KEGG_Get_PW_for_metcompound_id00 cpd:C00062 2013-08-27 07:44:47.301 UTC The input for the workflow is a Kegg compound ID. 2013-08-27 07:44:35.886 UTC output_pathways2 map00220 2016-06-21 18:05:48.953 UTC Output KEGG pathway identifiers 2016-06-21 18:05:55.44 UTC get_compound_infoquery0responseBody00 Use the KEGG API to query the KEGG database for compound information. 2016-06-21 18:09:20.337 UTC net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity GET http://rest.kegg.jp/get/{query} text/xml application/xml String false false false false true query java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeextract_pathway_from_compounds_filein10out111 Shell script to extract pathways from compounds file. 2016-06-21 18:06:38.571 UTC net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity in1 0 text/plain java.lang.String true out1 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionregex0string0split11 Split the input list on the newline character (this can be changed in the text constant input value). 2016-06-21 18:08:38.983 UTC net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex_valuevalue00 Input constant for split method, can be changed (default is newline character \n). 2016-06-21 18:08:06.899 UTC net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity \n net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_compound_infoquerySplit_string_into_string_list_by_regular_expressionsplitextract_pathway_from_compounds_filein1get_compound_inforesponseBodySplit_string_into_string_list_by_regular_expressionregexregex_valuevalueSplit_string_into_string_list_by_regular_expressionstringcompound_idoutput_pathwaysextract_pathway_from_compounds_fileout1 The purpose of the workflow is to retrieve all the pathways that the input metabolite(s) participates in. 2016-06-21 18:01:48.884 UTC 3cd53121-1fa8-4020-ad46-f0c317d68aae 2012-12-22 20:47:35.425 UTC d0ac1e2a-370c-44df-84ba-aed583142af0 2012-12-22 21:47:08.709 UTC a63c4b39-4f71-41db-90fd-edc43272b0c6 2012-12-15 16:24:52.943 UTC 1b0ebf11-90ce-4cd2-ab1a-a11ca6caed35 2012-12-22 20:39:19.311 UTC c2aa1341-e9f6-4590-8225-0296bd3e204f 2012-12-22 21:40:32.930 UTC 775080e6-807a-42d8-aa98-bcb67fcd4aaf 2016-06-21 18:03:38.568 UTC 98255903-88a7-40f1-b3aa-ed4666058c0a 2012-12-15 16:14:09.617 UTC 9e102b1a-a52d-4bae-800e-55fcefd1ef51 2013-08-27 07:44:11.845 UTC d1f512d7-dde7-4934-b2ab-caadd515d95c 2012-12-15 16:05:58.247 UTC c907cf32-57fc-41e6-bacb-5641db1aed37 2012-12-15 16:03:56.253 UTC e76de9ba-440f-4327-a6e9-8375a7bd5038 2016-05-13 13:51:12.864 UTC 80154e7e-cf72-4298-af09-1cd87268c7f1 2016-05-13 14:11:26.6 UTC 1a9b328b-9006-4e5b-9a37-f3af72d7ed30 2016-06-21 18:09:24.748 UTC adfc00cb-33a9-4872-b008-bd652848acd8 2012-12-22 21:41:47.259 UTC 97180b6a-a395-49b8-ac7f-5fd594d1816a 2016-06-21 18:04:39.10 UTC 2cc5ab48-4718-455d-bfb8-05851223513b 2016-05-13 14:13:00.318 UTC 9a858e7a-e6e3-490f-9299-6718c60dff60 2016-05-13 12:50:23.378 UTC 1a7028d1-0f3d-4df3-9591-aae0159a6a00 2012-12-22 22:52:33.261 UTC b7580bfc-82cf-4250-8f21-0f47a1c9dd54 2016-05-13 13:08:30.688 UTC 411de21b-b8a2-46a0-86ef-51135edd9629 2016-05-13 14:15:00.219 UTC 033db610-0123-48e3-a1ce-7634718b3748 2012-12-15 16:02:39.732 UTC 989fb908-844e-42f8-bcda-9737d915ff75 2012-12-22 21:17:26.736 UTC KEGG:Get PW for met 2016-05-13 12:59:31.397 UTC 0da82383-cc09-4239-96b7-a06ae3eaff7a 2012-12-21 10:51:12.261 UTC 30c40920-a7e2-4ae7-bdbf-a4459a19dd3b 2016-05-13 13:00:03.980 UTC f7755d5f-31f2-43e1-a19b-772beba4fab0 2012-12-22 23:00:04.31 UTC be53b4c9-9d6f-4e6c-8034-01fa9c35a67e 2012-12-22 22:38:51.191 UTC 3219df53-6b7b-4ffa-bada-03c7dc39d05e 2012-12-22 20:42:47.198 UTC 2000d4a6-8d31-4dbc-88d7-7016059000a1 2012-12-30 00:11:23.523 UTC 1eb2a797-aefd-4a66-a3a9-a4c8d5671fec 2012-12-22 20:56:41.599 UTC 2c2eff30-2c85-4bfd-86c1-31f4538a8987 2012-12-22 19:36:49.503 UTC Harish Dharuri Kristina Hettne 2016-05-13 12:58:31.992 UTC 829592b2-ae72-4200-8ff9-705713fcdb72 2012-12-22 21:23:16.630 UTC 65806c42-8b1a-4bc4-a5a1-b11f07c96c14 2016-05-13 14:53:35.223 UTC 8039ece8-4164-4ac1-9efc-94a5925ceb2d 2016-05-13 13:04:21.937 UTC 1f89460d-ace8-499a-af35-7283d543d883 2016-05-13 13:55:26.764 UTC 593173b7-8cfd-4630-a3bb-40c77914bebc 2012-12-22 20:18:10.652 UTC e89754de-99a2-4c07-bc08-034f108c5f09 2016-05-13 12:45:54.200 UTC 583cf787-e6e9-488e-b4a8-7ea5af7a2e34 2016-05-13 14:33:19.256 UTC 0a986a85-b8ca-404d-a88a-e85d04ec1e11 2012-12-22 22:39:00.247 UTC d1213737-177e-4917-8301-5e7629176746 2012-12-22 20:21:01.567 UTC c87faa19-2c0b-46c5-8027-4fd59b3a478b 2012-12-15 16:23:40.277 UTC 419500ab-8da9-4414-b414-390173b024ea 2013-08-27 07:45:23.618 UTC cbce7dd0-4c4f-4201-beaf-5df74c54cd49 2012-12-22 21:53:00.72 UTC 7143254d-f87f-4f41-9098-8bbe2e6e89c4 2012-12-22 20:59:21.61 UTC dfdb6b36-d3e4-4a8a-945f-80fa68976ab0 2012-12-15 15:54:17.687 UTC e0f64644-65c9-4cef-9632-6d88e875ed33 2016-05-13 13:10:04.66 UTC 16b97b36-51be-4803-a5e7-11dec8e9b1fc 2012-12-20 16:46:20.472 UTC c26e566e-7af1-470c-b830-63a06a5e785f 2012-12-21 14:20:52.948 UTC c418227b-9ec5-4b16-a63a-67aa5fab8f0f 2012-12-22 21:32:41.242 UTC b76b8fed-c289-48ce-891a-2b41f1f302f7 2012-12-22 20:35:01.208 UTC