Metabolite pathway search

Created: 2014-12-18 13:33:51

The workflow searches for metabolomic pathways that match the entered keywords and returns information about the chosen pathway

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://myexperiment.org/workflows/4560/download?version=1
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Authors (1)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (1)

Name	Description
keywords	The keywords to search for in the KEGG pathway database

Processors (8)

Beanshells (0)

Outputs (5)

Name	Description
pathway_id	The id of the chosen pathway
pathway_image	A PNG containing the image of the chosen pathway
pathway_description	A description of the chosen pathway
compound_ids	The KEGG ids of the compounds in the chosen pathway
compound_info	Information about the compounds in the chosen pathway

Datalinks (14)

Source	Sink
keywords	Search_for_pathway:keywords
Choose_id:answer_id	Fetch_pathway_image:id
Choose_id:answer_id	Fetch_pathway_description:id
Choose_id:answer_id	Fetch_compounds:id
Extract_compound_data:second	Fetch_compound_description:id
Extract_pathway_data:first	Choose_id:ids
Extract_pathway_data:second	Choose_id:names
Search_for_pathway:responseBody	Extract_pathway_data:kegg_info
Fetch_compounds:responseBody	Extract_compound_data:kegg_info
Choose_id:answer_id	pathway_id
Fetch_pathway_image:responseBody	pathway_image
Fetch_pathway_description:responseBody	pathway_description
Extract_compound_data:second	compound_ids
Fetch_compound_description:responseBody	compound_info