NGS : Filter contamination in raw reads by ID

Created: 2014-02-28 11:04:23 Last updated: 2014-06-10 09:26:45

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Filter FastQ sequences by ID

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Inputs (2)

Name	Description
FastQ file
File containing target IDs

Steps (5)

Name	Tool	Description
Input dataset	None
Input dataset	None
FASTQ to FASTA	toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_fasta/cshl_fastq_to_fasta/1.0.0
Filter fasta sequences	get_seqs
Combine FASTA and QUAL	fastq_combiner

Outputs (4)

Name	Type
output	fasta
selected	fasta
unselected	fasta
output_file	fastqsanger

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Ylebras

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Information Statistics

568 viewings

502 downloads

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Citations (1)

1. Y. Le Bras, A. Roult, C. Monjeaud, M. Bahin, O. Quenez, C. Heriveau, A. Bretaudeau, O. Sallou, O. Collin, Towards a Life Sciences Virtual Research Environment : an e-Science initiative in Western France, JOBIM 2013, 03 July 2013, https://www.e-biogenouest.org/resources/128

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