Get ontology parents

Created: 2015-11-16 09:56:19 Last updated: 2016-04-26 16:08:03

Download Workflow

Retrieves the ontology parents of an entity including the relationship type, using the ChEBI identifier.

Preview

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://myexperiment.org/workflows/4766/download?version=1
[ More Info Expand ]

Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (1)

Name	Description
chebiId	A compound represented by its chebi identifier

Processors (6)

Name	Type	Description
getOntologyParents	wsdl	Wsdl http://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl Wsdl Operation getOntologyParents
getOntologyParents_input	xmlsplitter
getOntologyParents_result	xmlsplitter
XPath_Service	xpath	Xpath Expression /default:return/default:ListElement/default:chebiId
XPath_Service_2	xpath	Xpath Expression /default:return/default:ListElement/default:chebiName
XPath_Service_3	xpath	Xpath Expression /default:return/default:ListElement/default:type

Beanshells (0)

Outputs (3)

Name	Description
id
name
type

Datalinks (9)

Source	Sink
getOntologyParents_input:output	getOntologyParents:parameters
chebiId	getOntologyParents_input:chebiId
getOntologyParents:result	getOntologyParents_result:input
getOntologyParents_result:return	XPath_Service:xml_text
getOntologyParents_result:return	XPath_Service_2:xml_text
getOntologyParents_result:return	XPath_Service_3:xml_text
XPath_Service:nodelist	id
XPath_Service_2:nodelist	name
XPath_Service_3:nodelist	type

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Kristina Hettne

Information License

All versions of this Workflow are licensed under:

Information Version 1 (earliest) (of 2)

Information Credits (1)

(People/Groups)

Kristina Hettne

Information Attributions (1)

(Workflows/Files)

Get ontology parents

Information Tags (5)

Uploader tags

Log in to add Tags

Information Shared with Groups (1)

BioSemantics

Information Featured In Packs (1)

Pathway analysis with WikiPathways

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

1938 viewings

1020 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

Get ontology parents

Created by Kristina Hettne on Monday 16 November 2015 09:56:17 (UTC)
Get ontology parents

Created by Kristina Hettne on Tuesday 26 April 2016 16:08:03 (UTC)

Revision comment:

The workflow now accepts a list of CHEBI identifiers and produces a flattend list.

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (6)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 2

Uploader

Peter Li

getLiteEntity (1)

Download

Retrieves a list of "lite" entities containing only the ChEBI ASCII name and ChEBI identifier. The input parameters are a search string and a search category. If the search category is null then it will search under all fields. The search string accepts the wildcard character "*" and also unicode characters. You can get maximum results upto 5000 entries at a time.

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: Peter Li

Taverna 2

Uploader

Peter Li

Get complete chebi entity (1)

Download

Returns informations for a given compound represented by its chebi identifier

Created: 2010-07-13 | Last updated: 2010-07-13

Credits: Peter Li

Get ontology parents

Preview

Run

Run this Workflow in the Taverna Workbench...

Workflow Components

Wsdl

Wsdl Operation

Xpath Expression

Xpath Expression

Xpath Expression

Reviews (0)

Comments (0)

Other workflows that use similar services (6)