Galaxy workflow for the identification of candidate genes clusters with three genes
Created: 2015-03-17 13:55:19
Preview
Import
Not currently available.
Workflow Components
Inputs (4)
Name |
Description |
Nucleotide Reference Database |
|
Protein in FASTA format |
|
Protein in FASTA format |
|
Protein in FASTA format |
|
Steps (28)
Name |
Tool |
Description |
Input dataset |
None |
|
Input dataset |
None |
|
Cut |
Cut1 |
|
Compute |
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0 |
|
Compute |
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0 |
|
Compute |
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0 |
|
Compute |
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0 |
|
Compute |
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0 |
|
Compute |
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0 |
|
Cut |
Cut1 |
|
Compute |
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0 |
|
Compute |
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0 |
|
Input dataset |
None |
|
Compute |
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0 |
|
Compute |
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0 |
|
Cut |
Cut1 |
|
Cut |
Cut1 |
|
Intersect |
toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/0.0.1 |
|
Intersect |
toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/1.0.0 |
|
Sort |
sort1 |
|
Group |
Grouping1 |
|
Input dataset |
None |
|
NCBI BLAST+ makeblastdb |
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.01 |
|
NCBI BLAST+ tblastn |
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.1.01 |
|
NCBI BLAST+ tblastn |
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.1.01 |
|
NCBI BLAST+ tblastn |
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.1.01 |
|
Cut |
Cut1 |
|
Cut |
Cut1 |
|
Outputs (24)
Name |
Type |
out_file1 |
tabular |
out_file1 |
input |
out_file1 |
input |
out_file1 |
input |
out_file1 |
input |
out_file1 |
input |
out_file1 |
input |
out_file1 |
tabular |
out_file1 |
input |
out_file1 |
input |
out_file1 |
input |
out_file1 |
input |
out_file1 |
tabular |
out_file1 |
tabular |
output |
input |
output |
input |
out_file1 |
input |
out_file1 |
tabular |
outfile |
data |
output1 |
tabular |
output1 |
tabular |
output1 |
tabular |
out_file1 |
tabular |
out_file1 |
tabular |
Uploader
License
All versions of this Workflow are
licensed under:
Version 1
(of 1)
Credits (1)
(People/Groups)
Attributions (0)
(Workflows/Files)
None
Shared with Groups (0)
None
Featured In Packs (0)
None
Log in to add to one of your Packs
Attributed By (0)
(Workflows/Files)
None
Favourited By (0)
No one
Statistics
Other workflows that use similar services
(0)
There are no workflows in myExperiment that use similar services to this Workflow.
Comments (0)
No comments yet
Log in to make a comment