This grid-executed Mustang application performs a structural alignment of protein sequences. The number of arguments is variable, in principle, but is shown here for three. The application is executed via the Taverna-ARC plugin on a machine of the NorduGrid. Although your machine can be a part of it, you may prefer to wait for a later version of that interface that does not require grid certificates.
structural alignment of arbitrary number of protein structures
mustang
http://www.myexperiment.org/workflows/167/download?version=1
http://www.myexperiment.org/workflows/167/download?version=1
http://www.myexperiment.org/workflows/167/download?version=1
A PDB ID like '1va1'. The corresponding PDB entry is fetched from the database.
A PDB ID like '1va2. The corresponding PDB entry is fetched from the database.
A PDB ID like '1va3'. The corresponding PDB entry is fetched from the database.
Standard output of mustang.
Error messages are presented here. If there are any, then these should be forwarded to the author of this workflow.
application/x-chemical
chemical/x-pdb
Overlay of all structurally aligned structures.
A protein sequence alignment that has its assignment primarily in the spacial vicinity of the corresponding amino acids in the protein structure alignment.
chemical/x-pdb
The first structure that was retrieved from PDB.
chemical/x-pdb
The second structure that was retrieved from PDB.
chemical/x-pdb
The third structure that was retrieved from PDB.