Compute and correct GC bias in NGS data
Created: 2014-04-03 14:52:51
Galaxy workflow based on deepTools which will compute and correct GC bias in your NGS data. For more information please see the deepTools wiki. This workflow is also available via the Galaxy Tool Shed.
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Inputs (9)
Name |
Description |
BAM file to be checked for GC bias |
|
region |
runtime parameter for tool computeGCBias |
source |
runtime parameter for tool computeGCBias |
effectiveGenomeSize |
runtime parameter for tool computeGCBias |
image_format |
runtime parameter for tool computeGCBias |
fragmentLength |
runtime parameter for tool computeGCBias |
region |
runtime parameter for tool correctGCBias |
source |
runtime parameter for tool correctGCBias |
effectiveGenomeSize |
runtime parameter for tool correctGCBias |
Steps (3)
Name |
Tool |
Description |
Input dataset |
None |
|
computeGCBias |
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools/deeptools_computeGCBias/1.1.0 |
|
correctGCBias |
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools/deeptools_correctGCBias/1.1.0 |
|
Outputs (3)
Name |
Type |
outFileName |
tabular |
outImageName |
png |
outFileName |
bam |
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