Tutorial_1_WorkflowproteinsgenescomparisonTranscriptomics_Datavalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?view=data&acc=GSM1098404&id=13672&db=GeoDb_blob95 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeProteomics_Datanet.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity http://www.ebi.ac.uk/pride/archive/files/21260108 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeImport_into_R_and_Plotgenes11proteins11comparison00net.sf.taverna.t2.activitiesrshell-activity1.4net.sf.taverna.t2.activities.rshell.RshellActivity in1 1 false genes 1 1 proteins 1 1 comparison 0 0 false localhost 6311 false false in1 STRING_LIST genes DOUBLE_LIST proteins DOUBLE_LIST comparison PNG_FILE net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSpreadsheetImportfileurl0net.sf.taverna.t2.activitiesspreadsheet-import-activity1.4net.sf.taverna.t2.activities.spreadsheet.SpreadsheetImportActivity 0 0 22 17748 NaN false false true USER_DEFINED PORT_PER_COLUMN , net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSpreadsheetImportfileurlTranscriptomics_DatavalueproteinsImport_into_R_and_PlotproteinsgenesImport_into_R_and_PlotgenescomparisonImport_into_R_and_Plotcomparison 0fd3dc2c-1553-498e-b0cc-a7fcd89befbc 2014-04-16 14:50:08.486 UTC f7731663-8a5f-42e0-9b73-f54949c478e9 2014-04-10 08:54:07.797 UTC eda0ccc4-391a-4fc1-98fb-6e42065d4c82 2014-04-10 13:08:51.483 UTC a8ba2d22-55de-4daa-aa18-a2a4c2152cfe 2014-04-16 13:17:08.935 UTC e11a1854-fbcf-484d-bc14-2baea456dbc8 2014-04-16 13:58:34.35 UTC b61f4e66-e576-4759-bddb-4f9ef449a19e 2014-04-11 11:36:41.551 UTC e5eaf78a-aed7-4554-af5e-cbf9c354513c 2014-04-11 15:43:53.151 UTC be5930c5-5cbf-4063-83ab-76fb4c05c5d6 2014-04-03 10:21:21.355 UTC de7e6bf1-ddcb-42f3-8280-2cc043a34694 2014-04-10 12:29:19.963 UTC 738b4a62-4f61-4cdf-8608-661e5363e889 2014-04-10 09:13:26.849 UTC e42d0d79-0dc1-4bf0-9c56-e36365a175e5 2014-04-10 15:57:52.632 UTC 88fe3117-7d15-49a8-99c1-585ee7158795 2014-04-10 15:59:49.288 UTC 9f5bb45d-d6cc-4435-96e6-a589df51186d 2014-04-10 12:19:50.337 UTC 52813653-20da-473e-94c8-5b0e7eb13d2b 2014-04-10 15:24:46.552 UTC a77778ec-35f7-438d-9d63-361dad292bfb 2014-04-16 12:08:16.371 UTC c57e9e39-1db0-48f5-b883-a723ec6060f8 2014-04-16 13:47:59.649 UTC acf37402-dd22-465a-9190-9131b4c834f8 2014-04-11 15:08:13.152 UTC ddfa4cc8-a398-4160-9e3a-a9f3568a4fb9 2014-04-16 12:03:22.782 UTC 377082d0-1474-4fe0-9cfc-8fcf9449c94b 2014-04-02 14:22:29.207 UTC b7346f77-1103-4430-9997-cb117b25edf6 2014-04-11 16:54:52.226 UTC 87c345fc-044d-4656-8deb-a16fd04d8b9e 2014-04-10 11:15:19.532 UTC 51f76764-7d7e-465d-bc6c-398f5a6b58cc 2014-04-11 15:57:35.685 UTC Tutorial 1 Workflow 2014-04-16 13:49:05.105 UTC f7a1fc68-9925-43ce-b2d1-a0dbbbc5e066 2014-04-10 09:09:31.535 UTC 581e568c-49d2-4a54-ab34-978faaaec19b 2014-04-02 14:37:18.987 UTC 8de03077-c99d-4660-b500-ec441dd985e9 2014-04-10 14:25:57.19 UTC 97e44e28-288e-486d-92eb-1c6f66baa512 2014-04-10 15:06:51.756 UTC c2b94f14-12b5-429c-96ae-dd5e0e5eaf79 2014-04-16 13:15:06.252 UTC c01cdbda-d2cd-4c6f-9bb8-c0bc4d495091 2014-04-16 13:50:50.429 UTC e11e5eb7-82d9-42d4-aee3-f3462932fb7c 2014-04-11 16:36:57.105 UTC a26c08b7-7e05-4f47-9da8-0039d5170a37 2014-04-10 15:39:04.889 UTC d3280eac-3e7b-48a0-822b-c29064b6fe1e 2014-04-11 15:57:07.989 UTC 963eeaf2-59e5-408b-bc02-2f6ae11ba787 2014-04-11 16:09:13.74 UTC 5b91fabf-15e4-4ff7-b062-fe0fdf5fa642 2014-04-10 14:44:02.496 UTC 624b2bb9-20bd-4031-b5cd-5209a7e8eefc 2014-04-10 08:41:13.446 UTC 0b54c7ac-972f-4ca0-8494-e535850716c6 2014-04-02 14:25:58.123 UTC d5fbe6ed-62a0-4f47-acf0-13fa9321213f 2014-04-10 12:52:43.959 UTC 89b73b19-d3ae-466f-8019-aac6b57b9e0d 2014-04-16 14:12:58.88 UTC f30f6906-0636-476d-b588-853fe07f2f3f 2014-04-10 12:08:43.147 UTC 6442390d-c8e6-4834-a784-125715892471 2014-04-10 11:52:45.785 UTC fa212469-d680-4249-9b3b-ec982ba66db6 2014-04-10 14:45:36.694 UTC b3ab0050-3755-4dd1-bc1a-eb712a5569d8 2014-04-11 10:50:32.36 UTC Fetch and combine transcriptomics and proteomics data from NSC11 cells in GEO and PRIDE respectively. Apply spectral counting on the proteomics data. This workflow is for tutorial/educational use only. The cells were not grown under the same conditions, nor should raw spectral counts be used for protein quantitation. 2014-04-16 13:50:48.187 UTC cb6e07cf-8588-4297-9ee1-5505982d973a 2014-04-10 15:17:51.740 UTC 40a3a5ed-896e-4125-bc88-602823b43d31 2014-04-10 12:40:06.982 UTC e14a86c4-93c8-4f73-9e5b-a1d6e619aa4a 2014-04-11 15:17:57.932 UTC a804cb58-a544-40fa-8d14-31c5b207423f 2014-04-10 08:30:58.865 UTC d06bc0b7-a90e-4bac-8d0a-d9ff81309cdc 2014-04-10 09:16:16.42 UTC 7354473c-a3c2-4752-b285-b267c41e9087 2014-04-10 08:15:54.465 UTC f675de97-39db-4e5c-a96c-3ec0e52d0d5f 2014-04-11 16:58:43.78 UTC 5360f122-eed4-4112-9a21-249f4b4efb8a 2014-04-10 12:14:18.163 UTC 6705059c-4373-4885-921a-7c7565187731 2014-04-16 13:49:36.233 UTC 87307f57-e714-4e1c-ac90-f79838cc6905 2014-04-10 15:01:49.82 UTC 4618e389-988f-480c-9d3a-4a55d0780eb8 2014-04-10 14:54:22.930 UTC a40ec4c2-9337-4c42-a7a0-33523637085c 2014-04-10 09:00:27.760 UTC f77a6da1-880e-41c6-983e-109ba286f2cc 2014-04-16 14:11:20.887 UTC 735f6139-20f2-468b-a6ca-14dfee9b9418 2014-04-11 16:54:46.876 UTC cf054a74-765d-4faa-a5ed-b0d9e4ede462 2014-04-10 08:40:34.585 UTC 98b40c74-c10c-4b14-bd4c-29c4d8ffbc43 2014-04-10 16:17:20.46 UTC 7082c3ae-cfa5-4d23-ac55-4952a7043337 2014-04-10 12:23:22.739 UTC 6c4ba1c2-3708-4a96-ab21-cbdd82b5b8e8 2014-04-10 15:54:40.567 UTC 2d69ebe6-33c5-4eba-bac8-b4528a7cbcbb 2014-04-10 13:01:00.792 UTC e74bea4e-444b-4aaf-9622-56d78619f374 2014-04-10 12:40:16.974 UTC Magnus Palmblad 2014-04-16 13:48:33.815 UTC 978fed05-38dd-4826-bc6a-b93eaf39bff6 2014-04-11 16:58:50.676 UTC d7c1af36-1cdc-40fa-a768-e9df1962ea89 2014-04-10 08:14:50.661 UTC