Finding gene difference in pathways between two organisme

None

import java.util.*;

String[] split = in1.split("\\n");

ArrayList out1 = new ArrayList();

for (String x : split) {
	String[] line = x.split("\\t");
	out1.add(line[1]);
}
import java.util.*;

String[] split = in1.split("\\n");

ArrayList out1 = new ArrayList();

for (String x : split) {
	String[] line = x.split("\\t");
	out1.add(line[1]);
}
List split = new ArrayList();
if (!string.equals("")) {
	String regexString = "\n";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = string.split(regexString);
	for (int i = 0; i < result.length; i++) {
		split.add(result[i]);
	}
}

List split = new ArrayList();
if (!string.equals("")) {
	String regexString = "\n";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = string.split(regexString);
	for (int i = 0; i < result.length; i++) {
		split.add(result[i]);
	}
}

import java.util.*;

String[] split = in1.split("\\n");

ArrayList out1 = new ArrayList();

for (String x : split) {
	String[] line = x.split("\\t");
	out1.add(line[1]);
}
import java.util.*;

String[] split = in1.split("\\n");

ArrayList out1 = new ArrayList();

for (String x : split) {
	String[] line = x.split("\\t");
	out1.add(line[1]);
}
List split = new ArrayList();
if (!string.equals("")) {
	String regexString = "\n";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = string.split(regexString);
	for (int i = 0; i < result.length; i++) {
		split.add(result[i]);
	}
}

String seperatorString = "\n";
if (seperator != void) {
	seperatorString = seperator;
}
StringBuffer sb = new StringBuffer();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
	String item = (String) i.next();
	sb.append(item);
	if (i.hasNext()) {
		sb.append(seperatorString);
	}
}
concatenated = sb.toString();

String seperatorString = "\n";
if (seperator != void) {
	seperatorString = seperator;
}
StringBuffer sb = new StringBuffer();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
	String item = (String) i.next();
	sb.append(item);
	if (i.hasNext()) {
		sb.append(seperatorString);
	}
}
concatenated = sb.toString();

String seperatorString = "\n";
if (seperator != void) {
	seperatorString = seperator;
}
StringBuffer sb = new StringBuffer();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
	String item = (String) i.next();
	sb.append(item);
	if (i.hasNext()) {
		sb.append(seperatorString);
	}
}
concatenated = sb.toString();

String seperatorString = "\n";
if (seperator != void) {
	seperatorString = seperator;
}
StringBuffer sb = new StringBuffer();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
	String item = (String) i.next();
	sb.append(item);
	if (i.hasNext()) {
		sb.append(seperatorString);
	}
}
concatenated = sb.toString();

Name	Description
Pathways	Pathays input are the ko Pathway numbers from the Kegg database.
org1	kegg organimse name abbreviation
org2	kegg organimse name abbreviation

Name	Type	Description
REST_Pathways_to_Genes	rest
REST_Pathways_to_genes_2	rest
Filter_genes	beanshell	Script import java.util.*; String[] split = in1.split("\\n"); ArrayList out1 = new ArrayList(); for (String x : split) { String[] line = x.split("\\t"); out1.add(line[1]); }
REST_Kegg_GetKoGenes	rest
Filter_genes_2	beanshell	Script import java.util.*; String[] split = in1.split("\\n"); ArrayList out1 = new ArrayList(); for (String x : split) { String[] line = x.split("\\t"); out1.add(line[1]); }
Split_enter_2	localworker	Script List split = new ArrayList(); if (!string.equals("")) { String regexString = "\n"; if (regex != void) { regexString = regex; } String[] result = string.split(regexString); for (int i = 0; i < result.length; i++) { split.add(result[i]); } }
Split_enter_3	localworker	Script List split = new ArrayList(); if (!string.equals("")) { String regexString = "\n"; if (regex != void) { regexString = regex; } String[] result = string.split(regexString); for (int i = 0; i < result.length; i++) { split.add(result[i]); } }
REST_Kegg_getKoGenes	rest
split_ko	beanshell	Script import java.util.*; String[] split = in1.split("\\n"); ArrayList out1 = new ArrayList(); for (String x : split) { String[] line = x.split("\\t"); out1.add(line[1]); }
split_ko_2	beanshell	Script import java.util.*; String[] split = in1.split("\\n"); ArrayList out1 = new ArrayList(); for (String x : split) { String[] line = x.split("\\t"); out1.add(line[1]); }
Split_enter	localworker	Script List split = new ArrayList(); if (!string.equals("")) { String regexString = "\n"; if (regex != void) { regexString = regex; } String[] result = string.split(regexString); for (int i = 0; i < result.length; i++) { split.add(result[i]); } }
Merge_String_List_to_a_String	localworker	Script String seperatorString = "\n"; if (seperator != void) { seperatorString = seperator; } StringBuffer sb = new StringBuffer(); for (Iterator i = stringlist.iterator(); i.hasNext();) { String item = (String) i.next(); sb.append(item); if (i.hasNext()) { sb.append(seperatorString); } } concatenated = sb.toString();
Merge_String_List_to_a_String_2	localworker	Script String seperatorString = "\n"; if (seperator != void) { seperatorString = seperator; } StringBuffer sb = new StringBuffer(); for (Iterator i = stringlist.iterator(); i.hasNext();) { String item = (String) i.next(); sb.append(item); if (i.hasNext()) { sb.append(seperatorString); } } concatenated = sb.toString();
Merge_String_List_to_a_String_3	localworker	Script String seperatorString = "\n"; if (seperator != void) { seperatorString = seperator; } StringBuffer sb = new StringBuffer(); for (Iterator i = stringlist.iterator(); i.hasNext();) { String item = (String) i.next(); sb.append(item); if (i.hasNext()) { sb.append(seperatorString); } } concatenated = sb.toString();
Merge_String_List_to_a_String_4	localworker	Script String seperatorString = "\n"; if (seperator != void) { seperatorString = seperator; } StringBuffer sb = new StringBuffer(); for (Iterator i = stringlist.iterator(); i.hasNext();) { String item = (String) i.next(); sb.append(item); if (i.hasNext()) { sb.append(seperatorString); } } concatenated = sb.toString();

Name	Description
hsa
mmu

Source	Sink
Split_enter:split	REST_Pathways_to_Genes:id
org1	REST_Pathways_to_Genes:org
Split_enter:split	REST_Pathways_to_genes_2:id
org2	REST_Pathways_to_genes_2:org
REST_Pathways_to_Genes:responseBody	Filter_genes:in1
Split_enter_2:split	REST_Kegg_GetKoGenes:id
REST_Pathways_to_genes_2:responseBody	Filter_genes_2:in1
Filter_genes:out1	Split_enter_2:string
Filter_genes_2:out1	Split_enter_3:string
Split_enter_3:split	REST_Kegg_getKoGenes:id
REST_Kegg_GetKoGenes:responseBody	split_ko:in1
REST_Kegg_getKoGenes:responseBody	split_ko_2:in1
Pathways	Split_enter:string
split_ko:out1	Merge_String_List_to_a_String:stringlist
split_ko_2:out1	Merge_String_List_to_a_String_2:stringlist
Merge_String_List_to_a_String:concatenated	Merge_String_List_to_a_String_3:stringlist
Merge_String_List_to_a_String_2:concatenated	Merge_String_List_to_a_String_4:stringlist
Merge_String_List_to_a_String_4:concatenated	hsa
Merge_String_List_to_a_String_3:concatenated	mmu

Finding gene difference in pathways between two organisme

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Name	Inputs	Outputs
Filter_genes	in1	out1
Filter_genes_2	in1	out1
split_ko	in1	out1
split_ko_2	in1	out1