NGS : Pair reads assembly with Velvet Workflow

Created: 2014-02-27 11:45:40 Last updated: 2014-06-10 09:21:09

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Paired-end reads assembly after fastQ groomer using a Migale (France INRA core facility https://migale.jouy.inra.fr/) modified version of Velvet tool suite descriptors

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Inputs (2)

Name	Description
Fastq paired /1
Fastq paired /2

Steps (6)

Name	Tool	Description
Input dataset	None
Input dataset	None
FASTQ Groomer	fastq_groomer
FASTQ Groomer	fastq_groomer
velveth by MIGALE	velveth_jgi
velvetg by MIGALE	velvetg_jgi

Outputs (8)

Name	Type
output_file	fastqsanger
output_file	fastqsanger
output	velvet
velvetg_outfile	txt
contigs_outfile	fasta
stats_outfile	tabular
unused_reads_outfile	fasta
amos_outfile	txt

Information Workflow Type

Galaxy

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Ylebras

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Information Version 1 (of 1)

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Ylebras

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Information Statistics

939 viewings

587 downloads

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Citations (1)

1. Y. Le Bras, A. Roult, C. Monjeaud, M. Bahin, O. Quenez, C. Heriveau, A. Bretaudeau, O. Sallou, O. Collin, Towards a Life Sciences Virtual Research Environment : an e-Science initiative in Western France, JOBIM 2013, 03 July 2013, https://www.e-biogenouest.org/resources/128

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NGS : Pair reads assembly with Velvet Workflow

Created by Ylebras on Thursday 27 February 2014 11:45:40 (UTC)

Last edited by Ylebras on Thursday 27 February 2014 17:48:48 (UTC)

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