A Talend mashup to discover PARP proteins involved in Reactome pathway

Created: 2014-02-10 19:07:44      Last updated: 2014-04-07 06:36:29

A mashup workflow done using Talend ETL and Bio2RDF's components to consume Linked Data and transform RDF using SPARQL.

This demo workflow consume RDF from Bio2RDF's HGNC and GO SPARQL endpoints and from EBI's Reactome and UniProt official endpoints. The query discover which PARP protein is part of a reactome pathway and fetch its description form UniProt and GO.

To execute this workflow you need to :

1) Install a local Virtuoso triplesore (http://virtuoso.openlinksw.com/dataspace/doc/dav/wiki/Main/VOSDownload)

2) Install Talend ETL free software (http://www.talend.com/download/data-integration)

3) Import Bio2RDF's component from Talend Exchange (http://www.talendforge.org/exchange/)

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