6174aaffef5a 2015-10-15 05:01:36.135 UTC d033c17b-ccd0-4835-af4e-1be654b73f74 2015-10-15 10:42:36.792 UTC c9cf7e12-3b4e-4e79-bf23-0c7322a4bec6 2015-10-16 14:42:47.840 UTC 41ea1c26-5877-4a44-aaab-2df3c6347569 2015-10-15 06:10:42.74 UTC 1469e557-bb97-4065-9f09-a9887c0b78a6 2015-10-15 05:07:08.833 UTC 52c71726-5d5a-4e75-9f69-eed3044646a8 2015-10-17 05:53:38.183 UTC 5c0d86aa-b912-4fb2-a79c-1a5082199361 2015-10-10 18:09:04.783 UTC ec883c40-86bf-40ce-837e-aa06781eb69e 2015-10-15 10:47:22.273 UTC 9a68951c-d6bb-43cf-80e1-92c21c22cb71 2015-10-16 14:41:40.874 UTC f511fb99-8ed8-4e09-b4d4-4f8085519c53 2015-10-17 05:59:48.638 UTC 33f4fd3e-968e-4a45-922a-3179058170ee 2015-10-16 14:59:06.695 UTC f138b2c9-5cf2-48aa-82b0-3cab3b9ae33e 2015-10-16 15:06:24.572 UTC b07cb4bd-03d4-4189-b15f-514cb992ffbe 2015-10-15 05:02:51.639 UTC 67270ad9-3414-48a0-b36f-a23bf7e656fb 2015-10-15 11:09:52.90 UTC a3b09e81-29f6-499c-9a98-c1a92f1b9770 2015-10-10 17:28:53.284 UTC 5ea29f43-c5ed-4b50-9d05-ad16e6585fad 2015-10-15 07:35:32.612 UTC b2439367-b24e-42e7-8151-a7272af59738 2015-10-16 10:12:54.147 UTC 63d84430-cfce-428c-a41a-c0c800caee16 2016-03-25 20:48:11.596 UTC 31faacd1-5fea-4c63-9336-d2bc6c00c610 2015-10-15 07:32:56.569 UTC d3add69b-44e0-47b7-ae66-c2ee96b8095d 2015-10-16 15:05:10.454 UTC 59df0ad4-5a52-47ca-8a5e-9b55b52f629b 2015-10-17 06:02:49.682 UTC 0f422a53-5c53-4d3b-827b-48957f71fbaf 2015-10-15 05:11:38.743 UTC 9aed2983-0d5d-4800-a468-0fbbaaba61c2 2015-10-10 18:20:49.714 UTC Workflow13MSA_Results_Phylip00 13 10221 KF744397 1tgaataaccaacgaaaaaaggcgagaaaaacgcctttcaatatgctgaa KF744398 atgaataaccaacgaaaaaaggcgagaaaaacgcctttcaatatgctgaa KF744399 atgaataaccaacgaaaaaaggcgagaaaaacgcctttcaatatgctgaa KF744400 atgaataaccaacgaaaaaaggcgagaaaaacgcctttcaatatgctgaa KF744401 ATGAATAACCAACGGAAAAAGGCGAGAAATACGCCTTTCAATATGCTGAA KF744402 atgaataaccaacgaaaaaaggcgagaaaaacgcctttcaatatgctgaa KF744403 atgaataaccaacgaaaaaaggcgagaaaaacgcctttcaatatgctgaa KF744404 atgaataaccaacgaaaaaaggcgagaaaaacgcctttcaatatgctgaa KF744405 atgaataaccaacgaaaaaaggcgagaaaaacgcctttcaatatgctgaa KF744406 atgaataaccaacgaaaaaaggcgagaaaaacgcctttcaatatgctgaa KF744407 atgaataaccaacgaaaaaaggcgagaaaaacgcctttcaatatgctgaa KF744408 atgaataaccaacgaaaaaaggcgagaaaaacgcctttcaatatgctgaa JN697058 ATGAACAACCAACGAAAAAAGACGGCTCGACCGTCTTTCAATATGCTGA1 2cgcgagagaaaccgcgtgtcaactgtgcagcagctgacaaagagattct acgcgagagaaaccgcgtgtcaactgtgcagcagctgacaaagagattct acgcgagagaaaccgcgtgtcaactgtgcagcagctgacaaagagattct acgcgagagaaaccgcgtgtcaactgtgcagcagctgacaaagagattct ACGCGAGAGAAACCGCGTGTCAACTGTACAACAGCTGACAAAGAGATTCT acgcgagagaaaccgcgtgtcaactgtgcagcagctgacaaagagattct acgcgagagaaaccgcgtgtcaactgtgcagcagctgacaaagagattct acgcgagagaaaccgcgtgtcaactgtgcagcagctgacaaagagattct acgcgagagaaaccgcgtgtcaactgtgcagcagctgacaaagagattct acgcgagagaaaccgcgtgtcaactgtgcagcagctgacaaagagattct acgcgagagaaaccgcgtgtcaactgtgcagcagctgacaaagagattct acgcgagagaaaccgcgtgtcaactgtgcagcagctgacaaagagattct ACGCGCGAGAAACCGCGTGTCAACTGTTTCACAGTTGGCGAAGAGATTC2 3acttggaatgctgcagggacgaggaccattgaaactgttcatggccctg cacttggaatgctgcagggacgaggaccattgaaactgttcatggccctg cacttggaatgctgcagggacgaggaccattgaaactgttcatggccctg cacttggaatgctgcagggacgaggaccatt------------------- CACTTGGAATGCTGCAGGGACGAGGACCATTAAAACTATTCATGGCCCTG cacttggaatgctgcagggacgaggaccattgaaactgttcatggccctg cacttggaatgctgcagggacgaggaccattgaaactgttcatggccctg cacttggaatgctgcagggacgaggaccattgaaactgttcatggccctg cacttggaatgctgcagggacgaggaccattgaaactgttcatggccctg cacttggaatgctgcagggacgaggaccattgaaactgttcatggccctg cacttggaatgctgcagggacgaggaccattgaaactgttcatggccctg cacttggaatgctgcagggacgaggaccattgaaactgttcatggccctg CAAAAGGATTGCTCTCAGGCCAAGGACCCATGAAACTGGTGATGGCTTT3 4agaagaggaagaggcaggagtcttgtggtag-----------------4 -------------------------------------------------- gagaagaggaagaggcaggagtcttgtggtagttcagaagagaagaggaa gagaagaggaagaggcaggagtcttgtggtag------------------ GAGAAGAGGAAGAGGCAGGAGTCCTGTGGTAG------------------ gagaagaggaagaggcaggagtcttgtggtag------------------ gagaagaggaagaggcaggagtcttgtggtag------------------ gagaagaggaagaggcaggagtcttgtggtag------------------ gagaagaggaagaggcaggagtcttgtggtag------------------ gagaagaggaagaggcaggagtcttgtggtag------------------ gagaagaggaagaggcaggagtcttgtggtag------------------ gagaagaggaagaggcaggagtcttgtggtag------------------ ACGAGAGTGATCCCGAAGGGGCACTCTGGTGA-----------------4 5-------------------- --------------------- gaggcaggagtcttgtggtag --------------------- --------------------- --------------------- --------------------- --------------------- --------------------- --------------------- --------------------- --------------------- --------------------5 2015-11-16 19:41:20.158 UTC GapsTrimmed_MSAResults0gapsTrimmingparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/axis2/services/MSAGapsTrimming?wsdl gapsTrimming net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegapsTrimming_inputargs00output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity args0 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="gapsTrimming" name="parameters" qname="{http://msa}gapsTrimming"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="args0" qname="{http://msa}&gt;gapsTrimming&gt;args0" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegapsTrimming_outputinput0return00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false return 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="gapsTrimmingResponse" name="parameters" qname="{http://msa}gapsTrimmingResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="return" qname="{http://msa}&gt;gapsTrimmingResponse&gt;return" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegapsTrimmingparametersgapsTrimming_inputoutputgapsTrimming_inputargs0MSA_Results_PhylipgapsTrimming_outputinputgapsTrimmingparametersGapsTrimmed_MSAResultsgapsTrimming_outputreturn bb7ffcaf-89f4-4e57-95c1-6604dbcacb03 2015-11-16 19:41:54.527 UTC b573a110-89ef-4d9b-834a-c37455cf8f04 2015-11-16 19:39:50.236 UTC Display_a_multiple_sdirect_data00 15 449 _T.k9_ TAAAAAAAGG CTCAAACTGG GATTAGATAC CCCACTATGC CTAGCCTTAA _T.k.10_ ---------- --CAAACTGG GATTAGATAC CCCACTATGC CTAGCCTTAA _T.k1_ ---------- -TCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.k2_ -TAAAAAGGC TTCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.k7_ -TAAAAAGGC TTCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.k4_ ---------- -TCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.k3_ -TAAAAAGGC TTCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.k8_ --TAAAAAGC TTCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.m15_ ---AAAAAGC TTCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.m16_ --TAAAAAGC TTCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.ablolab---------- ---------- ---------- ---------- ---------- _T.a11_ --TAAAAAGC TTCAAACTGG GATTAGATAC CCCACTATGC CTAGCCATAA _T.p13_ ---------C TTCAAACTGG GATTAGATAC CCCACTATGC CTAACTATAA _T.p14_ ---------- ---------- ---------- ----CTATGC CTAACTATAA _T.p9_ -TAAAAAAGG CTCAAACTGG GATTAGATAC CCCACTATGC CTAGCTATAA CACACAATCA AACTACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACTACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACCACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACCACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACCACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACCACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACCACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACCACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACCACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CACACAATCA AACCACG-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC -----GAT-A AACTCCGCAG TTGTGTCGCC AATACAACTA CGAGTAATAC CACACAATCA AACTACA-AA TTGT-TCGCC AA-ACAACTA CGAGTAATAC CATACAATCA AACTACA-AA TTGT-TCGCC AA-ACAACTA CGAGAAATAC CATACAATCA AACTACA-AA TTGT-TCGCC AA-ACAACTA CGAGAAATAC CACACAATCA AACTACA-AA TTGT-TCGCC AA-ACAACTA CGAGAAATAC TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCA-CCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCA-CCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCAGCCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCAGCCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCAGCCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCAGCCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCAGCCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCAGCCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCAGCCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCAGCCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA CCCCGACCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGN CGGTACTTCA CCCCGACCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA TCCCGACCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA TCCCGACCTA GAGGAGCCTG TTAAAACTTA AAAGACTTGA CGGTACTTCA TCCCGACCTA GAGGAGCCTG TCCAATAACC GACAACCCAC GATTAACCCA ACCACTTCTC GCCCAACAGT TCCAATAACC GACAACCCAC GATTAACCCA ACCACTTCTC GCCCAACAGT TCCAATAACC GACAATCCAC GATTAACCCA ACCACTTCTC GCCTAACAGT TCCAATAACC GACAATCCAC GATTAACCCA ACCACTTCTC GCCTAACAGT TCCAATAACC GACAATCCAC GATTAACCCA ACCACTTCTC GCCTAACAGT TCCAATAACC GACAATCCAC GATTAACCCA ACCACTTCTC GCCTAACAGT TCCAATAACC GACAATCCAC GATTAACCCA ACCACTTCTC GCCTAACAGT TCCAATAACC GACAATCCAC GATTAACCCA ACCACTTCTC GCCTAACAGT TCCAATAACC GATAACCCAC GATTAACCCA ACCACTTCTC GCCCAACAGT TCCAATAACC GATAACCCAC GATTAACCCA ACCACTTCTC GCCCAACAGT TCTAATAACC GATAACCCAC GATTAACCCA ACCACTTCTT GCCCCACAGT TCTAATAACC GATAACCCAC GATTAACCCA ACCACTTCTT GCCCCACAGT TCTAATAACC GATAACCCAC GATTAACCCA ACCACTTCTT GCCCTACAGT TCTAATAACC GATAACCCAC GATTAACCCA ACCACTTCTT GCCCTACAGT TCTAATAACC GATAACCCAC GATTAACCCA ACCACTTCTT GCCCTACAGT CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGTCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGTCAG CTTACCTTGT AAAAGAAATA AAGTGAGCTA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCCA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCCA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCCA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCCA CTATATACCG CCGTCGCCAG CTTACCTTGT AAAAGAAATA AAGTGAGCCA AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AACAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACTCA TGAAGTGGAC AATAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACCTA TGAAGAGG-C AATAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACCTA TGAAGAGG-C AATAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACCTA TGAAGAGG-T AATAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACCTA TGAAGAGG-T AATAGTAACA CACTAAAACG ACAGGTCGAG GTGTAACCTA TGAAGAGG-T CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTCTGATATT CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTCTGATATT CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTATGAAATT CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTATGAAATT CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTATGAAATT CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTATGAAATT CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTATGAAATT CAAGATGGGC TACATTCTCC AATAGAGCAC ACGAACAACA CTATGAAATT CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTATGAAATT CAAGATGGGC TACATTCTCC AACAGAGCAC ACGAACAACA CTATGAAATT TAAGATGGGC TACATTCTCT AACAGAGA-T ACGAACAACA CTATGAAATT TAAGATGGGC TACATTCTCT AACAGAGA-T ACGAACAACA CTATGAAATT TAAGATGGGC TACATTCTCC AACAGAGAAC ACGAACAACA CTATGAAATT TAAGATGGGC TACATTCTCC AACAGAGAAC ACGAACAACA CTATGAAATT TAAGATGGGC TACATTCTTT AACAGAGAAT ACGAACAACA CTATGAAATT AGCGTTTGAA GGCGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGCGTTTGAA GGCGGATTTA GCAGTAAGAT AAGAATGAAT AAAATACTTA AGTGTTCGAA GGAGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGTGTTCGAA GGAGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGTGTTCGAA GGAGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGTGTTCGAA GGAGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGTGTTCGAA GGAGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGTGTTCGAA GGAGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGTGTTCGAA GGAGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGT-----AA GGAGGATTTA GCAGTAAGAT AAGAAT---- AAAATACTTA AGTGTTCGAA GGCGGATTTA GCAGTAAGAT AAGAAT---- AGAACACCTA AGTGTTCGAA GGCGGATTTA GCAGTAAGAT AAGAAT---- AGAACACCTA AGTGTTCAAA GGCGGATTTA GCAGTAAGAT AAGAAT---- AGAACACCTA AGTGTTCAAA GGCGGATTTA GCAGTAAGAT AAGAAT---- AGAACACCTA AATGTTCAAA GGCGGATTTA GCAGTAAGAT AAGAAT---- AGAACACCTA ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTTG-- ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTT--- ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTTG-- ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTTG-- ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTTG-- ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGT- AC------- ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCC----- ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTCTGG ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTCTG- ACTGAACATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCT---- ACTGAAAATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTTGG- ACTGAAAATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTTG-- ACTGAAAATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTCTGG ACTGAAAATA ACGCAATGAA GTGCGCACAC ACCGCCCGTC ACCCTCTG- ACTGAAAATA ACGCAATGAA G--------- ---------- --------- 2015-09-25 15:20:29.596 UTC outfile0report0jobStatus0run_showAlignparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://wsembnet.vital-it.ch/soaplab2/typed/services/alignment_multiple.showalign?wsdl run net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclearparameters0net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://wsembnet.vital-it.ch/soaplab2/typed/services/alignment_multiple.showalign?wsdl clear net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResultsparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://wsembnet.vital-it.ch/soaplab2/typed/services/alignment_multiple.showalign?wsdl getResults net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_showAlign_inputsequence0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity sequence 0 'text/xml' false matrix_direct_data 0 'text/plain' false matrix_url 0 'text/plain' false refseq 0 'text/plain' false bottom 0 'text/plain' false show 0 'text/plain' false order 0 'text/plain' false similarcase 0 'text/plain' false consensus 0 'text/plain' false uppercase 0 'text/plain' false number 0 'text/plain' false ruler 0 'text/plain' false width 0 'text/plain' false margin 0 'text/plain' false html 0 'text/plain' false highlight 0 'text/plain' false plurality 0 'text/plain' false setcase 0 'text/plain' false identity 0 'text/plain' false gaps 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="run" name="parameters" qname="{http://soaplab.org/showalign}run"><s:elements><s:complextype optional="false" unbounded="false" typename="sequenceInput" name="sequence" qname="appInputs&gt;sequence"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>The sequence alignment to be displayed.</xsd:documentation></xsd:annotation><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="direct_data" qname="sequenceInput&gt;direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="usa" qname="sequenceInput&gt;usa" /><s:basetype optional="true" unbounded="false" typename="string" name="sformat" qname="sequenceInput&gt;sformat" /><s:basetype optional="true" unbounded="false" typename="int" name="sbegin" qname="sequenceInput&gt;sbegin"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Start of sequence(s) to be used </xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="send" qname="sequenceInput&gt;send"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>End of sequence(s) to be used </xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="sprotein" qname="sequenceInput&gt;sprotein"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence is protein</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="snucleotide" qname="sequenceInput&gt;snucleotide"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence is nucleotide</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="sreverse" qname="sequenceInput&gt;sreverse"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Reverse (if DNA)</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="slower" qname="sequenceInput&gt;slower"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Make lower case</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="supper" qname="sequenceInput&gt;supper"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Make upper case</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="string" name="matrix_direct_data" qname="appInputs&gt;matrix_direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="matrix_url" qname="appInputs&gt;matrix_url" /><s:basetype optional="true" unbounded="false" typename="string" name="refseq" qname="appInputs&gt;refseq"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>If you give the number in the alignment or the name of a sequence, it will be taken to be the reference sequence. The reference sequence is always shown in full and is the one against which all the other sequences are compared. If this is set to 0 then the consensus sequence will be used as the reference sequence. By default the consensus sequence is used as the reference sequence.</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="bottom" qname="appInputs&gt;bottom"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>If this is true then the reference sequence is displayed at the bottom of the alignment instead of the top.</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="show" qname="appInputs&gt;show" /><s:basetype optional="true" unbounded="false" typename="string" name="order" qname="appInputs&gt;order" /><s:basetype optional="true" unbounded="false" typename="boolean" name="similarcase" qname="appInputs&gt;similarcase"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>If this is set True, then when -show is set to 'Similarities' or 'Non-identities' and a residue is similar but not identical to the reference sequence residue, it will be changed to lower-case. If -show is set to 'All' then non-identical, non-similar residues will be changed to lower-case. If this is False then no change to the case of the residues is made on the basis of their similarity to the reference sequence.</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="consensus" qname="appInputs&gt;consensus"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>If this is true then the consensus line is displayed.</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="uppercase" qname="appInputs&gt;uppercase"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Regions to put in uppercase. If this is left blank, then the sequence case is left alone. A set of regions is specified by a set of pairs of positions. The positions are integers. They are separated by any non-digit, non-alpha character. Examples of region specifications are: 24-45, 56-78 1:45, 67=99;765..888 1,5,8,10,23,45,57,99</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="number" qname="appInputs&gt;number"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>If this option is true then a line giving the positions in the alignment is displayed every 10 characters above the alignment.</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="ruler" qname="appInputs&gt;ruler"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>If this option is true then a ruler line marking every 5th and 10th character in the alignment is displayed.</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="long" name="width" qname="appInputs&gt;width" /><s:basetype optional="true" unbounded="false" typename="long" name="margin" qname="appInputs&gt;margin"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>This sets the length of the left-hand margin for sequence names. If the margin is set at 0 then no margin and no names are displayed. If the margin is set to a value that is less than the length of a sequence name then the sequence name is displayed truncated to the length of the margin. If the margin is set to -1 then the minimum margin width that will allow all the sequence names to be displayed in full plus a space at the end of the name will automatically be selected.</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="html" qname="appInputs&gt;html" /><s:basetype optional="true" unbounded="false" typename="string" name="highlight" qname="appInputs&gt;highlight"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Regions to colour if formatting for HTML. If this is left blank, then the sequence is left alone. A set of regions is specified by a set of pairs of positions. The positions are integers. They are followed by any valid HTML font colour. Examples of region specifications are: 24-45 blue 56-78 orange 1-100 green 120-156 red A file of ranges to colour (one range per line) can be specified as '@filename'.</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="float" name="plurality" qname="appInputs&gt;plurality"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Set a cut-off for the % of positive scoring matches below which there is no consensus. The default plurality is taken as 50% of the total weight of all the sequences in the alignment.</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="float" name="setcase" qname="appInputs&gt;setcase"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sets the threshold for the scores of the positive matches above which the consensus is in upper-case and below which the consensus is in lower-case. By default this is set to be half of the (weight-adjusted) number of sequences in the alignment.</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="float" name="identity" qname="appInputs&gt;identity"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Provides the facility of setting the required number of identities at a position for it to give a consensus. Therefore, if this is set to 100% only columns of identities contribute to the consensus.</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="gaps" qname="appInputs&gt;gaps"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>If this option is true then gap characters can appear in the consensus. The alternative is 'N' for nucleotide, or 'X' for protein</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeshowAlign_sequencedirect_data0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity direct_data 0 'text/plain' false usa 0 'text/plain' false sformat 0 'text/plain' false sbegin 0 'text/plain' false send 0 'text/plain' false sprotein 0 'text/plain' false snucleotide 0 'text/plain' false sreverse 0 'text/plain' false slower 0 'text/plain' false supper 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="sequenceInput" name="sequence" qname="appInputs&gt;sequence"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>The sequence alignment to be displayed.</xsd:documentation></xsd:annotation><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="direct_data" qname="sequenceInput&gt;direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="usa" qname="sequenceInput&gt;usa" /><s:basetype optional="true" unbounded="false" typename="string" name="sformat" qname="sequenceInput&gt;sformat" /><s:basetype optional="true" unbounded="false" typename="int" name="sbegin" qname="sequenceInput&gt;sbegin"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Start of sequence(s) to be used </xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="send" qname="sequenceInput&gt;send"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>End of sequence(s) to be used </xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="sprotein" qname="sequenceInput&gt;sprotein"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence is protein</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="snucleotide" qname="sequenceInput&gt;snucleotide"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence is nucleotide</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="sreverse" qname="sequenceInput&gt;sreverse"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Reverse (if DNA)</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="slower" qname="sequenceInput&gt;slower"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Make lower case</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="supper" qname="sequenceInput&gt;supper"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Make upper case</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_showAlign_outputinput0jobId00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobId 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="runResponse" name="parameters" qname="{http://soaplab.org/typedws}runResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="runResponse&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclear_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="clear" name="parameters" qname="{http://soaplab.org/typedws}clear"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="clearRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclear_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="clearRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResults" name="parameters" qname="{http://soaplab.org/typedws}getResults"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokenestedjobId0jobStatus00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.5</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>jobStatus</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + jobStatus.matches(".*RUNNING.*"); if ("true".matches(loop)) { Thread.sleep(1000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_outputinput0outfile00report00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false report 0 'text/plain' 0 detailed_status 0 'text/plain' 0 outfile 0 'text/plain' 0 outfile_url 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResultsResponse" name="parameters" qname="{http://soaplab.org/showalign}getResultsResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="report" qname="appResults&gt;report" /><s:basetype optional="true" unbounded="false" typename="long" name="detailed_status" qname="appResults&gt;detailed_status" /><s:basetype optional="true" unbounded="false" typename="string" name="outfile" qname="appResults&gt;outfile" /><s:basetype optional="true" unbounded="false" typename="string" name="outfile_url" qname="appResults&gt;outfile_url" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_showAlignparametersrun_showAlign_inputoutputclearparametersclear_inputoutputgetResultsparametersgetResults_inputoutputrun_showAlign_inputsequenceshowAlign_sequenceoutputshowAlign_sequencedirect_datadirect_datarun_showAlign_outputinputrun_showAlignparametersclear_inputjobIdclear_jobIdoutputclear_jobIdjobIdrun_showAlign_outputjobIdgetResults_inputjobIdgetResults_jobIdoutputgetResults_jobIdjobIdrun_showAlign_outputjobIdnestedjobIdrun_showAlign_outputjobIdgetResults_outputinputgetResultsparametersoutfilegetResults_outputoutfilereportgetResults_outputreportjobStatusnestedjobStatus 61ae19f3-9e53-4484-9746-fdce7a423360 2015-09-25 15:27:51.8 UTC 33f24c6b-4d92-4797-8890-d13c383c4ae8 2015-09-25 15:25:37.872 UTC Display a multiple sequence alignment in pretty format 2015-09-25 15:13:29.814 UTC 93d5a546-13fb-421a-a9c0-8f88389b0958 2015-09-25 15:34:55.171 UTC cf8d6cbe-3b1b-4b98-bd43-19cfb41cb5b8 2015-09-25 15:41:46.837 UTC 16ceadbe-f990-41a3-b24c-6286a494fb19 2015-11-02 10:26:30.218 UTC 688e86a8-e309-40cf-ba19-0bddc81481e5 2015-09-25 15:20:41.877 UTC Workflow15outgrno00 13 2015-10-13 16:40:37.878 UTC intreefile00 /home/kasikrit/apache-tomcat-8.0.26/webapps/soaplab2/results/[phylogeny_molecular_sequence.fdnapars]_5f731ccb.153ad11c847._7fb6_outtreefile.treefile 2016-03-25 20:50:55.886 UTC jobId0jobStatus0outfile0outtreefile0report0getResultsparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_consensus.fconsense?wsdl getResults net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclearparameters0net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_consensus.fconsense?wsdl clear net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_fconsense_local_outputinput0jobId00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobId 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="runResponse" name="parameters" qname="{http://soaplab.org/typedws}runResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="runResponse&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeroot_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResults" name="parameters" qname="{http://soaplab.org/typedws}getResults"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_outputinput0outfile00outtreefile00report00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false report 0 'text/plain' 0 detailed_status 0 'text/plain' 0 outfile 0 'text/plain' 0 outfile_url 0 'text/plain' 0 outtreefile 0 'text/plain' 0 outtreefile_url 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResultsResponse" name="parameters" qname="{http://soaplab.org/fconsense}getResultsResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="report" qname="appResults&gt;report" /><s:basetype optional="true" unbounded="false" typename="long" name="detailed_status" qname="appResults&gt;detailed_status" /><s:basetype optional="true" unbounded="false" typename="string" name="outfile" qname="appResults&gt;outfile" /><s:basetype optional="true" unbounded="false" typename="string" name="outfile_url" qname="appResults&gt;outfile_url" /><s:basetype optional="true" unbounded="false" typename="string" name="outtreefile" qname="appResults&gt;outtreefile" /><s:basetype optional="true" unbounded="false" typename="string" name="outtreefile_url" qname="appResults&gt;outtreefile_url" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokenestedjobId0jobStatus00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.5</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>jobStatus</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + jobStatus.equals("RUNNING"); if ("true".matches(loop)) { Thread.sleep(2000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclear_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="clear" name="parameters" qname="{http://soaplab.org/typedws}clear"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="clearRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclear_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="clearRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerunparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_consensus.fconsense?wsdl run net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_inputroot0intreefile0outgrno0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity intreefile 0 'text/plain' false method 0 'text/plain' false mlfrac 0 'text/plain' false root 0 'text/plain' false outgrno 0 'text/plain' false trout 0 'text/plain' false progress 0 'text/plain' false treeprint 0 'text/plain' false prntsets 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="run" name="parameters" qname="{http://soaplab.org/fconsense}run"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="intreefile" qname="appInputs&gt;intreefile" /><s:basetype optional="true" unbounded="false" typename="string" name="method" qname="appInputs&gt;method" /><s:basetype optional="true" unbounded="false" typename="float" name="mlfrac" qname="appInputs&gt;mlfrac" /><s:basetype optional="true" unbounded="false" typename="boolean" name="root" qname="appInputs&gt;root" /><s:basetype optional="true" unbounded="false" typename="long" name="outgrno" qname="appInputs&gt;outgrno" /><s:basetype optional="true" unbounded="false" typename="boolean" name="trout" qname="appInputs&gt;trout" /><s:basetype optional="true" unbounded="false" typename="boolean" name="progress" qname="appInputs&gt;progress" /><s:basetype optional="true" unbounded="false" typename="boolean" name="treeprint" qname="appInputs&gt;treeprint" /><s:basetype optional="true" unbounded="false" typename="boolean" name="prntsets" qname="appInputs&gt;prntsets" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResultsparametersgetResults_inputoutputclearparametersclear_inputoutputrun_fconsense_local_outputinputrunparametersgetResults_inputjobIdgetResults_jobIdoutputgetResults_jobIdjobIdrun_fconsense_local_outputjobIdgetResults_outputinputgetResultsparametersnestedjobIdrun_fconsense_local_outputjobIdclear_inputjobIdclear_jobIdoutputclear_jobIdjobIdrun_fconsense_local_outputjobIdrunparametersrun_inputoutputrun_inputrootroot_valuevaluerun_inputintreefileintreefilerun_inputoutgrnooutgrnojobIdrun_fconsense_local_outputjobIdjobStatusnestedjobStatusoutfilegetResults_outputoutfileouttreefilegetResults_outputouttreefilereportgetResults_outputreport acf9e94b-359e-48a7-8918-af02132520b6 2015-10-15 16:45:57.109 UTC a272ee07-dcda-487c-a8dc-62bd74c6e4e9 2016-03-25 20:50:58.285 UTC bda6819e-5610-452a-be2f-288737541799 2015-10-15 17:24:00.626 UTC bade0670-136d-4c08-95b2-b23281777128 2015-10-15 18:52:48.37 UTC f6c52767-49a3-409e-90ab-f96c5ff7f31b 2015-10-13 16:11:35.61 UTC 8a4976e2-0ce9-4ba3-92fb-f53cb75f65a4 2015-10-15 16:59:38.956 UTC ad115fcf-5f88-41d7-b6f2-1bb62e230c55 2015-10-15 17:26:09.21 UTC e666ce8b-8df6-487b-8d4d-0f6a425f18aa 2015-10-15 16:28:11.909 UTC a63183cf-6275-4c91-b0a7-6ab64902adc7 2015-10-15 17:07:09.430 UTC b8c8f940-7e0e-4239-94e7-04a929a5154e 2015-10-15 17:25:09.388 UTC afc73992-cb34-4c97-bfeb-af1ac8bb31c0 2015-10-15 16:39:58.78 UTC 9ca54719-8360-402d-9ba4-cd83c937026d 2015-10-13 16:40:39.605 UTC nestedjobId00jobStatus0getStatusparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_molecular_sequence.fseqboot?wsdl getStatus net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatus" name="parameters" qname="{http://soaplab.org/typedws}getStatus"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getStatusRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getStatusRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_outputinput0jobStatus00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobStatus 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatusResponse" name="parameters" qname="{http://soaplab.org/typedws}getStatusResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobStatus" qname="jobStatus&gt;jobStatus" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatusparametersgetStatus_inputoutputgetStatus_inputjobIdgetStatus_jobIdoutputgetStatus_jobIdjobIdjobIdgetStatus_outputinputgetStatusparametersjobStatusgetStatus_outputjobStatus 8be89cba-f390-4a60-8f6d-945a118c2e2c 2015-10-07 07:52:43.689 UTC nested 2015-10-07 07:51:45.967 UTC nestedjobId00jobStatus0getStatusparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_distance_matrix.fneighbor?wsdl getStatus net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatus" name="parameters" qname="{http://soaplab.org/typedws}getStatus"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getStatusRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getStatusRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_outputinput0jobStatus00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobStatus 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatusResponse" name="parameters" qname="{http://soaplab.org/typedws}getStatusResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobStatus" qname="jobStatus&gt;jobStatus" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatusparametersgetStatus_inputoutputgetStatus_inputjobIdgetStatus_jobIdoutputgetStatus_jobIdjobIdjobIdgetStatus_outputinputgetStatusparametersjobStatusgetStatus_outputjobStatus nested 2015-10-13 10:57:37.346 UTC 5d8c75b7-b7ea-46ef-9aa2-f947e8d58a41 2015-10-13 10:58:05.991 UTC nestedjobId00jobStatus0getStatusparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://wsembnet.vital-it.ch/soaplab2/typed/services/alignment_multiple.showalign?wsdl getStatus net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatus" name="parameters" qname="{http://soaplab.org/typedws}getStatus"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getStatusRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getStatusRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatus_outputinput0jobStatus00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobStatus 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getStatusResponse" name="parameters" qname="{http://soaplab.org/typedws}getStatusResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobStatus" qname="jobStatus&gt;jobStatus" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatusparametersgetStatus_inputoutputgetStatus_inputjobIdgetStatus_jobIdoutputgetStatus_jobIdjobIdjobIdgetStatus_outputinputgetStatusparametersjobStatusgetStatus_outputjobStatus ff99d381-6d9d-4d2e-91e2-c94daebd48c4 2015-09-25 15:20:42.75 UTC nested 2015-09-25 15:17:12.18 UTC Workflow7sequence00stype00 protein dna rna 2015-10-11 08:46:10.838 UTC protein 2015-10-11 08:46:12.211 UTC jobId0status0output0run_ebi_clustalOparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://www.ebi.ac.uk/Tools/services/soap/clustalo?wsdl run net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResultparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://www.ebi.ac.uk/Tools/services/soap/clustalo?wsdl getResult net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_ebi_clustalO_inputparameters0email0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity email 0 'text/plain' false title 0 'text/plain' false parameters 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="run" name="parameters" qname="{http://soap.jdispatcher.ebi.ac.uk}run"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="email" qname="&gt;run&gt;email"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>User email address</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="title" qname="&gt;run&gt;title"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>A title to identify the analysis job</xsd:documentation></xsd:annotation></s:basetype><s:complextype optional="false" unbounded="false" typename="InputParameters" name="parameters" qname="&gt;run&gt;parameters"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>The list of parameters to be used for launching the analysis</xsd:documentation></xsd:annotation><s:elements><s:basetype optional="true" unbounded="false" typename="boolean" name="guidetreeout" qname="InputParameters&gt;guidetreeout"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Output guide tree [Output guide tree.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="dismatout" qname="InputParameters&gt;dismatout"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Output distance matrix [Output distance matrix. This is only calculated if the mBed-like clustering guide tree is set to false.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="dealign" qname="InputParameters&gt;dealign"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Dealign input sequences [Remove any existing alignment (gaps) from input sequences.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="mbed" qname="InputParameters&gt;mbed"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>mBed-like clustering guide tree [This option uses a sample of the input sequences and then represents all sequences as vectors to these sequences, enabling much more rapid generation of the guide tree, especially when the number of sequences is large.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="mbediteration" qname="InputParameters&gt;mbediteration"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>mBed-like clustering iteration [Use mBed-like clustering during subsequent iterations.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="iterations" qname="InputParameters&gt;iterations"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Number of iterations [Number of (combined guide-tree/HMM) iterations.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="gtiterations" qname="InputParameters&gt;gtiterations"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Maximum guide tree iterations [Having set the number of combined iterations, this parameter can be changed to limit the number of guide tree iterations within the combined iterations.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="hmmiterations" qname="InputParameters&gt;hmmiterations"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Maximum HMM iterations [Having set the number of combined iterations, this parameter can be changed to limit the number of HMM iterations within the combined iterations.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="outfmt" qname="InputParameters&gt;outfmt"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Output alignment format [Format for generated multiple sequence alignment.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="order" qname="InputParameters&gt;order"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Output order [The order in which the sequences appear in the final alignment]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="stype" qname="InputParameters&gt;stype"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence Type [Defines the type of the sequences to be aligned]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="sequence" qname="InputParameters&gt;sequence"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence [Three or more sequences to be aligned can be entered directly into this box. Sequences can be be in GCG, FASTA, EMBL, GenBank, PIR, NBRF, PHYLIP or UniProtKB/Swiss-Prot format. Partially formatted sequences are not accepted. Adding a return to the end of the sequence may help certain applications understand the input. Note that directly using data from word processors may yield unpredictable results as hidden/control characters may be present. There is currently a limit of 2000 sequences and 2MB of data.]</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeclustalO_inputsequence0stype0outfmt0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity guidetreeout 0 'text/plain' false dismatout 0 'text/plain' false dealign 0 'text/plain' false mbed 0 'text/plain' false mbediteration 0 'text/plain' false iterations 0 'text/plain' false gtiterations 0 'text/plain' false hmmiterations 0 'text/plain' false outfmt 0 'text/plain' false order 0 'text/plain' false stype 0 'text/plain' false sequence 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="InputParameters" name="parameters" qname="&gt;run&gt;parameters"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>The list of parameters to be used for launching the analysis</xsd:documentation></xsd:annotation><s:elements><s:basetype optional="true" unbounded="false" typename="boolean" name="guidetreeout" qname="InputParameters&gt;guidetreeout"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Output guide tree [Output guide tree.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="dismatout" qname="InputParameters&gt;dismatout"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Output distance matrix [Output distance matrix. This is only calculated if the mBed-like clustering guide tree is set to false.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="dealign" qname="InputParameters&gt;dealign"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Dealign input sequences [Remove any existing alignment (gaps) from input sequences.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="mbed" qname="InputParameters&gt;mbed"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>mBed-like clustering guide tree [This option uses a sample of the input sequences and then represents all sequences as vectors to these sequences, enabling much more rapid generation of the guide tree, especially when the number of sequences is large.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="boolean" name="mbediteration" qname="InputParameters&gt;mbediteration"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>mBed-like clustering iteration [Use mBed-like clustering during subsequent iterations.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="iterations" qname="InputParameters&gt;iterations"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Number of iterations [Number of (combined guide-tree/HMM) iterations.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="gtiterations" qname="InputParameters&gt;gtiterations"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Maximum guide tree iterations [Having set the number of combined iterations, this parameter can be changed to limit the number of guide tree iterations within the combined iterations.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="int" name="hmmiterations" qname="InputParameters&gt;hmmiterations"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Maximum HMM iterations [Having set the number of combined iterations, this parameter can be changed to limit the number of HMM iterations within the combined iterations.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="outfmt" qname="InputParameters&gt;outfmt"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Output alignment format [Format for generated multiple sequence alignment.]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="order" qname="InputParameters&gt;order"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Output order [The order in which the sequences appear in the final alignment]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="stype" qname="InputParameters&gt;stype"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence Type [Defines the type of the sequences to be aligned]</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="sequence" qname="InputParameters&gt;sequence"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Sequence [Three or more sequences to be aligned can be entered directly into this box. Sequences can be be in GCG, FASTA, EMBL, GenBank, PIR, NBRF, PHYLIP or UniProtKB/Swiss-Prot format. Partially formatted sequences are not accepted. Adding a return to the end of the sequence may help certain applications understand the input. Note that directly using data from word processors may yield unpredictable results as hidden/control characters may be present. There is currently a limit of 2000 sequences and 2MB of data.]</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeemail_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity kasikrit@gmail.com net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclustal_numvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity clustal_num net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_ebi_clustalO_outputinput0jobId00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobId 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="runResponse" name="parameters" qname="{http://soap.jdispatcher.ebi.ac.uk}runResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="&gt;runResponse&gt;jobId"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>A unique identifier for the analysis job</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResult_inputjobId0type0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false type 0 'text/plain' false parameters 1 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResult" name="parameters" qname="{http://soap.jdispatcher.ebi.ac.uk}getResult"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="&gt;getResult&gt;jobId"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>An identifier for the job to check</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="false" unbounded="false" typename="string" name="type" qname="&gt;getResult&gt;type"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>The renderer to be used to format the output</xsd:documentation></xsd:annotation></s:basetype><s:arraytype optional="true" unbounded="false" wrapped="false" typename="wsRawOutputParameters" name="parameters" qname="&gt;getResult&gt;parameters"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>A list of parameters to be passed on to the renderer</xsd:documentation></xsd:annotation><s:elementtype><s:complextype optional="false" unbounded="false" typename="wsRawOutputParameter" name="" qname="{http://soap.jdispatcher.ebi.ac.uk}wsRawOutputParameter"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="name" qname="wsRawOutputParameter&gt;name"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>The name of the parameter</xsd:documentation></xsd:annotation></s:basetype><s:arraytype optional="false" unbounded="false" wrapped="true" typename="ArrayOfString" name="value" qname="wsRawOutputParameter&gt;value"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>The parameter value as an array of String</xsd:documentation></xsd:annotation><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="" qname="{http://www.w3.org/2001/XMLSchema}string" /></s:elementtype></s:arraytype></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResult_outputinput0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false output 0 'application/octet-stream' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResultResponse" name="parameters" qname="{http://soap.jdispatcher.ebi.ac.uk}getResultResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="base64Binary" name="output" qname="&gt;getResultResponse&gt;output"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>Base64 encoded data corresponding to the output of the job formatted by the renderer</xsd:documentation></xsd:annotation></s:basetype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokenestedjobId0status00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.5</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>status</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + status.matches(".*RUNNING.*"); if ("true".matches(loop)) { Thread.sleep(2000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketype_pimvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity pim net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_ebi_clustalOparametersrun_ebi_clustalO_inputoutputgetResultparametersgetResult_inputoutputrun_ebi_clustalO_inputparametersclustalO_inputoutputrun_ebi_clustalO_inputemailemail_valuevalueclustalO_inputsequencesequenceclustalO_inputstypestypeclustalO_inputoutfmtclustal_numvaluerun_ebi_clustalO_outputinputrun_ebi_clustalOparametersgetResult_inputjobIdrun_ebi_clustalO_outputjobIdgetResult_inputtypetype_pimvaluegetResult_outputinputgetResultparametersnestedjobIdrun_ebi_clustalO_outputjobIdjobIdrun_ebi_clustalO_outputjobIdstatusnestedstatusoutputgetResult_outputoutput 69914d41-2bd1-4699-b3ef-cd2a82aa031c 2015-10-17 12:40:56.616 UTC d16660e9-7b1d-4266-9f59-8a746b674dde 2015-10-11 09:07:13.347 UTC c63c9a44-c024-42c7-b9d5-d30ab7ba973c 2015-10-11 10:46:50.240 UTC 4b6d28ef-2619-45b8-947a-f14ad6c3e710 2015-10-11 08:57:17.246 UTC fbc24586-97cf-471a-b011-f164cdbee929 2015-10-11 10:43:04.473 UTC f8c3ed4c-363f-42d9-9309-2ac5bd1cc2ce 2015-10-11 08:55:31.309 UTC 85ed5936-381c-4b39-b6a3-8b3ed295d205 2015-10-11 09:08:07.998 UTC 0f5be853-39f8-47c2-8895-b6ea48b6adab 2015-10-11 10:46:08.157 UTC 7bdfffb0-1012-4059-8e6b-957d2714db9d 2015-10-11 08:58:35.396 UTC 0055fa36-bc7b-443b-89ec-3b84fd5f8429 2015-10-17 13:09:58.716 UTC 22984cf0-bc7b-4723-b94c-3f0ad74cd6cd 2015-10-11 09:05:29.774 UTC Workflow8fseqbootfile00 /home/kasikrit/Taverna/NCBI_Dengue/DNA/Reps10/output-nogap.fseqboot 2015-10-16 14:44:59.301 UTC jobId0outfile0report0outfile_url0jobStatus0fullPath_output0run_fdnadist_local_outputinput0jobId00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobId 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="runResponse" name="parameters" qname="{http://soaplab.org/typedws}runResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="runResponse&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResultsparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_molecular_sequence.fdnadist?wsdl getResults net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclearparameters0net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_molecular_sequence.fdnadist?wsdl clear net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResults" name="parameters" qname="{http://soaplab.org/typedws}getResults"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_outputinput0outfile00report00outfile_url00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false report 0 'text/plain' 0 detailed_status 0 'text/plain' 0 outfile 0 'text/plain' 0 outfile_url 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResultsResponse" name="parameters" qname="{http://soaplab.org/fdnadist}getResultsResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="report" qname="appResults&gt;report" /><s:basetype optional="true" unbounded="false" typename="long" name="detailed_status" qname="appResults&gt;detailed_status" /><s:basetype optional="true" unbounded="false" typename="string" name="outfile" qname="appResults&gt;outfile" /><s:basetype optional="true" unbounded="false" typename="string" name="outfile_url" qname="appResults&gt;outfile_url" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclear_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="clear" name="parameters" qname="{http://soaplab.org/typedws}clear"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="clearRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclear_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="clearRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatusjobId0jobStatus00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.5</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>jobStatus</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + jobStatus.equals("RUNNING"); if ("true".matches(loop)) { Thread.sleep(2000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeauto_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemethod_valuevalue00 [F84 distance model] Choose the method to use (Values: f (F84 distance model); k (Kimura 2-parameter distance); j (Jukes-Cantor distance); l (LogDet distance); s (Similarity table)) 2015-10-12 15:52:23.815 UTC net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity k net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_fdnadist_local2parameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_molecular_sequence.fdnadist?wsdl run net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_fdnadist_local2_inputauto0method0fseqbootfile0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity fseqbootfile 0 'text/plain' false method 0 'text/plain' false gamma 0 'text/plain' false ncategories 0 'text/plain' false rate 0 'text/plain' false categories_direct_data 0 'text/plain' false categories_url 0 'text/plain' false weights_direct_data 0 'text/plain' false weights_url 0 'text/plain' false gammacoefficient 0 'text/plain' false invarfrac 0 'text/plain' false ttratio 0 'text/plain' false freqsfrom 0 'text/plain' false basefreq 0 'text/plain' false lower 0 'text/plain' false humanreadable 0 'text/plain' false printdata 0 'text/plain' false auto 0 'text/plain' false progress 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="run" name="parameters" qname="{http://soaplab.org/fdnadist}run"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="fseqbootfile" qname="appInputs&gt;fseqbootfile"><xsd:annotation xmlns:xsd="http://www.w3.org/2001/XMLSchema"><xsd:documentation>File containing one or more sequence alignments</xsd:documentation></xsd:annotation></s:basetype><s:basetype optional="true" unbounded="false" typename="string" name="method" qname="appInputs&gt;method" /><s:basetype optional="true" unbounded="false" typename="string" name="gamma" qname="appInputs&gt;gamma" /><s:basetype optional="true" unbounded="false" typename="long" name="ncategories" qname="appInputs&gt;ncategories" /><s:basetype optional="true" unbounded="false" typename="string" name="rate" qname="appInputs&gt;rate" /><s:basetype optional="true" unbounded="false" typename="string" name="categories_direct_data" qname="appInputs&gt;categories_direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="categories_url" qname="appInputs&gt;categories_url" /><s:basetype optional="true" unbounded="false" typename="string" name="weights_direct_data" qname="appInputs&gt;weights_direct_data" /><s:basetype optional="true" unbounded="false" typename="string" name="weights_url" qname="appInputs&gt;weights_url" /><s:basetype optional="true" unbounded="false" typename="float" name="gammacoefficient" qname="appInputs&gt;gammacoefficient" /><s:basetype optional="true" unbounded="false" typename="float" name="invarfrac" qname="appInputs&gt;invarfrac" /><s:basetype optional="true" unbounded="false" typename="float" name="ttratio" qname="appInputs&gt;ttratio" /><s:basetype optional="true" unbounded="false" typename="boolean" name="freqsfrom" qname="appInputs&gt;freqsfrom" /><s:basetype optional="true" unbounded="false" typename="string" name="basefreq" qname="appInputs&gt;basefreq" /><s:basetype optional="true" unbounded="false" typename="boolean" name="lower" qname="appInputs&gt;lower" /><s:basetype optional="true" unbounded="false" typename="boolean" name="humanreadable" qname="appInputs&gt;humanreadable" /><s:basetype optional="true" unbounded="false" typename="boolean" name="printdata" qname="appInputs&gt;printdata" /><s:basetype optional="true" unbounded="false" typename="boolean" name="auto" qname="appInputs&gt;auto" /><s:basetype optional="true" unbounded="false" typename="boolean" name="progress" qname="appInputs&gt;progress" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGETFILEPATHJobId0fullPath_output00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_fdnadist_local_outputinputrun_fdnadist_local2parametersgetResultsparametersgetResults_inputoutputclearparametersclear_inputoutputgetResults_inputjobIdgetResults_jobIdoutputgetResults_jobIdjobIdrun_fdnadist_local_outputjobIdgetResults_outputinputgetResultsparametersclear_inputjobIdclear_jobIdoutputclear_jobIdjobIdrun_fdnadist_local_outputjobIdgetStatusjobIdrun_fdnadist_local_outputjobIdrun_fdnadist_local2parametersrun_fdnadist_local2_inputoutputrun_fdnadist_local2_inputautoauto_valuevaluerun_fdnadist_local2_inputmethodmethod_valuevaluerun_fdnadist_local2_inputfseqbootfilefseqbootfileGETFILEPATHJobIdrun_fdnadist_local_outputjobIdjobIdrun_fdnadist_local_outputjobIdoutfilegetResults_outputoutfilereportgetResults_outputreportoutfile_urlgetResults_outputoutfile_urljobStatusgetStatusjobStatusfullPath_outputGETFILEPATHfullPath_output a0d9f474-48d1-4c5a-bc0b-05897dd5596f 2015-10-12 15:53:09.113 UTC 9c3a2992-aa5b-4684-a2c6-bce079cc85ea 2015-10-15 14:31:09.997 UTC 0be7d744-90c9-4199-83ca-fb8582e46386 2015-10-08 19:09:37.367 UTC c03ab233-cd68-4165-b8ef-5fa7349daab2 2015-10-16 14:45:00.863 UTC cbf01db7-7b9d-4e9b-a5bf-80bebd52b187 2015-10-08 19:09:09.568 UTC 9d157725-b3ea-49a6-ab37-5fc1b9caf1a4 2015-10-16 15:57:22.263 UTC 3deebde7-0b23-4262-bdc1-c91b82f325b3 2015-10-15 14:33:11.749 UTC c8533ee7-4ae6-45da-b4c6-9c5ab174eb8e 2015-10-16 15:54:36.228 UTC 6e9373a2-64f0-4b5a-8dc3-4fcf735ca95a 2015-10-12 15:42:10.583 UTC 6a86d9ff-54d4-41aa-91dc-f45a163929f7 2015-10-12 15:46:38.264 UTC Workflow1pimDirectData00 # # # Percent Identity Matrix - created by Clustal2.1 # # 1: JN697058 100.00 67.94 67.66 67.73 67.66 67.66 67.66 67.66 67.66 67.66 67.66 67.66 67.66 2: KF744401 67.94 100.00 92.17 92.15 92.17 92.17 92.17 92.17 92.17 92.17 92.17 92.17 92.17 3: KF744397 67.66 92.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 4: KF744398 67.73 92.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 5: KF744399 67.66 92.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 6: KF744400 67.66 92.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 7: KF744402 67.66 92.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 8: KF744403 67.66 92.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 9: KF744404 67.66 92.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 10: KF744405 67.66 92.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 11: KF744406 67.66 92.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 12: KF744407 67.66 92.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 13: KF744408 67.66 92.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 2015-10-25 18:49:47.571 UTC algorithm0MSASimScores0BeanshellsimScore0algorithm00net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity simScore 0 text/plain java.lang.String true algorithm 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecalSimilarityScoreparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/axis2/services/MSASimilarityEstimation?wsdl calSimilarityScore net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecalSimilarityScore_inputargs00output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity args0 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="calSimilarityScore" name="parameters" qname="{http://service.pojo.sample}calSimilarityScore"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="args0" qname="{http://service.pojo.sample}&gt;calSimilarityScore&gt;args0" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecalSimilarityScore_outputinput0return00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false return 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="calSimilarityScoreResponse" name="parameters" qname="{http://service.pojo.sample}calSimilarityScoreResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="double" name="return" qname="{http://service.pojo.sample}&gt;calSimilarityScoreResponse&gt;return" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBeanshellsimScorecalSimilarityScore_outputreturncalSimilarityScoreparameterscalSimilarityScore_inputoutputcalSimilarityScore_inputargs0pimDirectDatacalSimilarityScore_outputinputcalSimilarityScoreparametersalgorithmBeanshellalgorithmMSASimScorescalSimilarityScore_outputreturn 15372ff4-1007-4606-bbf8-f941582dbbce 2015-10-25 19:28:31.663 UTC ec036e9d-847a-4067-9cdb-4bdfd6b405c0 2015-10-25 19:07:10.92 UTC 9eafc07e-e4bb-4bbc-9a2f-67fb8c6dc445 2015-10-25 19:05:47.313 UTC add90e00-d97e-4340-a504-e874ff836d55 2015-10-25 19:27:20.2 UTC c7a35313-a57d-460b-b134-79d34430af0e 2015-10-25 19:24:40.801 UTC f4fe6d02-5b4e-40c6-9ee2-7fdede751c97 2015-10-25 19:15:44.377 UTC 98e18c06-5ad1-47dd-81f0-6b72b0347139 2015-10-25 18:54:09.625 UTC 2c77ac78-97bf-48ef-9493-5a818d530fde 2015-10-25 19:14:55.775 UTC 62697098-c92f-4fe3-b5f3-01d09ce685a5 2015-10-25 19:03:14.81 UTC 47333da1-a3f3-47e4-8298-ef9f20c1d02f 2015-10-25 19:14:28.491 UTC 8e6fb7e0-b0e5-465b-a8f1-58f8597922b3 2015-10-25 18:49:48.924 UTC 13308502-5252-4f82-818d-b74fb98008a2 2016-03-25 20:32:14.301 UTC ccb1e039-8baf-444e-890a-4da8d461ae25 2015-10-25 19:22:46.792 UTC 15d4bd92-0a81-416c-8e63-5669d5ef03f9 2015-10-26 16:49:57.473 UTC 9fe5ee5e-e9b2-4fe6-92cc-4e2fff8b3cae 2015-10-25 19:18:24.873 UTC 9cce5295-5f15-40db-bee5-2adf14e2ebed 2015-10-25 18:59:05.397 UTC 531b7882-a878-4075-8323-4618545b678c 2016-03-25 20:37:57.117 UTC a52295f1-3684-43b6-b36d-3d764e00e3f5 2015-10-25 19:17:09.72 UTC 08b3a7ac-8bd2-4625-a582-5a21fac67998 2015-10-25 18:49:29.706 UTC Workflow20datafile_reference00outgrno00jobId0jobStatus0outfile0outtreefile0report0fullPath_outfile0fullPath_treefile0getResultsparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_distance_matrix.fneighbor?wsdl getResults net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclearparameters0net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_distance_matrix.fneighbor?wsdl clear net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_fneighbor_local_outputinput0jobId00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false jobId 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="runResponse" name="parameters" qname="{http://soaplab.org/typedws}runResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="runResponse&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResults" name="parameters" qname="{http://soaplab.org/typedws}getResults"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="getResultsRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResults_outputinput0outfile00outtreefile00report00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false report 0 'text/plain' 0 detailed_status 0 'text/plain' 0 outfile 0 'text/plain' 0 outfile_url 0 'text/plain' 0 outtreefile 0 'text/plain' 0 outtreefile_url 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getResultsResponse" name="parameters" qname="{http://soaplab.org/fneighbor}getResultsResponse"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="report" qname="appResults&gt;report" /><s:basetype optional="true" unbounded="false" typename="long" name="detailed_status" qname="appResults&gt;detailed_status" /><s:basetype optional="true" unbounded="false" typename="string" name="outfile" qname="appResults&gt;outfile" /><s:basetype optional="true" unbounded="false" typename="string" name="outfile_url" qname="appResults&gt;outfile_url" /><s:basetype optional="true" unbounded="false" typename="string" name="outtreefile" qname="appResults&gt;outtreefile" /><s:basetype optional="true" unbounded="false" typename="string" name="outtreefile_url" qname="appResults&gt;outtreefile_url" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclear_inputjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/xml' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="clear" name="parameters" qname="{http://soaplab.org/typedws}clear"><s:elements><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="clearRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeclear_jobIdjobId0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity jobId 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="jobId" name="jobId" qname="clearRequest&gt;jobId"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="jobId" qname="jobId&gt;jobId" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetStatusjobId0jobStatus00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.5</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>jobStatus</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + jobStatus.equals("RUNNING"); if ("true".matches(loop)) { Thread.sleep(2000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGETFILEPATHJobId0fullPath_outfile00fullPath_treefile00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerunparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://bioservices.sci.psu.ac.th/soaplab2/typed/services/phylogeny_distance_matrix.fneighbor?wsdl run net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_inputoutgrno0dafafile_ref0auto0output00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity dafafile_ref 0 'text/plain' false outgrno 0 'text/plain' false matrixtype 0 'text/plain' false treetype 0 'text/plain' false jumble 0 'text/plain' false seed 0 'text/plain' false replicates 0 'text/plain' false trout 0 'text/plain' false printdata 0 'text/plain' false auto 0 'text/plain' false progress 0 'text/plain' false treeprint 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="run" name="parameters" qname="{http://soaplab.org/fneighbor}run"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="dafafile_ref" qname="appInputs&gt;dafafile_ref" /><s:basetype optional="true" unbounded="false" typename="long" name="outgrno" qname="appInputs&gt;outgrno" /><s:basetype optional="true" unbounded="false" typename="string" name="matrixtype" qname="appInputs&gt;matrixtype" /><s:basetype optional="true" unbounded="false" typename="string" name="treetype" qname="appInputs&gt;treetype" /><s:basetype optional="true" unbounded="false" typename="boolean" name="jumble" qname="appInputs&gt;jumble" /><s:basetype optional="true" unbounded="false" typename="long" name="seed" qname="appInputs&gt;seed" /><s:basetype optional="true" unbounded="false" typename="boolean" name="replicates" qname="appInputs&gt;replicates" /><s:basetype optional="true" unbounded="false" typename="boolean" name="trout" qname="appInputs&gt;trout" /><s:basetype optional="true" unbounded="false" typename="boolean" name="printdata" qname="appInputs&gt;printdata" /><s:basetype optional="true" unbounded="false" typename="boolean" name="auto" qname="appInputs&gt;auto" /><s:basetype optional="true" unbounded="false" typename="boolean" name="progress" qname="appInputs&gt;progress" /><s:basetype optional="true" unbounded="false" typename="boolean" name="treeprint" qname="appInputs&gt;treeprint" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeauto_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetResultsparametersgetResults_inputoutputclearparametersclear_inputoutputrun_fneighbor_local_outputinputrunparametersgetResults_inputjobIdgetResults_jobIdoutputgetResults_jobIdjobIdrun_fneighbor_local_outputjobIdgetResults_outputinputgetResultsparametersclear_inputjobIdclear_jobIdoutputclear_jobIdjobIdrun_fneighbor_local_outputjobIdgetStatusjobIdrun_fneighbor_local_outputjobIdGETFILEPATHJobIdrun_fneighbor_local_outputjobIdrunparametersrun_inputoutputrun_inputoutgrnooutgrnorun_inputdafafile_refdatafile_referencerun_inputautoauto_valuevaluejobIdrun_fneighbor_local_outputjobIdjobStatusgetStatusjobStatusoutfilegetResults_outputoutfileouttreefilegetResults_outputouttreefilereportgetResults_outputreportfullPath_outfileGETFILEPATHfullPath_outfilefullPath_treefileGETFILEPATHfullPath_treefile f4139a76-0b02-4789-ade8-0bb2ce23041a 2015-10-16 17:23:40.900 UTC 0096fb26-cbd2-4fcf-a533-ab0645a19bf1 2015-10-13 10:58:05.783 UTC dee66356-aaec-4f33-99f5-2398d8498a08 2015-10-17 05:34:37.323 UTC 32042595-6173-4f3f-87ed-5e028445b9f8 2015-10-13 10:59:23.147 UTC 4b10d549-fc54-4ae5-8530-ac10721e681f 2015-11-02 16:15:10.774 UTC 315d3a48-4e21-4305-9d0b-f234a1c538ca 2015-10-16 17:26:09.656 UTC 7ffba865-1282-4d9f-81b8-b54eac3c9e78 2015-10-17 05:36:01.758 UTC 5931cc21-96b8-49b6-9a33-eb2297f58164 2015-11-02 16:21:00.681 UTC 93f2f627-9921-4698-8b48-798ab1912fd9 2015-11-02 16:16:51.377 UTC Workflow14sequence00output_pim0SimilarityScore0jobId0status0algorithm0CLUSTALO_PIMstype0sequence0output00jobId00status00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMSA_SIMILARITYpimDirectData0MSASimScores00algorithm00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokestype_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity dna net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCLUSTALO_PIMstypestype_valuevalueCLUSTALO_PIMsequencesequenceMSA_SIMILARITYpimDirectDataCLUSTALO_PIMoutputoutput_pimCLUSTALO_PIMoutputSimilarityScoreMSA_SIMILARITYMSASimScoresjobIdCLUSTALO_PIMjobIdstatusCLUSTALO_PIMstatusalgorithmMSA_SIMILARITYalgorithm c1dd0dc0-9547-472a-aa85-2b3340352019 2016-03-25 20:32:53.35 UTC a8402ac3-0dfa-4ad9-9120-0f72f85a5e91 2016-03-25 20:38:24.691 UTC e640d779-73b9-46d7-bdb3-ebdaf5ac1f23 2015-11-17 07:39:09.487 UTC 050555f4-3d89-477f-91b1-bdccc94e3a3f 2015-10-26 17:02:06.475 UTC 08a75006-50ad-46fa-b32c-09bb1bad6d1c 2016-03-25 20:35:26.71 UTC 29899649-897b-40ac-9792-173fb61aa8a3 2015-10-26 16:55:46.660 UTC