Get concept suggestions from term

Created: 2015-02-18 16:32:55

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This workflow suggests concept ids that match the query term. The user can run this workflow with any term of interest as for example "human", "htt", "Transcription" etc, and will get suggestions for concept ids together with descriptions. Then can choose the concept id that matches the best to her/his needs and use it to the rest of the CPA workflows.

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Workflow Components

Authors (0)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (2)

Name	Description
cutoff	cut off parameter to control the amount of matching results
term	The term that the user wants to obtain the concept id

Processors (6)

Name	Type	Description
getConceptSuggestionsFromTerm_input	xmlsplitter
getConceptSuggestionsFromTerm_output	xmlsplitter
getConceptSuggestionsFromTerm_return	xmlsplitter
return_conceptRows	xmlsplitter
conceptRows_conceptRows	xmlsplitter
getConceptSuggestionsFromTerm_2	wsdl	Wsdl http://ws.biosemantics.org/ConceptProfileMiningService?wsdl Wsdl Operation getConceptSuggestionsFromTerm

Beanshells (0)

Outputs (3)

Name	Description
conceptID	the concept id of the matching term
definition	Extra information about this term that will help the user decide which concept id fits the best the input query
name	the name of the matching term

Datalinks (10)

Source	Sink
cutoff	getConceptSuggestionsFromTerm_input:cutOffValue
term	getConceptSuggestionsFromTerm_input:term
getConceptSuggestionsFromTerm_2:parameters	getConceptSuggestionsFromTerm_output:input
getConceptSuggestionsFromTerm_output:return	getConceptSuggestionsFromTerm_return:input
getConceptSuggestionsFromTerm_return:conceptRows	return_conceptRows:input
return_conceptRows:conceptRows	conceptRows_conceptRows:input
getConceptSuggestionsFromTerm_input:output	getConceptSuggestionsFromTerm_2:parameters
conceptRows_conceptRows:conceptId	conceptID
conceptRows_conceptRows:definition	definition
conceptRows_conceptRows:name	name

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Eelke van der Horst

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Information Version 1 (of 1)

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Get concept suggestions from term

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BioSemantics

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Information Statistics

1614 viewings

977 downloads

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Get concept suggestions from term

Created by Eelke van der Horst on Wednesday 18 February 2015 16:32:53 (UTC)

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Purpose of workflow: This workflow takes two concept ids as input and returns the top ranking "B" concepts according to Swanson's ABC model of discovery, where the relationships AB and BC are known and reported in the literature, and the implicit relationship AC is a putative new discovery. It might also be the case that AC is already known. In that case AC does not represent a new discovery but will still be returned (see workflow example values). The B concepts are returned sorted on the pe...

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Get concept suggestions from term

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Other workflows that use similar services (18)