X!Tandem and PeptideProphet on the Grid
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The workflow performs the execution of X!Tandem and PeptideProphet from the TPP toolbox on the Grid. The execution is performed by the UNICORE Plugin for Taverna. mzXMLDecomposer/Composer is used to run the execution of X!Tandem in parallel. extract_values extract relevant information from thetandem.interact.pep.xml File. The file can then remain on the remote storage.
Created: 2013-08-13
| Last updated: 2013-09-04
Credits:
Sonja Holl
Yassene
Magnus Palmblad
Attributions:
de Bruin et al. Workflow 1
Cloud Parallel Processing of Tandem Mass Spectrometry Based Proteomics Data: X!Tandem
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