EBI_InterproScan_NewServices

Created: 2014-04-03 09:48:29 Last updated: 2014-04-09 13:27:22

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This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text, xml or png. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.

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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (2)

Name	Description
sequence	a protein sequence in Fasta format
email	Your email address

Processors (17)

Name	Type	Description
run	wsdl	Wsdl http://www.ebi.ac.uk/Tools/services/soap/iprscan?wsdl Wsdl Operation run
run_input	xmlsplitter
run_input_2	xmlsplitter
run_output	xmlsplitter
Status	workflow
getResult	wsdl	Wsdl http://www.ebi.ac.uk/Tools/services/soap/iprscan?wsdl Wsdl Operation getResult
getResult_graphic	wsdl	Wsdl http://www.ebi.ac.uk/Tools/services/soap/iprscan?wsdl Wsdl Operation getResult
getResult_input	xmlsplitter
getResult_graphic_input	xmlsplitter
getResult_output	xmlsplitter
getResult_graphic_output	xmlsplitter
text	stringconstant	Value txt
visual_png	stringconstant	Value visual-png
getResult_xml	wsdl	Wsdl http://www.ebi.ac.uk/Tools/services/soap/iprscan?wsdl Wsdl Operation getResult
getResult_xml_input	xmlsplitter
getResult_xml_output	xmlsplitter
xml	stringconstant	Value xml

Beanshells (0)

Outputs (4)

Name	Description
Workflow16_getStatus_output_status
getResult_output_output
Graphical_output
getResult_3_output_output

Datalinks (22)

Source	Sink
run_input:output	run:parameters
run_input_2:output	run_input:parameters
email	run_input:email
sequence	run_input_2:sequence
run:parameters	run_output:input
run_output:jobId	Status:JobID
getResult_input:output	getResult:parameters
getResult_graphic_input:output	getResult_graphic:parameters
run_output:jobId	getResult_input:jobId
text:value	getResult_input:type
run_output:jobId	getResult_graphic_input:jobId
visual_png:value	getResult_graphic_input:type
getResult:parameters	getResult_output:input
getResult_graphic:parameters	getResult_graphic_output:input
getResult_xml_input:output	getResult_xml:parameters
run_output:jobId	getResult_xml_input:jobId
xml:value	getResult_xml_input:type
getResult_xml:parameters	getResult_xml_output:input
Status:getStatus_output_status	Workflow16_getStatus_output_status
getResult_output:output	getResult_output_output
getResult_graphic_output:output	Graphical_output
getResult_xml_output:output	getResult_3_output_output

Coordinations (3)

Controller	Target
Status	getResult_input
Status	getResult_xml_input
Status	getResult_graphic_input

Information Workflow Type

Taverna 2

Information Uploader

Alex Nenadic

Information License

All versions of this Workflow are licensed under:

Information Version 1 (earliest) (of 2)

Information Credits (1)

(People/Groups)

Alex Nenadic

Information Attributions (0)

(Workflows/Files)

None

Information Tags (2)

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Information Shared with Groups (1)

myGrid

Information Featured In Packs (2)

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Information Attributed By (1)

(Workflows/Files)

EBI_InterproScan_broken

Information Favourited By (1)

Mathieu Bousquet

Information Statistics

2354 viewings

1279 downloads

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Citations (0)

None

Version History

In chronological order:

EBI_InterproScan_NewServices

Created by Alex Nenadic on Thursday 03 April 2014 09:48:26 (UTC)
EBI_InterproScan_NewServices

Created by Alex Nenadic on Wednesday 09 April 2014 13:27:22 (UTC)

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Comments (1)

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Christian

I added the example value sequence as a file for testing with Taverna CommandLine.

It can be found at: http://www.myexperiment.org/files/1146.html

Other workflows that use similar services (3)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 2

Uploader

Alan Williams

EBI_InterproScan_NewServices (2)

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This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text and xml. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.