Connecting to Europe PMC

Created: 2015-12-04 12:28:38

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This very simple workflow connects to Europe PMC using the searchPublications Web Service.

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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (1)

Name	Description
query	A Europe PMC search query.

Processors (5)

Name	Type	Description
searchPublications	wsdl	Wsdl http://www.ebi.ac.uk/europepmc/webservices/soap?wsdl Wsdl Operation searchPublications
searchPublications_input	xmlsplitter
searchPublications_output	xmlsplitter
searchPublications_return	xmlsplitter
records_to_retrieve	stringconstant	Value 100

Beanshells (0)

Outputs (1)

Name	Description
results

Datalinks (6)

Source	Sink
searchPublications_input:output	searchPublications:parameters
query	searchPublications_input:queryString
records_to_retrieve:value	searchPublications_input:pageSize
searchPublications:parameters	searchPublications_output:input
searchPublications_output:return	searchPublications_return:input
searchPublications_return:resultList	results

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Magnus Palmblad

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Magnus Palmblad

Information Attributions (0)

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None

Information Tags (0)

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Information Shared with Groups (1)

Bibliometrics and Scientometrics

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Information Attributed By (0)

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Information Favourited By (0)

No one

Information Statistics

1625 viewings

1041 downloads

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Citations (0)

None

Version History

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Connecting to Europe PMC

Created by Magnus Palmblad on Friday 04 December 2015 12:28:36 (UTC)

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Online PubMed author search and geographic... (2)

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This workflow retrieves bibliographic data for a single author using the PMC Europe RESTful Web service and visualizes the geographic distribution of this author's and their co-authors' geographic distribution using the rworldmap package. This is version 2.0 of this workflow, incorporating changes to the Web service allowing up to 1,000 records to be retrieved at once, using the pageSize parameter.

Created: 2015-08-19 | Last updated: 2015-09-07

Credits: Magnus Palmblad Arzu Tugce Guler

Taverna 2

Uploader

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Get article titles from Europe PMC for sin... (2)

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This small workflow demonstrates how to connect to the new (August 2015) version of Europe PMC (http://europepmc.org/RestfulWebService). Changes from previous versions include the addition of a pageSize parameter, allowing the client to request up to 1,000 records at once. If this would still not be sufficient, the offSet paremeter can be used to retrieve data in chunks of 1,000 records and the Flatten List service used to concatenate the results.

Created: 2015-09-07 | Last updated: 2015-09-10

Credits: Magnus Palmblad

Connecting to Europe PMC

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Workflow Components

Wsdl

Wsdl Operation

Value

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Other workflows that use similar services (15)