Sample_points_environmentally_unique00 no 2014-03-19 13:57:27.800 UTC Filter environmentally unique points. 2014-03-19 13:57:24.851 UTC spatially_unique00 no 2014-03-19 13:57:45.475 UTC Filter spatially unique points. 2014-03-19 13:57:43.166 UTC layers00 /layers/en/marine/global/incofish/HCAFv4/present/30arc-minutes/178ec510-04c0-11e1-be50-0800200c9a66 /layers/en/marine/global/incofish/HCAFv4/present/30arc-minutes/4be275f0-04c0-11e1-be50-0800200c9a66 2014-03-19 13:59:06.205 UTC Newline separated list of layers defining the environment for point sampling. 2014-03-19 13:58:49.700 UTC mask_id00 Mask id usded for sampling points. 2014-03-19 13:59:39.152 UTC /layers/en/marine/global/incofish/HCAFv4/present/30arc-minutes/178ec510-04c0-11e1-be50-0800200c9a66 2014-03-19 13:59:53.223 UTC num_points00 Number of points to be sampled. 2014-03-19 14:01:02.565 UTC 100 2014-03-19 14:01:05.872 UTC species_label00 Gammarus tigrinus 2014-03-19 14:01:39.631 UTC Species name to be returned for all points. 2014-03-19 14:01:57.72 UTC proportion_of_absences00 1.0 2014-03-19 14:03:06.632 UTC Proportion of absence points to be sampled (value between 0 and 1). 2014-03-19 14:03:20.875 UTC log0 Sample points log. 2014-03-19 14:26:23.714 UTC progress0 Sample points progress. Possible values are: 100 (finished), -2 (aborted) or -3 (cancelled). 2014-03-19 14:26:59.470 UTC presence_points_xml0 XML with sampled presence points. 2014-03-19 14:27:55.817 UTC absence_points_xml0 XML with sampled absence points. 2014-03-19 14:28:03.274 UTC make_xmlmask_id0layers0species_label0num_points0spatially_unique0environmentally_unique0proportion_of_absences0xml00net.sf.taverna.t2.activitiesbeanshell-activity1.5-SNAPSHOTnet.sf.taverna.t2.activities.beanshell.BeanshellActivity environmentally_unique 0 text/plain java.lang.String true mask_id 0 text/plain java.lang.String true layers 0 text/plain java.lang.String true spatially_unique 0 text/plain java.lang.String true proportion_of_absences 0 text/plain java.lang.String true num_points 0 text/plain java.lang.String true species_label 0 text/plain java.lang.String true xml 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecall_servicesamplePoints_configuration0output_log00output_progress00presence_points_xml00absence_points_xml00 This part is responsible for calling the service and fetching results. 2014-03-19 14:12:49.452 UTC net.sf.taverna.t2.activitiesdataflow-activity1.5-SNAPSHOTnet.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemake_xmlmask_idmask_idmake_xmllayerslayersmake_xmlspecies_labelspecies_labelmake_xmlnum_pointsnum_pointsmake_xmlspatially_uniquespatially_uniquemake_xmlenvironmentally_uniqueenvironmentally_uniquemake_xmlproportion_of_absencesproportion_of_absencescall_servicesamplePoints_configurationmake_xmlxmllogcall_serviceoutput_logprogresscall_serviceoutput_progresspresence_points_xmlcall_servicepresence_points_xmlabsence_points_xmlcall_serviceabsence_points_xml 527129f7-f393-4b32-baf4-1e95040157bb 2014-03-19 14:52:26.19 UTC Randomly sample a specified number of absence and/or presence points in a given environment. 2014-03-19 14:52:16.207 UTC c966c219-e9ee-433f-af30-2fcd4977454d 2014-03-19 16:33:34.412 UTC 6fb6c846-6501-4b1b-9ca7-c97b9fb1a98d 2014-03-19 16:48:56.344 UTC f042d666-7636-475c-a753-31b39921adef 2014-03-19 14:55:53.504 UTC a61c6357-07cb-42a9-8aec-75477a8bcb0a 2014-03-19 16:53:44.457 UTC cb7910c6-b117-4c76-ace0-37552be4dffe 2014-03-19 14:13:21.354 UTC 1b9e6dc9-3a85-46db-917c-5dc215d9dd24 2014-03-19 14:26:25.337 UTC 65575a6f-1424-4d86-ac2f-870914dc9c9a 2014-03-19 16:47:58.202 UTC Alan R Williams & Renato De Giovanni 2014-03-19 14:51:45.194 UTC 5e9880df-392b-4ce2-8596-147657e7cc2d 2014-03-19 16:51:55.879 UTC 03ed681d-6837-4e1c-84d9-852f273175da 2014-03-19 14:28:05.208 UTC Sample points. 2014-03-19 14:52:24.288 UTC ac77a8fa-cf3d-45cf-8aa9-7b77e678d1ea 2014-03-19 16:34:21.459 UTC c283319a-f1c2-4456-b914-0ffb2d0d2a11 2014-03-19 16:36:32.57 UTC b16d4447-cae6-4aa5-8df8-1a8c89f1328c 2014-03-19 14:31:03.82 UTC 8782870d-2d60-438c-a077-c32d570b4a19 2014-03-19 14:25:40.627 UTC Test_modelsamplePoints_configuration00 XML configuration used to sample points. 2014-03-19 14:11:47.848 UTC output_progress0 The progress in creating the model. This should be -2 (failure) or 100 (success) for the looping to have finished. 2011-11-24 18:43:17.964 UTC output_log0 The log of the model testing. This is output for information. 2011-11-24 18:42:16.371 UTC presence_points_xml0 XML string with sampled presence points. 2014-03-19 14:24:19.30 UTC absence_points_xml0 XML string with sampled absence points. 2014-03-19 14:24:10.715 UTC loop_until_progress_completeinput_ticket0output_progress00net.sf.taverna.t2.componentcomponent-activity1.5-SNAPSHOTnet.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components loop_until_progress_complete 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>output_progress</name> <depth>0</depth> <mimeTypes class="java.util.Collections$EmptyList" /> <handledReferenceSchemes class="java.util.Collections$EmptyList" reference="../mimeTypes" /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <mimeTypes /> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + !(output_progress.equals("-2") || output_progress.equals("100")); if ("true".matches(loop)) { Thread.sleep(5000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetLog_inputticket0output00net.sf.taverna.t2.activitieswsdl-activity1.5-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity ticket 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getLog" name="Body" qname="{http://openmodeller.cria.org.br/ws/2.0}getLog"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="ticket" qname="&gt;getLog&gt;ticket" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetLog_outputinput0log00net.sf.taverna.t2.activitieswsdl-activity1.5-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false log 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getLogResponse" name="Body" qname="{http://openmodeller.cria.org.br/ws/2.0}getLogResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="log" qname="&gt;getLogResponse&gt;log" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetLogBody0Body00net.sf.taverna.t2.activitieswsdl-activity1.5-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.WSDLActivity http://modeller.cria.org.br/ws2/om?wsdl getLog net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 3 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecheckProgressinput_progress0output_progress00net.sf.taverna.t2.activitiesbeanshell-activity1.5-SNAPSHOTnet.sf.taverna.t2.activities.beanshell.BeanshellActivity input_progress 0 text/plain java.lang.String true output_progress 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesamplePointsBody0Body00net.sf.taverna.t2.activitieswsdl-activity1.5-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.WSDLActivity http://modeller.cria.org.br/ws2/om?wsdl samplePoints net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesamplePoints_Bodyinput0ticket00net.sf.taverna.t2.activitieswsdl-activity1.5-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false ticket 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="samplePointsResponse" name="Body" qname="{http://openmodeller.cria.org.br/ws/2.0}samplePointsResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="ticket" qname="&gt;samplePointsResponse&gt;ticket" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetSamplingResultBody0Body00net.sf.taverna.t2.activitieswsdl-activity1.5-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.WSDLActivity http://modeller.cria.org.br/ws2/om?wsdl getSamplingResult net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetSamplingResult_Bodyinput0Sampler00net.sf.taverna.t2.activitieswsdl-activity1.5-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false Sampler 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getSamplingResultResponse" name="Body" qname="{http://openmodeller.cria.org.br/ws/2.0}getSamplingResultResponse"><s:elements><s:complextype optional="true" unbounded="false" typename="Sampler" name="Sampler" qname="{http://openmodeller.cria.org.br/xml/2.0}&gt;getSamplingResultResponse&gt;Sampler"><s:elements><s:complextype optional="false" unbounded="false" typename="EnvironmentType" name="Environment" qname="{http://openmodeller.cria.org.br/xml/2.0}SamplerType&gt;Environment"><s:elements><s:arraytype optional="false" unbounded="true" wrapped="false" typename="ModellingLayerType" name="Map" qname="{http://openmodeller.cria.org.br/xml/2.0}EnvironmentType&gt;Map"><s:elementtype><s:complextype optional="false" unbounded="false" typename="ModellingLayerType" name="" qname="{http://openmodeller.cria.org.br/xml/2.0}ModellingLayerType"><s:elements /><s:attributes><s:attribute optional="false" unbounded="false" typename="BasicLayerType&gt;Id" name="Id" qname="BasicLayerType&gt;Id" /><s:attribute optional="false" unbounded="false" typename="ModellingLayerType&gt;IsCategorical" name="IsCategorical" qname="ModellingLayerType&gt;IsCategorical" /><s:attribute optional="false" unbounded="false" typename="ModellingLayerType&gt;Min" name="Min" qname="ModellingLayerType&gt;Min" /><s:attribute optional="false" unbounded="false" typename="ModellingLayerType&gt;Max" name="Max" qname="ModellingLayerType&gt;Max" /></s:attributes></s:complextype></s:elementtype></s:arraytype><s:complextype optional="false" unbounded="false" typename="BasicLayerType" name="Mask" qname="{http://openmodeller.cria.org.br/xml/2.0}EnvironmentType&gt;Mask"><s:elements /></s:complextype></s:elements><s:attributes><s:attribute optional="false" unbounded="false" typename="EnvironmentType&gt;NumLayers" name="NumLayers" qname="EnvironmentType&gt;NumLayers" /></s:attributes></s:complextype><s:complextype optional="false" unbounded="false" typename="OccurrencesType" name="Presence" qname="{http://openmodeller.cria.org.br/xml/2.0}SamplerType&gt;Presence"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="CoordinateSystem" qname="{http://openmodeller.cria.org.br/xml/2.0}OccurrencesType&gt;CoordinateSystem" /><s:arraytype optional="false" unbounded="true" wrapped="false" typename="&gt;OccurrencesType&gt;Point" name="Point" qname="{http://openmodeller.cria.org.br/xml/2.0}OccurrencesType&gt;Point"><s:elementtype><s:complextype optional="false" unbounded="false" typename="&gt;OccurrencesType&gt;Point" name="" qname="{http://openmodeller.cria.org.br/xml/2.0}&gt;OccurrencesType&gt;Point"><s:elements /><s:attributes><s:attribute optional="false" unbounded="false" typename="&gt;OccurrencesType&gt;Point&gt;Id" name="Id" qname="&gt;OccurrencesType&gt;Point&gt;Id" /><s:attribute optional="false" unbounded="false" typename="&gt;OccurrencesType&gt;Point&gt;X" name="X" qname="&gt;OccurrencesType&gt;Point&gt;X" /><s:attribute optional="false" unbounded="false" typename="&gt;OccurrencesType&gt;Point&gt;Y" name="Y" qname="&gt;OccurrencesType&gt;Point&gt;Y" /><s:attribute optional="false" unbounded="false" typename="&gt;OccurrencesType&gt;Point&gt;Sample" name="Sample" qname="&gt;OccurrencesType&gt;Point&gt;Sample" /></s:attributes></s:complextype></s:elementtype></s:arraytype></s:elements><s:attributes><s:attribute optional="false" unbounded="false" typename="OccurrencesType&gt;Count" name="Count" qname="OccurrencesType&gt;Count" /><s:attribute optional="false" unbounded="false" typename="OccurrencesType&gt;Label" name="Label" qname="OccurrencesType&gt;Label" /></s:attributes></s:complextype><s:complextype optional="true" unbounded="false" typename="OccurrencesType" name="Absence" qname="{http://openmodeller.cria.org.br/xml/2.0}SamplerType&gt;Absence"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="CoordinateSystem" qname="{http://openmodeller.cria.org.br/xml/2.0}OccurrencesType&gt;CoordinateSystem" /><s:arraytype id="{http://openmodeller.cria.org.br/xml/2.0}OccurrencesType&gt;Point" optional="false" unbounded="true" wrapped="false" typename="&gt;OccurrencesType&gt;Point" name="Point" /></s:elements></s:complextype><s:complextype id="{http://openmodeller.cria.org.br/xml/2.0}SamplerType&gt;Absence" optional="true" unbounded="false" typename="OccurrencesType" name="Absence" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeextract_presence_pointsxml_text0nodelistAsXML11net.sf.taverna.t2.activitiesxpath-activity1.5-SNAPSHOTnet.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <Sampler xmlns="http://openmodeller.cria.org.br/xml/2.0"> <Environment NumLayers="2"> <Map Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/14aecd40-04d9-11e1-be50-0800200c9a66" IsCategorical="0" Min="-281" Max="310"/> <Map Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/bf441530-04d9-11e1-be50-0800200c9a66" IsCategorical="0" Min="9" Max="211"/> <Mask Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/14aecd40-04d9-11e1-be50-0800200c9a66"/> </Environment> <Presence Label="Test species" Count="5"> <CoordinateSystem>GEOGCS['1924 ellipsoid',DATUM['Not_specified',SPHEROID['International 1924',6378388,297, AUTHORITY['EPSG','7022']],AUTHORITY['EPSG','6022']],PRIMEM['Greenwich',0,AUTHORITY['EPSG','8901']],UNIT['degree', 0.0174532925199433,AUTHORITY['EPSG','9108']],AUTHORITY['EPSG','4022']]</CoordinateSystem> <Point Id="1" X="-68.85" Y="-11.15" Sample="250 107"/> <Point Id="2" X="-67.38" Y="-14.32" Sample="260 114"/> <Point Id="3" X="-67.15" Y="-15.52" Sample="225 112"/> <Point Id="4" X="-65.12" Y="-16.73" Sample="254 112"/> <Point Id="5" X="-63.17" Y="-17.80" Sample="241 103"/> </Presence> </Sampler> /default:Sampler/default:Presence/default:Point default http://openmodeller.cria.org.br/xml/2.0 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_String_2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5-SNAPSHOTnet.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeextract_absence_pointsxml_text0nodelistAsXML11net.sf.taverna.t2.activitiesxpath-activity1.5-SNAPSHOTnet.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <Sampler xmlns="http://openmodeller.cria.org.br/xml/2.0"> <Environment NumLayers="2"> <Map Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/14aecd40-04d9-11e1-be50-0800200c9a66" IsCategorical="0" Min="-281" Max="310"/> <Map Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/bf441530-04d9-11e1-be50-0800200c9a66" IsCategorical="0" Min="9" Max="211"/> <Mask Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/14aecd40-04d9-11e1-be50-0800200c9a66"/> </Environment> <Absence Label="Test species" Count="5"> <CoordinateSystem>GEOGCS['1924 ellipsoid',DATUM['Not_specified',SPHEROID['International 1924',6378388,297, AUTHORITY['EPSG','7022']],AUTHORITY['EPSG','6022']],PRIMEM['Greenwich',0,AUTHORITY['EPSG','8901']],UNIT['degree', 0.0174532925199433,AUTHORITY['EPSG','9108']],AUTHORITY['EPSG','4022']]</CoordinateSystem> <Point Id="1" X="-68.85" Y="-11.15" Sample="250 107"/> <Point Id="2" X="-67.38" Y="-14.32" Sample="260 114"/> <Point Id="3" X="-67.15" Y="-15.52" Sample="225 112"/> <Point Id="4" X="-65.12" Y="-16.73" Sample="254 112"/> <Point Id="5" X="-63.17" Y="-17.80" Sample="241 103"/> </Absence> </Sampler> /default:Sampler/default:Absence/default:Point default http://openmodeller.cria.org.br/xml/2.0 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_String_1stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5-SNAPSHOTnet.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeloop_until_progress_completeinput_ticketsamplePoints_BodyticketgetLog_inputticketsamplePoints_BodyticketgetLog_outputinputgetLogBodygetLogBodygetLog_inputoutputcheckProgressinput_progressloop_until_progress_completeoutput_progresssamplePointsBodysamplePoints_configurationsamplePoints_BodyinputsamplePointsBodygetSamplingResultBodysamplePointsBodygetSamplingResult_BodyinputgetSamplingResultBodyextract_presence_pointsxml_textgetSamplingResult_BodySamplerMerge_String_List_to_a_String_2stringlistextract_presence_pointsnodelistAsXMLextract_absence_pointsxml_textgetSamplingResult_BodySamplerMerge_String_List_to_a_String_1stringlistextract_absence_pointsnodelistAsXMLoutput_progresscheckProgressoutput_progressoutput_loggetLog_outputlogpresence_points_xmlMerge_String_List_to_a_String_2concatenatedabsence_points_xmlMerge_String_List_to_a_String_1concatenated 78eb0e64-0b62-4d9f-9615-0ab55248c180 2011-11-01 13:32:31.796 UTC f39d661b-5ad6-47e2-963c-1c9019c2ac62 2014-03-19 16:51:42.697 UTC 355cef2e-25d4-4536-ae04-ee179ea5ba69 2011-11-01 12:50:16.51 UTC 1cc516b7-1e91-449f-ba3a-0c1b441f44af 2013-05-15 17:13:47.275 UTC 1e59a407-40a2-4a7b-a03a-32bb974ea9db 2013-10-03 15:32:05.910 UTC 2f2e5421-321a-4b08-a3e0-6052682bb58c 2013-12-10 17:52:36.677 UTC 5113aef3-ad85-46cf-9cce-5c1177f089bc 2014-03-19 16:34:15.781 UTC Test model 2011-11-24 18:38:13.898 UTC d2e85856-ff10-44f7-81fe-39e7b8cc8f93 2011-11-24 18:57:32.279 UTC 232c02df-7eca-469d-80bb-6b500c216742 2014-03-19 14:50:27.254 UTC 55f3fbd4-c7a3-461d-a419-356e3571f993 2014-03-19 14:17:57.859 UTC 44324d23-56ba-462c-9983-8d5181018a60 2014-03-19 14:12:05.320 UTC 92ddda76-d9d3-432d-89c1-14299c1cc81f 2011-11-22 18:10:23.70 UTC dd07a5e8-16a1-4e18-8ee4-8fdda79d2379 2014-03-19 16:47:48.608 UTC a183ec01-d587-437e-b1d2-aa65ff9a3ccf 2013-12-10 17:37:35.206 UTC 29f37aee-a378-48a7-b93a-5ff8a905ad56 2011-11-01 12:57:39.12 UTC 8bee7949-a15c-4580-89b1-cb93766a45ca 2011-11-01 17:23:20.128 UTC b5972b2a-dd73-4e14-9e66-bf5e29f814e3 2011-11-01 14:58:36.479 UTC 73913773-e684-4aa6-9beb-ff6adc8f30ee 2011-11-01 12:34:44.825 UTC 15ee13a5-7fe5-42b2-af5c-39362d3fabb8 2013-10-03 15:31:05.76 UTC ae625384-46da-4dfd-a1df-517620e11043 2013-10-09 16:35:11.528 UTC d96bdc79-0b84-4acf-8640-a0d121389834 2011-11-04 13:44:11.745 UTC Alan R Williams 2011-11-24 18:38:18.474 UTC e9de109a-5135-4c3c-839d-dcf82bc3fa30 2011-11-01 16:04:23.263 UTC df90423c-27c5-43a9-87fe-1274eede8691 2011-11-22 17:34:54.535 UTC 4da4102f-8671-42d1-ae5e-4242853ccd68 2011-11-01 17:20:19.589 UTC b7cfbe7f-e001-4ad7-b717-bc76ee9b57fd 2013-10-03 18:19:22.464 UTC e72ddcf7-8ffb-413b-9039-e0b5ce3cc011 2011-11-01 12:17:19.381 UTC 677ba6d4-bf6c-4662-9e5f-9e78df98f55f 2011-11-01 13:41:25.944 UTC f01d2d16-3d8a-48a2-a7b6-1ffc64c600fe 2014-03-19 16:36:25.271 UTC db008ac5-5b51-4267-b62e-7e3c42d02a3f 2014-02-13 09:46:46.98 UTC 96583700-ed98-4cd2-a9c9-f05b9b611c41 2013-10-04 07:48:11.98 UTC b81c6344-16f9-407e-85be-e5729bbe84f9 2014-03-19 16:33:00.716 UTC This workflow uses openModeller to test a model using the specified configuration. 2012-12-21 17:14:42.239 UTC e85c7a89-677e-4ef3-a0e8-9d7582a923e2 2012-12-21 17:14:43.643 UTC d71b64e2-85a6-422b-bd9b-c4e3ce3b8e2a 2013-10-03 15:38:18.369 UTC ef14550e-5393-4f1e-9ce5-00e8a3cd9b17 2014-03-19 14:55:46.327 UTC 6499f3c4-752b-4a0c-8d5f-58e243657e79 2011-11-24 18:44:13.748 UTC 7560f897-6e7a-400c-b0c9-ae499f82e75e 2014-03-19 14:24:56.339 UTC 81f8e562-7c82-43f3-b930-d5e03b8eaf41 2011-11-01 13:37:04.176 UTC 1fd43924-92a7-463f-a883-72ead95d64ba 2011-11-01 13:42:22.377 UTC caca1aad-a78c-42d1-8dd1-f4c9d7f2fe87 2014-03-19 16:48:46.212 UTC