BLASTP with simplified results returned

Created: 2007-10-03 18:36:28

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Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers.

N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.

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Workflow Components

Inputs (4)

Name	Description
database
program
query
OldBlastResult

Processors (4)

Name	Type	Description
chromosome_filter	stringconstant
species_filter	stringconstant
blast_ddbj	arbitrarywsdl	Execute Blast
blastfilecomparer	soaplabwsdl	Compares a new BLAST file output with an older BLAST file output to check for new hits

Beanshells (0)

Outputs (2)

Name	Description
blast_output
compared_output

Links (9)

Source	Sink
OldBlastResult	blastfilecomparer:oldRefFile_direct_data
blast_ddbj:Result	blastfilecomparer:blastResult_direct_data
database	blast_ddbj:database
program	blast_ddbj:program
query	blast_ddbj:query
chromosome_filter:value	blastfilecomparer:chromo
species_filter:value	blastfilecomparer:species
blast_ddbj:Result	blast_output
blastfilecomparer:output	compared_output

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Information Workflow Type

Taverna 1

Information Uploader

Antoon Goderis

Information License

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Information Version 2 (latest) (of 2)

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Information Statistics

1776 viewings

2232 downloads

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Version History

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BLASTP with simplified results returned

Created by Antoon Goderis on Wednesday 03 October 2007 18:36:28 (UTC)
BLASTP with simplified results returned

Created by Antoon Goderis on Wednesday 03 October 2007 18:36:28 (UTC)

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Taverna 1

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Paul Fisher

BLASTP with simplified results returned (2)

Download

Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output. Example input for this service are given below. query: >MySequence MATDDSIIVLDDDDEDEAAAQPGPSNLPPNPASTGPGPGLSQQATGLSEPRVDGGSS NSGSRKCYKLDNEKLFEEFLELCKTETSDHPEVVPFLHKLQQRAQSV...

Created: 2007-10-03 | Last updated: 2009-12-03

Taverna 1

Uploader

Paul Fisher

BLAST using DDBJ service (2)

Download

Perform a sequence similarity search using the BLAST algorithm through the DDBJ web service. Example input for this service are given below. query: >MySequence MATDDSIIVLDDDDEDEAAAQPGPSNLPPNPASTGPGPGLSQQATGLSEPRVDGGSS NSGSRKCYKLDNEKLFEEFLELCKTETSDHPEVVPFLHKLQQRAQSVFLASAEFCNIL SRVLARSRKRPAKIYVYINELCTVLKAHSIKKKLNLAPAASTTSEASGPNPPTEPPSDLT NTENTASEASRTRGSRRQIQRLEQLLALYVAEIRRLQEKELDLSELDDPDSSYLQEAR LKRKLIRLFGRLCELKDCSSLTGRVIEQRIPYRGTRYPEVNRRIERLINKPGLDTFPDY GDVLRAVEKAATRHSLGLP...

Created: 2007-10-03 | Last updated: 2009-12-03