Get_concept_suggesticutoff00 5 2013-08-31 14:44:31.562 UTC cut off parameter to control the amount of matching results 2013-08-31 14:44:28.634 UTC term00 htt 2013-08-31 14:44:10.993 UTC The term that the user wants to obtain the concept id 2013-08-31 14:44:08.255 UTC conceptID the concept id of the matching term 2013-08-31 14:45:26.737 UTC definition Extra information about this term that will help the user decide which concept id fits the best the input query 2013-08-31 14:45:15.289 UTC name HTT 2013-08-31 14:44:43.360 UTC the name of the matching term 2013-08-31 14:44:40.186 UTC getConceptSuggestionsFromTermparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.WSDLActivity http://sequenomics.biosemantics.org/ConceptProfileMiningService?wsdl getConceptSuggestionsFromTerm net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetConceptSuggestionsFromTerm_inputcutOffValue0term0output00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity cutOffValue 0 'text/plain' false term 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getConceptSuggestionsFromTerm" name="parameters" qname="{http://services.conceptprofilemining.lumc.nl/}getConceptSuggestionsFromTerm"><s:elements><s:basetype optional="false" unbounded="false" typename="int" name="cutOffValue" qname="getConceptSuggestionsFromTerm&gt;cutOffValue" /><s:basetype optional="true" unbounded="false" typename="string" name="term" qname="getConceptSuggestionsFromTerm&gt;term" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetConceptSuggestionsFromTerm_outputinput0return00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false return 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getConceptSuggestionsFromTermResponse" name="parameters" qname="{http://services.conceptprofilemining.lumc.nl/}getConceptSuggestionsFromTermResponse"><s:elements><s:complextype optional="true" unbounded="false" typename="conceptTable" name="return" qname="getConceptSuggestionsFromTermResponse&gt;return"><s:elements><s:arraytype optional="true" unbounded="false" wrapped="true" typename="&gt;conceptTable&gt;conceptRows" name="conceptRows" qname="conceptTable&gt;conceptRows"><s:elementtype><s:complextype optional="false" unbounded="false" typename="conceptWrapper" name="" qname="{http://services.conceptprofilemining.lumc.nl/}conceptWrapper"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="conceptId" qname="conceptWrapper&gt;conceptId" /><s:basetype optional="true" unbounded="false" typename="string" name="name" qname="conceptWrapper&gt;name" /><s:basetype optional="true" unbounded="false" typename="string" name="definition" qname="conceptWrapper&gt;definition" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetConceptSuggestionsFromTerm_returninput0conceptRows00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false conceptRows 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="true" unbounded="false" typename="conceptTable" name="return" qname="getConceptSuggestionsFromTermResponse&gt;return"><s:elements><s:arraytype optional="true" unbounded="false" wrapped="true" typename="&gt;conceptTable&gt;conceptRows" name="conceptRows" qname="conceptTable&gt;conceptRows"><s:elementtype><s:complextype optional="false" unbounded="false" typename="conceptWrapper" name="" qname="{http://services.conceptprofilemining.lumc.nl/}conceptWrapper"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="conceptId" qname="conceptWrapper&gt;conceptId" /><s:basetype optional="true" unbounded="false" typename="string" name="name" qname="conceptWrapper&gt;name" /><s:basetype optional="true" unbounded="false" typename="string" name="definition" qname="conceptWrapper&gt;definition" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokereturn_conceptRowsinput0conceptRows11net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false conceptRows 1 l('text/xml') 1 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:arraytype optional="true" unbounded="false" wrapped="true" typename="&gt;conceptTable&gt;conceptRows" name="conceptRows" qname="conceptTable&gt;conceptRows"><s:elementtype><s:complextype optional="false" unbounded="false" typename="conceptWrapper" name="" qname="{http://services.conceptprofilemining.lumc.nl/}conceptWrapper"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="conceptId" qname="conceptWrapper&gt;conceptId" /><s:basetype optional="true" unbounded="false" typename="string" name="name" qname="conceptWrapper&gt;name" /><s:basetype optional="true" unbounded="false" typename="string" name="definition" qname="conceptWrapper&gt;definition" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeconceptRows_conceptRowsinput0conceptId00definition00name00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false conceptId 0 'text/plain' 0 name 0 'text/plain' 0 definition 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="conceptWrapper" name="" qname="{http://services.conceptprofilemining.lumc.nl/}conceptWrapper"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="conceptId" qname="conceptWrapper&gt;conceptId" /><s:basetype optional="true" unbounded="false" typename="string" name="name" qname="conceptWrapper&gt;name" /><s:basetype optional="true" unbounded="false" typename="string" name="definition" qname="conceptWrapper&gt;definition" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetConceptSuggestionsFromTermparametersgetConceptSuggestionsFromTerm_inputoutputgetConceptSuggestionsFromTerm_inputcutOffValuecutoffgetConceptSuggestionsFromTerm_inputtermtermgetConceptSuggestionsFromTerm_outputinputgetConceptSuggestionsFromTermparametersgetConceptSuggestionsFromTerm_returninputgetConceptSuggestionsFromTerm_outputreturnreturn_conceptRowsinputgetConceptSuggestionsFromTerm_returnconceptRowsconceptRows_conceptRowsinputreturn_conceptRowsconceptRowsconceptIDconceptRows_conceptRowsconceptIddefinitionconceptRows_conceptRowsdefinitionnameconceptRows_conceptRowsname 488a9ad5-86fa-4d8a-ae81-8a040fab7197 2013-08-31 14:45:24.104 UTC ebd91369-6c22-4ee9-8b56-003e12062efd 2013-08-31 14:43:44.858 UTC 3e424807-c087-4644-8c78-0af7e451f99c 2013-08-31 14:45:42.585 UTC Get concept suggestions from term 2013-08-31 14:36:49.133 UTC 28b58179-6748-450e-b59c-330bac6d3a0b 2013-08-08 08:39:39.512 UTC This workflow suggests concept ids that match the query term. The user can run this workflow with any term of interest as for example "human", "htt", "Transcription" etc, and will get suggestions for concept ids together with descriptions. Then can choose the concept id that matches the best to her/his needs and use it to the rest of the CPA workflows. 2013-08-31 14:43:47.715 UTC 206ae4ea-6d43-4e4d-82c3-50fa1a48fa9e 2013-08-31 14:44:30.209 UTC