Generate_Spectral_LiworkingDir00pThreshold00libraryName00databaseFastaFile00libraryXTandem_stdoutSpectraST_C_stdoutPeptideProphet_stdoutlistFilesdirectory0list11 // This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 Unported License (CC BY-SA). // Copyright© 2012 Yassene Mohammed // Please send your feedback, questions, comments and suggestions for improvement to y.mohammed@lumc.nl // 14 November 2012 // Yassene 2012-11-14 12:49:05.166 UTC net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity directory 0 text/plain java.lang.String true list 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSpectraST_CpThreshold0libraryName0outputDirectory0pathToPepXML1pathToTPPBinDir0outputFile00stdout00 This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 Unported License (CC BY-SA). Copyright© 2013 Yassene Mohammed Please send your feedback, questions, comments and suggestions for improvement to y.mohammed@lumc.nl 14 May 2013 Yassene Mohammed 2013-08-16 13:38:01.750 UTC net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity pathToPepXML 1 text/plain java.lang.String true libraryName 0 text/plain java.lang.String true pThreshold 0 text/plain java.lang.String true outputDirectory 0 text/plain java.lang.String true pathToTPPBinDir 0 text/plain java.lang.String true outputFile 0 0 outputFileObject 0 0 stdout 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 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net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokePeptideProphetminPeptideLength0minProbability0pepxmlFile0fastaFile0pathToTPPBinDir0outputFile00stdout00net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity pepxmlFile 0 text/plain java.lang.String true pathToTPPBinDir 0 text/plain java.lang.String true minProbability 0 text/plain java.lang.String true minPeptideLength 0 text/plain java.lang.String true fastaFile 0 text/plain java.lang.String true stdout 0 0 outputFile 0 0 outputFileObject 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokepathToTPPBinDirvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity /usr/local/tpp_4_6_1/bin/ net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 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net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokelistFilesdirectoryworkingDirSpectraST_CpThresholdpThresholdSpectraST_ClibraryNamelibraryNameSpectraST_CoutputDirectoryworkingDirSpectraST_CpathToPepXMLPeptideProphetoutputFileSpectraST_CpathToTPPBinDirpathToTPPBinDirvalueXTandempathToRunTandemJarpathToRunTandemJarvalueXTandemfastaFiledatabaseFastaFileXTandempathToTPPBinDirpathToTPPBinDirvalueXTandemmzxmlFilelistFileslistPeptideProphetminPeptideLengthminPeptideLengthvaluePeptideProphetminProbabilityminProbabilityvaluePeptideProphetpepxmlFileXTandemoutputFilePeptideProphetfastaFiledatabaseFastaFilePeptideProphetpathToTPPBinDirpathToTPPBinDirvaluelibrarySpectraST_CoutputFileXTandem_stdoutXTandemstdoutSpectraST_C_stdoutSpectraST_CstdoutPeptideProphet_stdoutPeptideProphetstdout b2669395-3a91-4a95-b591-8606dfcd013d 2012-11-14 08:31:03.517 UTC 6a3c659d-904c-4344-bcb5-b147f33db19d 2012-11-15 17:44:00.349 UTC 30e2222d-1a96-4d85-a403-2e854c5bce91 2012-11-15 18:12:52.854 UTC 8c14c784-3ea7-41e9-bd05-b5a333d2a034 2012-11-15 14:21:27.649 UTC 2eb121d0-585a-458c-8b9c-7b2c2c4b0ce8 2012-11-14 12:17:01.307 UTC 99cb2390-7374-416f-bed1-c8892b4daf0e 2013-08-16 13:37:37.218 UTC 358639f6-f412-45d7-a5da-8dc8edf9471d 2012-11-14 08:35:42.248 UTC ab68adc7-e4d4-4447-8d8b-5493d51a18e6 2012-11-15 17:37:28.248 UTC f7fa3f8d-0cd2-43b0-81bf-17b4ca93f138 2012-11-14 12:28:56.309 UTC b8580e1a-4db6-40bc-a32c-68a212db5bef 2012-11-14 08:31:23.673 UTC This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 Unported License (CC BY-SA). Copyright© 2012 Yassene Mohammed Please send your feedback, questions, comments and suggestions for improvement to y.mohammed@lumc.nl 14 November 2012 Yassene 2012-11-15 17:43:40.809 UTC ce6413ba-7b34-4e37-8044-7497236bdc41 2013-02-06 14:33:11.656 UTC 2b3ab101-96da-4358-a082-2e4477ab1d93 2012-11-15 16:26:35.12 UTC 599a827a-9898-47e6-a401-983084a91399 2012-11-14 12:29:11.284 UTC a2bbbf80-e3ee-424b-9072-3dff499263e0 2012-11-21 18:50:55.74 UTC 35dab059-e7e0-4c87-9c8d-d86749fedb17 2012-11-15 17:11:27.383 UTC 41512887-6062-4849-a4a2-341f0f8601ed 2013-08-16 13:38:04.427 UTC ff8f62d5-6c10-49f9-a4ac-926162f709e4 2012-11-14 12:49:53.791 UTC 6c29739e-4dd6-44c9-aa65-17a269bbb71e 2012-11-13 17:18:29.265 UTC f8fe1eda-f222-4578-a3b5-1413e8ae5fe9 2012-11-15 17:32:14.974 UTC 2cb41f55-b0c4-48a8-a709-ec1616b4e058 2012-11-22 13:17:12.492 UTC 6ba9321f-68b8-44ec-b1dd-00292d899c24 2012-11-13 17:22:45.196 UTC d7273d22-4c9a-4354-9485-bb9bc30d9750 2012-11-14 12:55:40.559 UTC 7af74c92-29f3-48bc-8015-d4153650dbee 2012-11-15 17:45:02.385 UTC b8ea266d-58f0-4fb5-9dcf-57c80ac33175 2012-11-15 18:13:38.345 UTC Yassene Mohammed 2012-11-14 12:50:19.616 UTC bcaf9532-3aad-4983-8173-25276fa2f811 2012-11-15 14:53:49.112 UTC 49e97742-277a-4070-8244-68baf71c4f6f 2012-11-14 13:09:36.57 UTC a8a58aaf-3fde-4a48-9d34-5545ca3b87de 2012-11-22 13:31:46.37 UTC b348ca4b-4510-4726-a3e0-d4a3e17fbaee 2012-11-14 13:07:10.981 UTC 9891559c-fb22-43a0-b51b-c0d2fa138d69 2013-08-16 13:38:33.347 UTC 53c85e01-08f4-431e-802b-ae87c15fb9a8 2012-11-15 14:54:32.271 UTC ee82178a-3ec1-45c3-9bfc-e595667e3334 2012-11-15 16:48:17.775 UTC dc11e5ad-a452-4c02-8a22-6b01016a6cfe 2012-11-15 18:03:16.3 UTC 0071e83d-a59b-4b2a-baea-fc6da45144f8 2012-11-14 12:21:45.646 UTC 6f23838a-1620-4e2b-ba33-0c2e425183b4 2012-11-15 17:04:42.143 UTC 47623b46-8456-41d5-a816-8dcffc104cb4 2012-11-14 14:54:44.876 UTC 152d37cd-4733-42fb-894c-06a2a2677051 2012-11-23 09:26:59.445 UTC 0f71cffc-210f-4d33-b55a-d385236482a9 2012-11-22 13:28:29.188 UTC 1caff6dc-783b-4ccd-8180-d6482848a707 2012-11-13 17:20:15.140 UTC 487583bb-0255-4f6a-a880-8e14ef0661e4 2012-11-13 17:21:42.579 UTC Generate Spectral Library 2013-08-16 13:38:26.163 UTC 0a0cf4dc-3c4f-4576-b072-9dcde7dac06a 2012-11-14 13:34:22.684 UTC