Read GenBank file

Created: 2008-09-27 17:16:45

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The Get_web_page_from_URL downloads a file from myExperiment that contains GenBank data. That data is then saved to a temporary file generated by the create_and_populate_temporary_file beanshell. The path to the temporary file is then passed to the Read_GenBank_file service. That service reads the file and converts the GenBank data into Agave format. The result is then sent to the workflow's out port.

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Option 1:

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http://www.myexperiment.org/workflows/450/download?version=1
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Workflow Components

Inputs (0)

Processors (3)

Name	Type	Description
Read_GenBank_file	local
Create_and_populate_temporary_file	beanshell
Get_web_page_from_URL	local

Beanshells (1)

Name	Description	Inputs	Outputs
Create_and_populate_temporary_file		content	filePath

Outputs (1)

Name	Description
out

Links (3)

Source	Sink
Create_and_populate_temporary_file:filePath	Read_GenBank_file:fileUrl
Get_web_page_from_URL:contents	Create_and_populate_temporary_file:content
Read_GenBank_file:genbankdata	out