This workflow eases entry in the world of Taverna with one of the key tasks - the retrieval of plain data. The dbfetch offers sequence and structure data from a large variety of sources. A first execution of this workflow informs about these in the "getSupportedDBs" output. Also the formats and styles are listed. The two inputs allow for the specification of a query that leaves the format with "default" (which is different for every database, "native" would be a better fit), the style is always "raw". With the output being presented as a list of strings, which is very slow for larger entries, the list of lines are merged into single strings for each entry prior to the display.
http://www.ebi.ac.uk/ws/services/urn:Dbfetch?wsdl
getSupportedDBs
http://www.ebi.ac.uk/ws/services/urn:Dbfetch?wsdl
getSupportedFormats
http://www.ebi.ac.uk/ws/services/urn:Dbfetch?wsdl
getSupportedStyles
pdb
1mtu
default
raw
http://www.ebi.ac.uk/ws/services/urn:Dbfetch?wsdl
fetchBatch
org.embl.ebi.escience.scuflworkers.java.StringListMerge
Identifier of database queried. Multiple entries should be retrieved by single comma-separated string. A possible input is "1mtu" for the database "pdb", or "P12345" for the database "uniprotkb", "P53_HUMAN" another, which should then appear as a second input.
The database to query. Inspect the output of "SupportedDBs" for details. "uniprotkb" or "pdb" are possible values.
List of strings, each listing the internal name of a well known database.
List of strings, each mentioning a database and a comma separated list of formats that this database supports.
List of strings, each containing an entry of the database as a single string.