ListAllWikiPathways

None

/ns1:listPathwaysResponse/ns1:pathways/ns2:url
/ns1:listPathwaysResponse/ns1:pathways/ns2:species
flatten(inputs, outputs, depth) {
	for (i = inputs.iterator(); i.hasNext();) {
	    element = i.next();
		if (element instanceof Collection && depth > 0) {
			flatten(element, outputs, depth - 1);
		} else {
			outputs.add(element);
		}
	}
}

outputlist = new ArrayList();

flatten(inputlist, outputlist, 1);
flatten(inputs, outputs, depth) {
	for (i = inputs.iterator(); i.hasNext();) {
	    element = i.next();
		if (element instanceof Collection && depth > 0) {
			flatten(element, outputs, depth - 1);
		} else {
			outputs.add(element);
		}
	}
}

outputlist = new ArrayList();

flatten(inputlist, outputlist, 1);
String seperatorString = "\n";
if (seperator != void) {
	seperatorString = seperator;
}
StringBuffer sb = new StringBuffer();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
	String item = (String) i.next();
	sb.append(item);
	if (i.hasNext()) {
		sb.append(seperatorString);
	}
}
concatenated = sb.toString();

String seperatorString = "\n";
if (seperator != void) {
	seperatorString = seperator;
}
StringBuffer sb = new StringBuffer();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
	String item = (String) i.next();
	sb.append(item);
	if (i.hasNext()) {
		sb.append(seperatorString);
	}
}
concatenated = sb.toString();

Name	Type	Description
List_all_WikiPathways	rest	This REST service uses the WikiPathways API to retrieve a list of all pathways currently in the database.
Parse_pathway_uris	xpath	Xpath Expression /ns1:listPathwaysResponse/ns1:pathways/ns2:url
Parse_species_annotation	xpath	Xpath Expression /ns1:listPathwaysResponse/ns1:pathways/ns2:species
Flatten_List	localworker	Script flatten(inputs, outputs, depth) { for (i = inputs.iterator(); i.hasNext();) { element = i.next(); if (element instanceof Collection && depth > 0) { flatten(element, outputs, depth - 1); } else { outputs.add(element); } } } outputlist = new ArrayList(); flatten(inputlist, outputlist, 1);
Flatten_List_2	localworker	Script flatten(inputs, outputs, depth) { for (i = inputs.iterator(); i.hasNext();) { element = i.next(); if (element instanceof Collection && depth > 0) { flatten(element, outputs, depth - 1); } else { outputs.add(element); } } } outputlist = new ArrayList(); flatten(inputlist, outputlist, 1);
Merge_String_List_to_a_String_2	localworker	Script String seperatorString = "\n"; if (seperator != void) { seperatorString = seperator; } StringBuffer sb = new StringBuffer(); for (Iterator i = stringlist.iterator(); i.hasNext();) { String item = (String) i.next(); sb.append(item); if (i.hasNext()) { sb.append(seperatorString); } } concatenated = sb.toString();
Merge_String_List_to_a_String_2_2	localworker	Script String seperatorString = "\n"; if (seperator != void) { seperatorString = seperator; } StringBuffer sb = new StringBuffer(); for (Iterator i = stringlist.iterator(); i.hasNext();) { String item = (String) i.next(); sb.append(item); if (i.hasNext()) { sb.append(seperatorString); } } concatenated = sb.toString();

Name	Description
pw_list	A list of pathways currently in the WikiPathways database
species_list	The species annotation for each pathway in the current WikiPathways database.

Source	Sink
List_all_WikiPathways:responseBody	Parse_pathway_uris:xml_text
List_all_WikiPathways:responseBody	Parse_species_annotation:xml_text
Parse_pathway_uris:nodelist	Flatten_List:inputlist
Parse_species_annotation:nodelist	Flatten_List_2:inputlist
Flatten_List:outputlist	Merge_String_List_to_a_String_2:stringlist
Flatten_List_2:outputlist	Merge_String_List_to_a_String_2_2:stringlist
Merge_String_List_to_a_String_2:concatenated	pw_list
Merge_String_List_to_a_String_2_2:concatenated	species_list

ListAllWikiPathways

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