Population genomics : From Blast xml format to species specifics sequences

Created: 2014-02-27 17:53:02 Last updated: 2014-06-10 09:25:07

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Parse Blast XML results to obtain species specifics sequences

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Inputs (1)

Name	Description
Blast XML output

Steps (6)

Name	Tool	Description
Input dataset	None
Parse blast XML output	megablast_xml_parser
Compute	Add_a_column1
Filter	testtoolshed.g2.bx.psu.edu/repos/greg/gregs_filter/Filter1/3.3.0
Filter	testtoolshed.g2.bx.psu.edu/repos/greg/gregs_filter/Filter1/3.3.0
Group	Grouping1

Outputs (5)

Name	Type
output1	tabular
out_file1	input
out_file1	input
out_file1	input
out_file1	tabular

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Galaxy

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Ylebras

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Information Statistics

1004 viewings

612 downloads

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Citations (1)

1. Y. Le Bras, A. Roult, C. Monjeaud, M. Bahin, O. Quenez, C. Heriveau, A. Bretaudeau, O. Sallou, O. Collin, Towards a Life Sciences Virtual Research Environment : an e-Science initiative in Western France, JOBIM 2013, 03 July 2013, https://www.e-biogenouest.org/resources/128

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