Workflow1hsapiens_snp_som1hsapiens_snp1Genes1EntrzGenes1hsapiens_snp_somhsapiens_snp_som.ensembl_gene_filter0hsapiens_snp_som00net.sf.taverna.t2.activitiesbiomart-activity1.5net.sf.taverna.t2.activities.biomart.BiomartActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 2 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokehsapiens_gene_ensemblhsapiens_gene_ensembl.ensembl_gene_id10hsapiens_gene_ensembl.entrezgene10net.sf.taverna.t2.activitiesbiomart-activity1.5net.sf.taverna.t2.activities.biomart.BiomartActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokehsapiens_snphsapiens_snp.ensembl_gene_filter0hsapiens_snp00net.sf.taverna.t2.activitiesbiomart-activity1.5net.sf.taverna.t2.activities.biomart.BiomartActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 5 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeWorkflow18entrz1net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokehsapiens_snp_somhsapiens_snp_som.ensembl_gene_filterhsapiens_gene_ensemblhsapiens_gene_ensembl.ensembl_gene_idhsapiens_snphsapiens_snp.ensembl_gene_filterhsapiens_gene_ensemblhsapiens_gene_ensembl.ensembl_gene_idWorkflow18entrzhsapiens_gene_ensemblhsapiens_gene_ensembl.entrezgenehsapiens_snp_somhsapiens_snp_somhsapiens_snp_somhsapiens_snphsapiens_snphsapiens_snpGeneshsapiens_gene_ensemblhsapiens_gene_ensembl.ensembl_gene_idEntrzGeneshsapiens_gene_ensemblhsapiens_gene_ensembl.entrezgene bd1d228f-9b64-4f5a-a258-06354f30dee2 2015-06-01 14:05:16.276 UTC 00a0ea23-3930-4150-aff5-18da6f0d3c95 2015-04-10 11:40:34.139 UTC efe3faff-748e-43a8-bba4-2c56697c8624 2015-06-01 12:57:24.658 UTC 961ffe18-d477-494a-8c68-84f79e1e72cf 2015-06-07 15:19:58.706 UTC 16c413f9-60f1-428e-9520-39cea051023d 2015-04-10 11:41:06.764 UTC 7eb58725-6ca1-4334-8531-87fd19cc8e5c 2015-04-10 11:49:10.14 UTC 2e35e358-8721-4c98-8138-9f145fedce26 2015-04-10 11:39:14.35 UTC 7981c08d-84a2-47b0-88f4-c15b1c59b99a 2015-06-02 14:44:59.764 UTC 111c3a94-99c5-48a5-b3fc-a22b2f925ce6 2015-05-25 11:57:58.230 UTC f38fb90b-73a7-4e29-9ba3-15631b6d81f6 2015-06-05 12:32:59.142 UTC f60448d8-e29f-42ec-ab61-cf5a8cfbf208 2015-03-24 09:42:37.750 UTC b65db26f-c711-4e76-86c0-0fbe70abe708 2015-03-24 09:43:52.489 UTC 2edd066e-7dab-4582-b9be-a1cb5b092c87 2015-04-10 11:50:37.64 UTC 923e333f-8b6e-47bb-8ac3-b4d7fde7c9d2 2015-03-24 09:47:23.431 UTC Workflow18entrz11out0status0responseBody0FunctionalClusterDavids1actualURL00status00responseBody00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFunctionalClusterDavidsentrzoutFunctionalClusterDavactualURLstatusFunctionalClusterDavstatusresponseBodyFunctionalClusterDavresponseBody 048255ff-c88e-4c63-ab37-59ea466edfaa 2015-04-27 14:31:37.702 UTC 6d4fea65-5f95-49c8-8ae3-7b1aa79a2548 2015-04-27 14:29:23.803 UTC a9825a81-3a21-4937-ae5e-080152ebffbd 2014-12-16 16:59:38.162 UTC bfdf1458-d67b-43a2-9e16-d46282ca9829 2015-06-02 14:41:29.758 UTC 2d0d732d-444e-4102-832d-f055a07679eb 2014-12-16 17:03:57.43 UTC 109a81e7-e019-4ee0-a1d7-53986b97eaf5 2014-12-20 19:10:14.233 UTC abd95f87-27ad-4019-8b6c-9c326dfd1088 2015-02-11 01:57:09.661 UTC 2ba95dce-a894-4e46-b3da-9221f29b878e 2014-12-16 16:59:43.782 UTC 8ca7f94e-1705-42ba-9b44-2e49c5e532ca 2015-06-02 14:44:23.520 UTC FunctionalClusterDavids11responseBody0status0actualURL0REST_Serviceannot0ids0responseBody00status00actualURL00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity GET http://david.abcc.ncifcrf.gov/api.jsp?type=ENTREZ_GENE_ID&ids={ids}&tool=term2term&annot={annot} text/html application/xml String false false true false true annot java.lang.String ids java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeText_constantvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity GOTERM_BP_FAT,GOTERM_CC_FAT,GOTERM_MF_FAT,INTERPRO,PIR_SUPERFAMILY,SMART,BBID, BIOCARTA,KEGG_PATHWAY,COG_ONTOLOGY,SP_PIR_KEYWORDS,UP_SEQ_FEATURE,GENETIC_ASSOCIATION_DB_DISEASE, OMIM_DISEASE net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeOpen_web_browser_at_a_URLurl0net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity url 0 text/plain java.lang.String true workflow net.sourceforge.taverna.scuflworkers.net.BrowseUrl net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringseperator0stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeseperator_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity , net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeREST_ServiceannotText_constantvalueREST_ServiceidsMerge_String_List_to_a_StringconcatenatedOpen_web_browser_at_a_URLurlREST_ServiceactualURLMerge_String_List_to_a_Stringseperatorseperator_valuevalueMerge_String_List_to_a_StringstringlistidsresponseBodyREST_ServiceresponseBodystatusREST_ServicestatusactualURLREST_ServiceactualURL 169ca213-ad1f-4c7f-94b0-618e73312822 2014-08-26 13:21:20.343 UTC 2ef6ecfb-cd8d-457f-bb23-1bc02e61552b 2014-09-01 10:05:11.709 UTC 12d80e58-9ada-412c-8ef0-219019e5120b 2014-08-26 13:23:02.997 UTC 6101d933-e805-4693-b771-f4ec38e128a2 2014-09-05 07:38:32.323 UTC 65171507-6211-4b52-8b93-672e0d1752bf 2014-09-03 08:50:33.741 UTC 995c48fd-bc97-40a6-88bb-a3237e5dfe62 2014-09-03 08:49:07.817 UTC This workflow takes a list of Entrez Gene IDs as input and submits them to the DAVID REST API for functional clustering using OG annotaiton, biological pathways and disease associations. Used for analysing a set of genes (i.e. those differentially expressed for a particular disease condition). 2014-09-05 07:38:32.119 UTC ca607a23-5ec7-44e7-b2b9-f18c1470c601 2014-08-26 13:23:40.975 UTC 38a3c045-ae26-4b83-8974-a429455574de 2014-09-03 08:52:04.380 UTC 40f3323c-b600-46d3-b155-46af2abe5901 2014-09-03 08:51:14.327 UTC 583d017b-e489-4676-af75-cc561423bd0b 2014-09-03 08:32:17.20 UTC a75cda50-88d7-4718-b0b6-a4c278d4a9fc 2014-08-26 13:20:02.383 UTC Katy Wolstencroft 2014-09-05 07:36:18.479 UTC 881727be-4039-4ade-9327-a23ce5f79411 2014-09-01 12:28:14.520 UTC FunctionalClusterDavid 2014-09-05 07:36:31.378 UTC 10619c9e-4f09-4081-b110-bbf5774e9f70 2014-09-03 08:44:37.459 UTC 035fb463-4560-4ee1-bcc5-d47f1ae44393 2014-08-26 13:21:53.709 UTC