get_available_layersuse_biostif_layers00 yes 2013-12-06 11:50:09.626 UTC Indicate if the BioSTIF service should be queried in case one or more layers stored there will be used during the modelling procedure. Possible values are "yes" or "no" (string without double quote). 2013-12-06 11:52:05.519 UTC om_layers_xml0 <ns2:getLayersResponse xmlns:ns2="http://openmodeller.cria.org.br/ws/2.0" xmlns:ns3="http://openmodeller.cria.org.br/xml/2.0"> <ns3:AvailableLayers> <ns3:LayersGroup Id="1"> <ns3:Label>marine layers</ns3:Label> <ns3:LayersGroup Id="2"> <ns3:Label>aquamaps HCAFv4</ns3:Label> <ns3:Layer HasProjection="true" Id="a8150460-3aca-11e1-b86c-0800200c9a66"> <ns3:Label>Mean bottom salinity (psu)</ns3:Label> </ns3:Layer> <ns3:Layer HasProjection="true" Id="a8150461-3aca-11e1-b86c-0800200c9a66"> <ns3:Label>Mean surface salinity (psu)</ns3:Label> </ns3:Layer> <ns3:Layer HasProjection="true" Id="a8152b70-3aca-11e1-b86c-0800200c9a66"> <ns3:Label>Mean bottom temperature (Celsius)</ns3:Label> </ns3:Layer> </ns3:LayersGroup> </ns3:LayersGroup> </ns3:AvailableLayers> </ns2:getLayersResponse> 2014-02-13 09:13:01.517 UTC XML according to openModeler Web Service 2.0 getLayersResponse element: http://openmodeller.sourceforge.net/web_service_2.html#toc16 2014-02-13 08:22:25.76 UTC biostif_layers_xml_list1 XML according to BioSTIF service response. 2014-02-13 08:26:43.245 UTC <layers> <layer> <name>biovel_temp:NorwayExclEconZoneEEZ_2050-present_20140212_200910_127</name> <url>http://biovel.iais.fraunhofer.de/geoserver/ows?</url> </layer> <layer> <name>biovel_temp:NorwatExclusiveEconZone_2100-present_20140212_200735_251</name> <url>http://biovel.iais.fraunhofer.de/geoserver/ows?</url> </layer> </layers> 2014-02-13 08:24:21.171 UTC getLayersBody00net.sf.taverna.t2.activitieswsdl-activity1.5net.sf.taverna.t2.activities.wsdl.WSDLActivity http://modeller.cria.org.br/ws2/om?wsdl getLayers net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecontrol_biostifuse_biostif_layers0flag11empty_list11net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity use_biostif_layers 0 text/plain java.lang.String true flag 1 1 empty_list 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokequery_biostifsentinel0responseBody11net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_1inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_2inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecontrol_biostifuse_biostif_layersuse_biostif_layersquery_biostifsentinelcontrol_biostifflagFlatten_List_1inputlistquery_biostifresponseBodyFlatten_List_2inputlistFlatten_List_1outputlistFlatten_List_2inputlistcontrol_biostifempty_listom_layers_xmlgetLayersBodybiostif_layers_xml_listFlatten_List_2outputlist a107ae01-a239-42ee-8f36-56a79113c600 2012-12-18 18:02:50.213 UTC 77d71a3d-792d-45e9-904d-54a05e45fd03 2012-12-21 14:13:07.312 UTC c5a5991c-1781-4330-9818-95442341987d 2012-12-18 18:19:44.262 UTC f00ff6f6-e4a6-4163-a1db-aa72b662e489 2014-02-13 08:27:32.668 UTC a25cdf8f-ef1b-49c6-b1a9-ab3130ac44d8 2012-12-18 18:16:16.815 UTC 0a6632b4-c497-4abf-8a4f-8e2af50f73ed 2012-12-18 18:05:06.886 UTC Alan R Williams & Renato De Giovanni 2012-12-21 14:13:01.961 UTC cef80350-0e89-4b5e-b551-4d6dad030ac7 2012-12-18 18:13:57.209 UTC 96997a38-deca-4cf6-a8e1-deaa0823c654 2013-12-06 18:06:22.221 UTC 55efeb2c-2cd4-48bd-9ff7-8783bccbf24c 2014-02-13 09:13:24.919 UTC 8f25f08d-c056-409e-8774-a6142e1423fe 2014-10-15 18:57:27.220 UTC b4c90bcc-3073-4128-849e-a56ad27cde77 2014-03-13 18:25:17.895 UTC 2b60c3d6-e0cd-4137-8466-9768b3f31f6c 2013-12-06 12:08:36.58 UTC 3067e99f-eea4-4b7c-9582-2879de6cf93b 2013-12-06 18:07:33.467 UTC 93da43a9-8010-4c1f-b2c1-ef6d61648282 2012-12-18 18:17:44.458 UTC 9a22d825-254d-4427-8137-d040d5c8b976 2013-10-03 15:15:43.786 UTC Retrieves all available environmental layers from the openModeller web service and optionally from the BioSTIF service. In the first case, a single XML is returned according to the openModeller XML Schema, and in the second case a list of XML is returned for each BioSTIF workspace. 2014-03-13 18:24:19.847 UTC 358702fa-bf73-41fd-b6ce-1eda01bba7ef 2012-12-18 18:25:38.730 UTC get_available_layers 2013-12-06 18:05:29.633 UTC query_biostifsentinel00responseBody1Extract_Workspace_Namesxml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.5net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <workspaces> <workspace> <name>biovel</name> <url>http://biovel.iais.fraunhofer.de/shim/rest/raster/biovel</url> </workspace> <workspace> <name>palokangas</name> <url>http://biovel.iais.fraunhofer.de/shim/rest/raster/palokangas</url> </workspace> <workspace> <name>biovel_temp</name> <url>http://biovel.iais.fraunhofer.de/shim/rest/raster/biovel_temp</url> </workspace> <workspace> <name>rtemp</name> <url>http://biovel.iais.fraunhofer.de/shim/rest/raster/rtemp</url> </workspace> </workspaces> /workspaces/workspace/name net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGet_Workspacename0responseBody00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity GET http://biostif.at.biovel.eu/shim/rest/raster/{name} application/xml application/xml String false false false false true name java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGet_WorkspacesresponseBody00net.sf.taverna.t2.activitiesrest-activity1.5net.sf.taverna.t2.activities.rest.RESTActivity GET http://biostif.at.biovel.eu/shim/rest/raster application/xml application/xml String false false false false true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeExtract_Workspace_Namesxml_textGet_WorkspacesresponseBodyGet_WorkspacenameExtract_Workspace_NamesnodelistresponseBodyGet_WorkspaceresponseBody 6a820661-1679-41a3-aadc-59461629a733 2013-12-06 12:03:25.512 UTC abf8b321-46dc-413c-b10e-e9047603a1fc 2014-11-18 18:28:00.914 UTC ac882963-6c6d-4a7d-b0af-1491b318abf3 2014-10-15 18:57:06.510 UTC d76068ec-0148-46df-842e-cb2245d60767 2013-12-06 12:03:36.59 UTC query_biostif 2013-12-06 12:03:13.188 UTC