A Talend mashup to discover PARP proteins involved in Reactome pathway

Created: 2014-02-10 19:07:44 Last updated: 2014-04-07 06:36:29

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A mashup workflow done using Talend ETL and Bio2RDF's components to consume Linked Data and transform RDF using SPARQL.

This demo workflow consume RDF from Bio2RDF's HGNC and GO SPARQL endpoints and from EBI's Reactome and UniProt official endpoints. The query discover which PARP protein is part of a reactome pathway and fetch its description form UniProt and GO.

To execute this workflow you need to :

1) Install a local Virtuoso triplesore (http://virtuoso.openlinksw.com/dataspace/doc/dav/wiki/Main/VOSDownload)

2) Install Talend ETL free software (http://www.talend.com/download/data-integration)

3) Import Bio2RDF's component from Talend Exchange (http://www.talendforge.org/exchange/)

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Information Workflow Type

Talend

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Francois Belleau

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Francois Belleau

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2093 viewings

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Version History

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Mashup to discover PARP protein pathways

Created by Francois Belleau on Monday 10 February 2014 19:07:44 (UTC)

Last edited by Francois Belleau on Tuesday 11 February 2014 02:07:59 (UTC)
Mashup to discover PARP protein pathways

Created by Francois Belleau on Monday 24 March 2014 12:30:59 (UTC)

Last edited by Francois Belleau on Monday 24 March 2014 12:31:14 (UTC)
A Talend mashup to discover PARP proteins involved in Reactome pathway

Created by Francois Belleau on Monday 07 April 2014 06:31:12 (UTC)

Last edited by Francois Belleau on Monday 07 April 2014 06:36:29 (UTC)

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