BioVeL_ESW___ENM_Stainput100http://biovel.iais.fraunhofer.de/biostif/data/present.img2013-07-11 14:45:25.245 UTCInput of the current layer. The difference will be computed as predictionLayer - currentLayer
Expected as input files are raster images as a URL from openModeller created by an ENM workflow. A file upload is not possible!
Supported formats are:
- ERDASImagine (.img) files with a value range 0 - 100, noData value 101
- GeoTIFF (.tif) files with a value range 0 - 254, noData Value 255
Input files with a different extent will be intersected to a common extent and the current layer (inputfile 1) will be resampled to the prediction layer (inputfile 2) using the "nearest neighbour" sampling method2013-08-14 21:38:22.720 UTCinput200http://biovel.iais.fraunhofer.de/biostif/data/prediction.img2013-07-11 14:56:32.177 UTCInput of the prediction layer. The difference will be computed as predictionLayer - currentLayer
Expected as input files are raster images as a URL from openModeller created by an ENM workflow. A file upload is not possible!
Supported formats are:
- ERDASImagine (.img) files with a value range 0 - 100, noData value 101
- GeoTIFF (.tif) files with a value range 0 - 254, noData Value 255
Input files with a different extent will be intersected to a common extent and the current layer (inputfile 1) will be resampled to the prediction layer (inputfile 2) using the "nearest neighbor" sampling method2013-07-05 15:24:38.787 UTClabel_species00my_spezies_name2013-03-11 11:05:06.9 UTCEnter your favorite name for the species used in the "changes" output table only2013-06-28 10:03:07.153 UTClabel_difference_file00my_diff_filename2013-03-11 11:19:08.870 UTCEnter your favorite name for the created difference file, this will be stored on Geoserver
NOTE: Please use only alphanumeric characters (space and hyphen), all other characters will be replaced.
During the storage a timestamp will be added to the filename2013-06-28 11:29:23.579 UTCPNG_output_size00Size of the output PNG's in pixels. 2013-07-05 15:13:06.44 UTC4002013-07-08 09:27:47.865 UTCchangesXX,Overall_coverage,in_the_Raster_output,DIFF_coverage,Overall_intensity,absolute_,Overall_intensity,percent_,DIFF_intensity_absolute,DIFF_intensity_percent
species,2012,2050,2050-2012,2012,2050,2012_%,2050_%,2050-2012,2050-2012_%
my_spezies_name,14.2127659574468,14.5565957446809,0.343829787234043,11.378896882494,5.17799953585519,4.47988066239921,2.03858249443118,-6.20089734663882,-2.441298167968042013-07-05 14:19:33.366 UTCThis file contains the changes computation in the submitted files:
Overall coverage in the input raster files and their difference
overall_coverage = ((ncell(x)-cellStats(x, 'countNA')-count(x,0))/(ncell(x)-cellStats(x, 'countNA')))*100
difference = coverage_prediction - coverage_current
Overall intensity absolute and in percent and their difference
overall_intensity = (cellStats(x, sum)/(ncell(x)-cellStats(x, 'countNA')))
difference = intensity_prediction - intensity_current2013-08-14 21:44:18.321 UTCcurrentLayerPngPNG overview of the input current layer with a background country borders based on the TDWG level4 layer
Used color ramp:
ERDASImagine file:
breakpoints = (0,1,25,50,75,100)
GeoTIFF file
breakpoints = c(0,2,63,127,190,254)
colors = c(rgb(1.0,1.0,1.0),rgb(0.996,0.898,0.851),rgb(0.988,0.682,0.569),rgb(0.984,0.416,0.290),rgb(0.871,0.176,0.149),rgb(0.647,0.059,0.082))2013-08-14 21:48:52.901 UTCdiffImgImage file of the difference layer, the format is the same as the input files: ERDASImagine or GeoTIFF2013-06-28 11:08:40.751 UTCdiffLayerPngPNG overview of the output difference layer with a background country borders based on the TDWG level4 layer
Used color ramp:
ERDASImagine file:
breakpoints = c(-100,-70,-50,-25,-1,1,25,50,70,100)
GeoTIFF file
breakpoints = c(-254,-190,-127,-63,-2,2,63,127,190,254)
colors = c(rgb(0.396,0.310,0.635),rgb(0.196,0.533,0.741),rgb(0.4,0.761,0.647),rgb(0.671,0.867,0.643),rgb(1.0,1.0,1.0),rgb(0.992,0.682,0.380),rgb(0.957,0.427,0.263),rgb(0.835,0.243,0.310),rgb(0.620,0.004,0.259))2013-08-14 21:53:49.615 UTCmatrix_diffMatrix table of the output raster file for the difference layer. The file is in ArcGRID format2013-08-14 21:55:03.515 UTCmatrix_xMatrix table of the input raster file for the current layer, The file is in ArcGRID format2013-08-14 21:54:45.415 UTCmatrix_yMatrix table of the input raster file for the prediction layer,. The file is in ArcGRID format2013-08-14 21:55:22.155 UTCpredictionLayerPngPNG overview of the input prediction layer with a background country borders based on the TDWG level4 layer
Used color ramp:
ERDASImagine file:
breakpoints = c(0,1,25,50,75,100)
GeoTIFF file
breakpoints = c(0,2,63,127,190,254)
colors = c(rgb(1.0,1.0,1.0),rgb(0.996,0.898,0.851),rgb(0.988,0.682,0.569),rgb(0.984,0.416,0.290),rgb(0.871,0.176,0.149),rgb(0.647,0.059,0.082))2013-08-14 21:48:02.361 UTCsummaryXX,ncell,mean,median,cv,sd,min,max,countNA
currentLayer,29375,4.47988066239921,0,287.401663188998,12.8752515326176,0,71.259842519685,16448
predictionLayer,29375,2.03858249443118,0,265.962928385008,5.42187369973329,0,35.0393700787402,16448
diffLayer,29375,-6.20089734663882,0,-422.830563923041,26.2192892190818,-131,76,164482013-07-05 14:20:01.606 UTCThis file contains the summary for the current, prediction and the difference layer:
- Number of cells (ncell),
- Mean and median value (mean,median)
- Coefficient of variation (cv)
- Standard deviation (sd)
- current minimal and maximal values (min,max)
- Number of noData values in file (countNA)2013-08-14 21:36:53.640 UTCBioSTIF_URLURL to BioSTIF with the difference layer2013-08-14 21:33:40.550 UTClogfileThis file contains a overview about the used files and the computation2013-07-05 14:20:55.736 UTCcomputation start: 2013-07-05 16:11:22
File 1 input format: GeoTIFF (.tif)
value range: 0 <> 254, noData 255, current values: min 0, max: 181
File 2 input format: GeoTIFF (.tif)
value range: 0 <> 254, noData 255, current values: min 0, max: 89
input files cropped: NO
input files normalized: NO
output file format: GeoTIFF (.tif)
value range: -254 <> 254, noData: 255, current values: min -131, max: 762013-07-05 14:21:02.766 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15:01:21.418 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ESW - ENM Statistical Workflow with raster difference computation2013-08-18 08:55:37.950 UTC2767e285-a9eb-417f-9710-1a26e640dd142013-07-12 10:16:20.910 UTCead77f1b-ed72-470c-ad28-d30c12a5fbdc2013-08-14 22:12:56.2 UTC498067df-a761-42a3-b200-71c6faaf800d2013-03-11 16:08:30.98 UTC40cee2b9-1e39-4edd-890d-fc00e28b6ca52013-06-28 10:00:58.898 UTCdcfaf14b-616c-4bf1-ac3f-667cc715abab2013-06-28 13:16:35.701 UTC749960ec-d3a1-4a0b-9a3f-6ea2cae4318a2013-03-11 15:55:50.351 UTC8d26c06f-7f35-402d-925c-c6db777a94e72013-03-11 13:24:15.470 UTCef4715db-ab21-47ae-9aa1-5f2f00ec392d2013-07-05 15:13:24.744 UTCd61af2d3-e99f-4756-89b5-a8f18a177add2013-07-05 14:23:07.416 UTCb0dfcece-1645-4218-ab93-eccaa571a8762013-06-28 11:07:19.157 UTC6c491f98-4e79-40c5-8024-3aff606e62152013-06-28 09:08:08.730 UTCc1b65d16-8bc5-4505-bf7d-7e9f29e9b78e2013-07-05 14:26:16.836 UTC87e951cf-0a7c-4a31-81d3-9a646e3a13cb2013-04-26 13:59:03.593 UTC3ae9ba9e-b180-4289-8251-f29382358d6f2013-07-05 13:57:36.605 UTC559d3681-e7a1-4c3d-be77-69a2426e82982013-08-14 21:55:25.136 UTC18768d3e-f70b-4ffb-b3ee-b558b216184d2013-07-12 14:54:11.251 UTCe8e24c5d-5415-4f91-af7a-d9cab46f3abc2013-06-28 09:33:41.392 UTC11381e84-c35d-4a95-bbab-18c217bbba842013-06-28 11:23:23.671 UTC64a9cf11-14af-4fa5-8baa-b98c9e3610ea2013-06-28 09:53:37.198 UTCc13d9b96-1292-4795-820b-e1531300d54f2013-04-26 14:01:41.909 UTCea14e83c-1fa0-47ae-b582-a0f2827cbe6d2013-07-11 15:37:41.338 UTCa72e9906-b318-412c-b48e-d34e955bb7f52013-03-11 20:14:30.369 UTCe53c932d-2b54-42ad-be84-bef81ac3937a2013-04-16 14:59:07.435 UTC2863d399-8add-4ef8-a3d4-b125336351092013-07-11 14:56:33.754 UTCef880e0a-d905-4861-a13f-fdab07d82b5b2013-03-14 13:21:53.611 UTC48ec37cf-ed7d-4fd2-83c6-6dccd1ae1ffc2013-07-11 15:07:12.533 UTC4b91c753-1192-4d6a-8630-670745ae19362013-03-14 12:48:30.758 UTC762d98fc-52ca-4cf7-a7dc-57cc628610e62013-04-26 13:36:38.977 UTCf967e8dc-6215-466d-9603-5efefeefca9a2013-06-27 15:29:59.331 UTC66c6f3af-5223-4f5b-b88b-bded482acf812013-06-28 11:06:03.521 UTC28dff200-4cf7-4a9b-bf0f-467b661b97852013-07-05 14:42:01.908 UTC896eb84c-7939-4295-a8be-0131a093e4372013-04-16 13:30:39.37 UTC7e391b68-8539-48a3-b882-b52cd675298d2013-03-11 16:17:33.81 UTC679ab56e-c9ec-48ca-a242-47a7b2ab4bb32013-07-12 10:09:42.709 UTCfbb4754d-eace-4de8-9d1f-bb22d0e7c30f2013-03-11 16:19:29.756 UTC422c5913-daa4-4a75-b41d-b66a5c964c872013-03-13 15:58:22.62 UTCa77bce96-9820-4ac1-8786-973d2999aa532013-04-26 13:47:18.125 UTC97b0d10c-6032-4f51-b512-ab08db6ce10d2013-06-27 15:31:46.76 UTC5d5218ed-5e94-46dd-b81c-b11c013603c52013-03-13 16:19:13.56 UTCdadc28dc-e1a1-4e8a-8c24-8183965f1f222013-04-24 15:29:50.193 UTCd38a92cf-f2fb-4496-91f8-9d5dcbcd6a452013-06-28 09:36:00.463 UTC7f23f077-7096-49c7-8a54-b390b02139cb2013-06-27 15:41:50.989 UTCf4b1289f-272d-4c5d-b930-e72c7fefef202013-06-28 12:14:59.235 UTC4498dde1-7c04-409a-8833-b0963a8e8b902013-07-05 15:24:40.267 UTCe3812b18-4830-4721-9221-66b8d63fcb4a2013-07-11 14:45:28.125 UTC909f8e8c-aaeb-4c04-a2d7-563c8bb9b1d12013-04-26 13:35:55.564 UTCc75a2395-e579-4a9f-9351-00432ab2b3782013-07-05 14:26:38.476 UTCThe ENM Statistical Workflow (ESW) allows the computation of the extent and intensity of change in species potential distribution through computation of the differences between two raster layers using the R statistical environment (R Core Team 2013). The difference file is computed from two input files (in this case present projection and 2050 projection) coming from the Ecological Niche Modelling (ENM) Workflow (http://www.myexperiment.org/workflows/3355).
The difference between each corresponding raster cell value is computed and stored in the difference file, regardless of the input files’ geographical extent and origin. If the files have a different geographical extent and/or origin the raster-diff workflow automatically crops them to the same extent and resamples the values using the “nearest neighbour” method, resulting in a perfect cell match between the two rasters. The resulting value in the difference file ranges from the negative and positive maximum values of the input files to represent the maximum possible change in both directions.
The diff result values are classified into six positive and negative classes. The predicted differences are presented for each species as a heat map, where cells with colors from green to red indicate an increase and from green to blue a decrease of predicted potential for a species. The workflow enables the computation of overall coverage, overall intensity and the difference in intensity or coverage between two raster layers. Overall coverage is computed as the percentage of raster cells with values >0, and overall intensity is computed as the sum of all valued cells divided by the number of raster cells. Summary statistics for the raster layers are also provided: number of raster cells, mean intensity, median, CV, SD, Min value, Max value and number of cells outside the mask.
This workflow store the computed difference image to the BioVeL Geoserver and create PNG overwiews contains the input and output files. The difference result image could be shown in the BioSTIF web visualisation client
The PNG overview will be created with these values (corresponding to the Geoserver style)
ERDASImagine file:
breakpoints = c(0,1,25,50,75,100)
GeoTIFF file
breakpoints = c(0,2,63,127,190,254)
colors = c(rgb(1.0,1.0,1.0), rgb(0.996,0.898,0.851), rgb(0.988,0.682,0.569), rgb(0.984,0.416,0.290), rgb(0.871,0.176,0.149), rgb(0.647,0.059,0.082))
Expected as input files are rthose aster images as a URL reference e.g. output files from openModeller created by an ENM workflow.
*A file upload into the workflow is not possible, only a reference to the input file as URL*
Supported formats are:
- ERDASImagine (.img) files with a value range 0 - 100, noData value 101
- GeoTIFF (.tif) files with a value range 0- 254, noData Value 255
Input files with a different extent will be intersected to a common extent and the current layer (inputfile 1) will be resampled to the prediction layer (inputfile 2) using the "nearest neighbor" sampling method.
The difference layer will be computed as inputfile_2 - inputfile_1
For working with the PSW in a own localhost an R instance should by installed on a own machine (http://cran.r-project.org/). For the computation the followed extensions must be installed: rgdal, raster and rserve. Rserve must be started before the computation.
--------------------
This workflow has been created by the Biodiversity Virtual e-Laboratory (BioVeL http://www.biovel.eu/) project. BioVeL is funded by the EU’s Seventh Framework Program, grant no. 283359.2013-08-18 08:59:03.168 UTC58896293-0a5b-4301-9590-35cbedd386bb2013-08-14 21:33:44.620 UTCe93d88c6-a301-46aa-89fc-38812983adea2013-07-05 15:17:23.70 UTCbdf8c4e0-54f3-44d5-81f7-9b0ca2d828d52013-07-05 14:19:35.336 UTC24aeeebb-c39f-44b3-8f23-57712c7c1c452013-07-05 14:20:16.206 UTCfd323076-1122-434c-8da6-7d18c8f0d9ea2013-08-14 21:48:56.641 UTCae7b122d-61ff-487a-976f-9a716d9bcf2b2013-06-27 15:37:55.301 UTC9172a80d-c563-4431-8cbe-37e592e2225b2013-03-11 11:22:23.230 UTCd28f9262-95af-4a7f-aac4-5df26de595052013-06-28 11:34:08.318 UTCfb17bb87-1a31-44cb-9828-78d3ad48b4442013-03-11 16:07:32.431 UTCb48fd7ba-c771-4c6a-a5a7-6c744b9574212013-07-12 10:15:53.12 UTC006e8adb-afbf-468c-86a8-f96b980218e52013-06-26 11:33:08.11 UTCd8443646-6442-4a92-9847-e69e56cf335f2013-06-28 11:17:29.99 UTC76bf5617-83e8-48f4-b83c-de55e17cb4c62013-04-24 15:18:22.785 UTC464ba3ea-2de2-41bd-971b-fd4ad55364ba2013-03-11 13:11:47.130 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UTC396ba9fb-c087-4bd3-a910-c5cf1d0059852012-11-20 18:18:25.86 UTC28dc25fa-f1f0-4985-b6f4-09c04f41947b2013-06-26 15:26:03.620 UTC069b9a50-390f-4a3e-921b-36d26a6aa30f2013-01-28 16:11:11.806 UTCb36dfde6-5d34-4f98-9c24-ec47624af41c2012-11-19 17:13:44.447 UTCd9fb1dd3-f13e-4f51-a40a-e07e13ac51692013-01-28 17:53:49.909 UTC130777fd-2d0e-4cbe-b3b5-913a0e47494a2013-07-04 12:26:37.482 UTCb617eda5-f05b-4471-9788-327491178bd62013-06-27 13:13:36.422 UTC70bc12d1-39b7-4d8d-a55b-52915677759f2012-11-22 14:30:08.476 UTC66d50af2-8d1d-421b-88a1-5c4e706d33272012-11-14 14:39:19.541 UTC53a88981-b26f-4369-ad14-2739f7f724a62012-11-15 12:13:53.143 UTC53103de3-9c57-4a2d-9480-d0b501db59982012-11-20 18:01:32.387 UTCdb9fbc2e-09c8-4b3c-88a4-df867cba62242012-11-14 15:01:23.817 UTC04690b6a-3e0a-48ea-8f5e-9d451dbe10112013-01-09 17:39:52.501 UTCf8e997d1-db4f-46f3-befe-fdd2365e147b2012-11-14 15:19:24.385 UTCa90ba418-46f4-4027-938f-650a2893c8242013-02-12 09:54:01.284 UTC2ae2c447-6ae8-4dad-92ff-eae7b1b32dab2012-11-19 15:41:32.377 UTCf56221d5-27b4-4aa6-9813-200e563ad27c2013-07-04 14:19:46.692 UTCccbd3579-b2a3-45ed-adbc-2f7c88ff12f92012-12-13 14:38:18.119 UTC908ddef5-8634-4684-ae10-009b21d5982c2013-07-03 13:29:01.626 UTCca41aef5-14d4-435e-95f9-f46a5373fb1b2013-01-22 16:42:35.433 UTCb7736c6e-e8f3-470a-a956-7fbbdc634df62012-11-14 15:02:33.65 UTC6ec75d26-ece5-44c8-8288-c0f6b1f17a552013-01-30 12:47:55.986 UTC583d1585-e2ac-4269-b676-8768beac9cfb2013-07-05 14:07:14.489 UTC95b97cb8-932f-478d-9cc9-685307c066442013-06-27 11:37:52.416 UTC982336ea-39a1-4f4f-9bc1-3a00786f91962013-07-04 12:28:35.99 UTC40f0bc35-fff6-413e-9d1f-7c0a143a962b2012-11-20 21:32:32.40 UTCb37b3edf-1664-41c3-880b-f897363eb1202012-11-20 18:16:26.290 UTC6631bd0e-2d94-4a2a-a8b4-eee18e3f634d2012-11-15 16:33:55.390 UTCf56929ff-73bc-4fd6-bf36-68d4f5627cbb2013-06-27 11:30:56.96 UTCc62a2f76-baf0-45b7-a126-48ba290e9faa2013-06-19 14:40:07.602 UTCf1dea1a6-9642-4403-8945-25f521bf629e2012-11-19 14:07:24.379 UTCc2b3a1d4-022b-4c7a-a39c-4715c657bc602012-11-14 12:34:02.972 UTC7c8db44d-f9a4-4292-b26b-2e5bc5cb27b72012-11-14 14:42:15.119 UTCc570ef2a-a8f7-4e0f-bab2-d47bb899c5b12012-11-14 12:17:01.904 UTCd3edc4e9-aa3a-4cad-9e0d-8b198e93995b2012-11-19 14:10:49.234 UTCthis workflow computes an raster diff from teo GeoTIFF or ERDASImagine files and some statistics about the files and their difference. For more about the input and output files see the BioVeL PSW workflow description2013-07-04 15:31:47.508 UTC53c2fba3-0ee2-4e8b-b828-045059c84f552012-11-14 15:24:29.725 UTCdbfaef27-2d5c-41e5-96e4-9ecfb3c9f4fe2013-06-26 15:29:42.31 UTC166ed6be-9595-4997-81ba-0e8f6dcc717b2012-11-14 14:59:07.242 UTC3c296a4d-817c-488d-909b-98bc74d0c29a2013-06-26 13:31:04.723 UTCeb893a34-d99f-426a-83c1-3e15afa28f842012-11-21 09:59:48.922 UTC150e0bf7-f439-4e3b-987c-975de0fc39192012-12-13 14:42:33.242 UTCdc38cee4-6e17-4d6a-bb72-6aa171ed04192013-06-27 13:16:50.314 UTC8f106413-1002-4c78-b8e9-897c775db4eb2013-01-30 14:31:39.25 UTC64b791aa-5047-45fe-81fd-9851bdf9c4842013-03-11 11:06:17.326 UTC62498bb8-69e4-4e04-8a51-b9d7360683b72013-06-27 13:22:34.452 UTC1090c095-9c02-4797-a14b-aab1a7bed1f72013-01-30 12:22:25.708 UTCe7f049de-17c9-4b30-96c1-d9c299a1534d2012-11-14 14:54:56.310 UTC35332a69-e837-4a8c-b829-917c263ff10c2012-11-19 16:50:23.829 UTC0182082c-ce02-4988-aede-e9d0fd3dc13c2012-11-20 21:47:54.292 UTC132d5cdf-969b-40b8-a81f-0a30766eb8942012-11-14 15:37:24.763 UTC34466ee8-849b-4ba2-8120-cdc2c3fffaaf2013-01-30 14:57:07.495 UTCa94c3fb6-ed02-4c1f-a198-9ba32d5b59dc2012-11-20 18:55:37.143 UTCa7175bf2-c336-4980-ae68-7813baa998022013-01-25 16:47:37.331 UTCf962b317-e3cb-4bc9-9238-d0d54c851c232012-11-14 16:49:36.609 UTCd0f5522a-898b-4575-9dab-14a009f1981e2012-11-14 15:11:26.380 UTCc0edc164-bd9a-44df-9f26-a317758c869b2012-11-19 15:47:56.628 UTCd4c1d77c-9cae-42ef-a651-3ec44895d0662012-11-20 21:44:50.159 UTC79654226-f634-48e4-bea0-3adbe35889732012-11-15 14:54:58.513 UTC0f064ac4-7a70-442b-b85d-b631e705d78b2013-02-12 09:46:54.725 UTC01a6a8ac-9ae6-4c57-98f4-491bf210d4fd2013-01-28 18:37:06.688 UTC183c4d01-5027-4885-8380-24ad11ad96872013-07-03 13:31:32.945 UTCf909e5be-25e1-4ac3-a889-10202a3bd5442012-11-19 15:39:37.762 UTCe2d6aafd-e3b9-41d5-aa02-44b0e9245f762013-07-03 15:43:00.294 UTC254f283b-694b-486e-8aa1-c479bdd997672013-07-04 14:58:41.883 UTC86a41c7a-3e8d-4bbf-8981-902468acd8e52012-11-15 12:22:22.872 UTCa9d1b9e5-7481-4e43-a784-553890639d2a2012-12-17 10:40:00.928 UTC241e16bd-907d-454e-ae98-49fdf6bfd9522012-11-19 15:36:10.558 UTCea0e4b7b-2fb1-4764-bcb4-a700194562f72012-11-20 19:32:35.98 UTCe0794232-6abe-4714-ac1d-65c0aae647152012-11-06 13:30:58.883 UTCe3b5ae2e-b92b-4206-a3a4-b5454f6182c22013-01-30 14:34:42.403 UTC3e5816ef-60bb-4cbe-af0d-9ed20ef057202012-11-22 14:22:47.294 UTC793bc6c6-2c0b-4682-8ec9-cf7f1dc9bb562013-06-27 12:20:09.943 UTC426b900c-0a58-49bf-a99d-88e59c59cb3d2012-11-15 16:49:48.889 UTCaba85fe9-ed56-4eb7-9379-7ee95204cc842012-11-06 14:51:42.512 UTCbc718f58-f0a6-4e54-a31e-095f1db9ed4f2012-11-19 16:00:10.64 UTCa77d8e0c-5109-47df-859f-9baaf8362c7d2012-11-15 12:07:36.370 UTCdd56f23e-9b9f-41e8-a6d3-201b77ec7a712012-11-19 17:08:52.741 UTC1ea31560-fc4f-41ab-bfad-47df52e996c62012-11-20 19:19:44.272 UTC9de36979-7e7e-469b-aeba-bd1609a7285f2012-11-15 12:11:24.73 UTC153502f4-a3b4-4efa-a1bf-85e64a85d75b2012-11-20 18:53:19.654 UTCd799e60b-b1e9-4d9c-b206-525f810475182013-06-27 12:07:29.628 UTCf4a97049-177a-4156-b7e2-db929339df982012-11-20 18:59:17.503 UTCe558059b-c4b1-4aea-b0c1-4aa356f721f92013-06-27 13:14:30.530 UTC66d1a819-7835-4b17-9a5a-a11a6d85fd762012-11-22 14:39:21.634 UTCf497522c-8a53-4a3d-b19b-c74dd956e36d2012-11-19 17:04:28.844 UTC3c8d1a6f-05de-4586-ad88-92653ff6cb972013-01-30 13:22:55.381 UTC159ff88c-8f00-4e6d-951d-536763f730c72012-11-14 14:58:18.397 UTC9afb6db0-3920-445a-92e9-713e3d6bc2612012-11-06 14:43:34.735 UTC58515837-4874-4fed-bae4-4c98415dd04b2012-11-14 14:25:08.444 UTCa474faf5-e690-4848-b84e-deb30a6d13022013-07-12 10:08:13.516 UTCc8c501b4-96c4-479f-b8d4-c3df02bbe4c52012-11-14 16:29:19.301 UTCdc9b63e6-e183-49f3-8ab2-81abbe8686542013-06-17 10:11:42.78 UTCc3128548-ba82-453a-bca7-bb323a3ad4182013-07-04 14:40:36.812 UTC5662548d-6ec9-400e-b862-a5b8454217b22012-11-19 17:09:45.937 UTC8e745d46-19bf-4ea4-a378-c2cc06f812fd2012-11-19 16:32:29.143 UTC9067ac42-6752-470a-83f8-1de87e5b66882012-11-14 16:51:00.987 UTC5865a1bb-4b64-4c80-bdf9-b896d9aa3be92013-06-26 15:17:02.180 UTC04f55660-a379-4791-8145-c540a3535a4b2012-11-20 20:58:48.402 UTCc2e3a117-b99c-4fac-88bf-4fd2024822ac2013-01-28 17:43:49.356 UTCd222df84-f776-41ce-9a98-581494dbd5692013-01-30 14:50:49.263 UTC1b8a8d6d-9dda-4401-8ee7-74d28618501f2012-11-19 15:00:42.170 UTCc00bec6c-0218-4b0a-bad8-7e48c6fd7dfc2012-11-14 14:28:20.917 UTC045df9cf-c348-4819-91fb-c185b391c2ad2013-07-04 11:01:49.425 UTCf67501fb-5954-4ad7-b2bc-e957216bcf342012-11-19 16:01:41.238 UTC6d8b5e97-1bc0-4899-97f6-f786164aa94d2012-11-14 12:26:36.183 UTCfecf5e90-3350-47a0-b3e7-62fbc60fbd532013-06-27 11:41:06.327 UTC32248ff4-2e15-460f-9fc7-d3ccf96573912012-11-15 16:28:48.458 UTCb970adff-606b-4e2d-a242-be94f500a85b2013-07-05 15:09:33.373 UTC8f455042-60ca-4678-b04c-6dd41a098cb82012-11-06 15:19:05.967 UTCc45e2e05-3243-41a5-a8f2-7daa5065934c2012-11-20 20:40:26.589 UTC1473b3a3-ee6d-4b0a-9b46-a33712589d812013-01-24 17:12:57.542 UTCe10ab692-9caa-4cc0-bb3a-29b748f712a62013-01-30 12:46:07.480 UTC6d49c5b4-8601-42ce-91bd-27c55977bfca2012-11-19 16:04:53.737 UTC1c1a7111-a1eb-4ff0-be5c-07241f845c012012-11-14 12:28:47.210 UTCd08f92a8-8f0a-478c-96d3-09579f4443d92012-11-20 20:34:18.729 UTC28eebd67-1b47-4c9a-8224-bc0d839639762013-06-27 11:49:25.775 UTCa7c685c6-b65f-45ef-abe0-2d2c84051f812012-11-19 15:55:56.728 UTC0314dadd-a7f1-4ae6-8419-629190a99a262013-07-03 13:16:07.870 UTCc53733fd-981c-46f5-bc2e-9997e3a6100d2012-12-13 14:43:29.869 UTCbd34e8a6-9849-45cc-b2c0-a3faab010d922012-11-14 14:42:56.641 UTC63beae0f-9949-4d3a-80de-7c72b27425c52012-11-14 15:36:15.46 UTC6430f5ae-68cd-438d-a1bc-46635c7b80e82013-01-30 14:37:51.546 UTC2d4628fd-a541-433b-be1a-fb4d5da20a0a2013-07-04 14:44:22.33 UTCf9bc4caa-c0bf-4402-921f-6a7b966278692012-11-19 16:31:30.203 UTCd221a426-0cc2-48f2-8708-b4d084af30802012-11-15 20:10:37.583 UTC20802cea-b41e-4ca2-a2ca-0a9a813b7b1a2012-11-21 10:59:10.107 UTC211686d1-db28-4dd9-998c-1784436a72372013-07-03 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UTC3815a51f-3a30-4610-9e1b-f708710c09ea2012-11-15 16:32:29.58 UTC10381379-f996-4316-b6ed-9b9bfe8693b72012-11-21 10:03:15.32 UTC9af2e059-076f-4126-a974-c2f304ee6f942013-06-17 10:02:42.516 UTC0e491333-d49b-4eb1-91be-6403632363022013-01-25 13:56:54.667 UTC9142dddf-dbf7-4183-a9f1-52c8447806032013-06-26 15:25:35.531 UTCd84a4273-20fe-4a39-8cff-579ae3b1704f2012-11-15 20:08:08.195 UTC2cb49c78-14da-4430-90bd-b84e95db026a2012-11-22 14:37:00.995 UTCab386568-1213-496f-a270-86d04f401eb82012-11-14 16:41:43.877 UTC689109f7-85aa-47c9-ad0b-34d79cb9d8442013-01-25 16:07:04.718 UTCc416d61c-a6d9-473a-9cbb-3b10e5fb9f292013-01-30 14:27:18.774 UTCde12d06e-a785-4524-9985-8b890c68fe7f2013-01-30 14:19:29.437 UTCa5e74540-7974-402d-9bce-0946e1aec5fc2012-11-14 15:44:39.73 UTC76e46a4b-47d1-408b-a7f3-5e278dbc09792012-11-06 14:53:08.60 UTC341ee443-cda4-4278-8e62-f3aca03a507d2012-11-14 16:40:33.374 UTCff83774f-0f5b-41a7-9638-0ad1effbd61c2013-01-30 13:27:34.494 UTCa0cba77a-f4bc-4da8-a52d-1c59d7df29282013-06-26 10:11:34.418 UTC550ddea5-899b-4064-b657-affe540ebaf92012-11-20 18:44:58.313 UTC32e882ea-c4c0-45d3-8da5-c675e490ab022013-07-04 12:29:55.133 UTCe085c795-8d7d-4f4b-a2a4-458db27cc9f62012-11-19 15:35:06.800 UTC9a014b10-0a91-4068-9ee8-d2d949677cd52012-11-14 16:44:31.282 UTC62d47ae7-046f-4520-b036-c89abf3690082012-11-19 16:18:40.98 UTCb13c0c6f-b137-4899-8274-9e7be5d97c3b2012-11-19 16:57:54.22 UTC2d105ef8-fb21-4cdd-b218-e8d20f4faf1c2012-11-15 12:14:24.936 UTC0c3d01a0-ee52-4d3f-9296-4bc23f0fdaaa2013-01-30 13:13:34.355 UTCc58a243f-19b0-4282-b4d1-9ef6af540e362013-01-25 14:35:02.361 UTC1a22a7fe-2fb7-43e7-8d3b-514c5abd44522013-01-28 17:35:42.542 UTC36361196-3bec-4c36-8e33-16fb117701012012-11-14 14:16:45.843 UTC56515018-dcd4-4822-8d99-511cc1dfe7fd2012-11-14 14:31:36.988 UTCdc593166-ef02-49f3-8def-51f99d14c8cc2012-11-06 13:32:06.166 UTCee2df214-0fca-459d-8c6d-d93cd45847662012-11-19 14:52:45.966 UTCae5ea029-1b7b-4e9f-93d3-bbe39f7a53b02012-11-14 15:08:32.469 UTC76a50148-be7c-49ae-8393-6ebee3474c152012-11-19 15:53:34.327 UTC6a43d213-f25b-4ac2-8605-d45f86d6810f2012-12-13 15:24:17.117 UTC15c8adae-21db-4d07-9ffb-ff0d55f82a9f2012-11-14 14:55:52.808 UTCSarah Bourlat & Robert Kulawik2013-07-04 15:29:10.365 UTC238fb02d-a6a3-4f6e-93d4-4ce02fa77c982012-11-14 15:05:00.472 UTC8edd2658-e7bc-4440-9bb0-d9bdbd907d8f2012-11-15 16:47:57.611 UTC6184ce02-a06a-4882-a27d-20b3f909de302012-11-19 14:56:31.957 UTC68036345-d174-4b53-82cd-e7f7e72833da2013-01-25 13:36:39.965 UTC8bba940d-653d-4e0c-b510-d6cacb5334142012-11-15 14:58:35.247 UTCf758d6f0-a5f1-40e9-95fc-c52e277e90822013-07-04 12:39:39.745 UTC17758653-75fb-426d-a2dc-9fa3998c0cba2012-11-14 16:43:17.571 UTC1564d18d-4dd9-47f3-a0fd-9506bb48f58d2012-11-20 19:16:43.537 UTC1872cb70-6f7a-4d5f-b8ff-3fb5e6439c812013-01-30 14:39:36.854 UTCda89bf93-d06e-4f1e-98de-9ec20549d6572012-11-19 14:43:43.868 UTC27e463d7-6997-4158-8a03-13643c4fe0932013-07-12 14:47:38.76 UTCe318a054-d98a-41d5-8e39-8206120a7e912012-11-20 18:08:18.11 UTCf359dc82-708f-429a-9a6b-cbdf22f112d72013-06-27 13:10:40.801 UTC688a8ce4-8b8c-416b-b7da-f6362a6df88e2012-11-14 14:29:05.137 UTCf4576b43-1866-44cb-8af6-00f1e941af492013-07-03 15:44:13.114 UTC65f13598-d866-4eb1-ac45-f207bde8d9c72012-11-20 21:30:12.412 UTCb5a95fe9-03d1-4358-9700-f0f24955eed32012-11-20 21:40:52.210 UTCa0275183-7eb2-4494-ba0d-5d6b177faee12012-11-06 15:27:06.856 UTC0c43011f-e005-4961-bc0a-0c51cf34f4e22012-11-14 15:18:26.836 UTCfc8db719-5be0-4114-a723-91a1ef6593652012-11-14 14:41:15.974 UTC16a0b992-bd29-47c8-86cd-3af2c45ad4112012-11-14 16:39:43.524 UTC02b446bf-3225-4617-94e9-3bf3201b0b202013-07-03 12:47:14.542 UTC02a3e918-b484-44ac-bc0b-ced252729bb62013-01-25 12:52:32.535 UTCf93d8bcc-5c6e-495d-afd7-04b37fcac63f2013-07-03 13:19:37.753 UTCd4ee8ea1-9773-4c32-89de-15d31a251ae62012-11-15 12:15:16.527 UTC709b63a4-f54b-4309-a1e8-76771c6a999b2012-11-19 14:09:02.933 UTCbe8eb71d-0da2-48f7-88e3-66a30b41612f2012-12-06 11:42:52.109 UTC79a4c29c-90db-4666-8f5b-1bb8b875697b2013-01-28 17:29:32.294 UTC4758ae99-d3d2-4f6b-ab3a-7cbe5c0b707f2012-11-20 20:25:27.643 UTC1ea97a59-3c00-4f40-9398-15965a4456d92012-11-20 21:17:00.678 UTC476e393d-8b27-4e9d-9b49-ff970b64b84f2013-04-16 13:14:19.171 UTC0ddc27c1-55a2-4118-b59d-f86ef76eedb92012-11-22 14:56:11.469 UTCec7d70cc-ae0b-469f-98ba-135b7dccf9cf2012-11-22 14:36:04.144 UTC9c422a23-e48b-4245-8df7-564dc0ddbb582013-07-03 14:46:31.512 UTCdb9bb7a4-b96a-4d0b-ad96-2906751997c02013-01-30 13:17:01.567 UTC2accafc2-db96-4283-a235-46aa8e9fde402013-06-21 15:37:07.746 UTCb2e4833f-3f76-493c-b2e3-2b7c3db8bac12012-11-20 18:47:49.289 UTC25fb786d-4820-4a09-9314-c462f6aaf0082012-11-19 15:02:27.188 UTC1ce061eb-5e1f-4642-8b05-eb126c716a362012-11-06 14:00:34.5 UTC738017ec-6329-450c-992e-6869ce9f51b42013-01-30 13:06:25.666 UTC8fc7f692-e357-4fd8-bf37-4050de6505f12012-11-19 16:30:15.539 UTCede5a994-dd61-42eb-9028-17689e29e28f2012-11-15 16:48:58.768 UTC5f88e3c0-9538-4dd1-b866-420eb12b9cf32013-01-25 14:43:08.150 UTC1ab76c6e-0336-4ce1-8ebf-d9dd046e09812012-11-21 12:33:39.113 UTC666a0d04-0014-45c1-b7d4-8375e5b75db22013-07-04 10:49:19.146 UTCad31a1ad-858d-4aaa-8ba1-9bd01a4fae012012-11-19 16:16:39.868 UTCac597ee1-fb66-4155-98b0-e567a860a2a02012-12-17 10:37:56.379 UTC997473bb-3bdf-4aea-bec9-7580a23e64072012-11-22 14:34:56.337 UTC56039fa0-f6d3-4cf2-b64b-5dafb0d8bd142013-07-05 12:58:11.567 UTCac4621b4-aea5-4a7a-bf60-c4f22eda484b2012-11-19 14:59:52.328 UTCfdba2215-3e5e-443d-8de1-e33b16dbb0652013-06-18 06:04:22.957 UTCError_Handlerstatus11error_messagecreate_error_messagestatus1message00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivitystatus1'text/plain'java.lang.Stringtruemessage00workfloworg.embl.ebi.escience.scuflworkers.java.StringConcatUserNameHere2013-04-26 13:36:12.857 UTCnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecreate_error_messagestatuserror_messageaea894eb-bf60-4e98-a2c1-18baf6bb1ebc2012-05-03 23:50:07.97 UTC227b7dd2-105e-460b-b5d8-c85f41bbe24c2013-04-26 13:35:47.224 UTC7bad79d5-62f7-4b94-933a-4d0eebfb11992012-05-03 23:53:33.55 UTC889731d4-5d99-4c7e-adde-c461e8a0177c2012-05-03 23:54:34.802 UTCVera Hernandez Ernst2012-07-04 09:31:28.610 UTCcreates an error message, when an upload service fails.2012-07-04 09:31:59.910 UTC8d19ff9d-1164-4cc2-9862-268c02a65f6b2013-04-26 13:36:20.737 UTCError Handler2012-07-04 09:31:33.888 UTCc8f0fbbd-87b5-4db2-b7fc-b175ca35adc92012-05-03 23:32:11.259 UTC4da76a0e-b49a-4d3d-b95b-05a339a236d32012-05-03 23:53:59.55 UTC2ed08bd1-f531-45f5-8ce0-48936aadf5c92012-05-03 23:55:12.739 UTCb49d2ed4-a2fc-480f-a65b-56e1ddc95c2f2012-05-03 23:51:48.101 UTC9597d99f-8542-45e2-8205-c77b805fafea2012-05-03 23:49:38.865 UTCf05d4b02-7b7a-4472-a64f-70bfe12fc2002012-05-03 23:18:30.264 UTC676c3689-cdfe-4767-82c3-3635502e80022012-07-04 09:32:06.648 UTCee03ff6e-6f40-4894-a566-baee30588a4a2012-07-04 09:31:11.6 UTCe1ffc3d5-23d0-43ac-98b9-0d6452f8d7de2012-05-03 23:36:52.833 UTCdc1389d8-b1d6-438f-9184-2081bd48c88c2012-05-03 23:16:46.34 UTCRaster_Shim_Results_Parsersentinel00http://modeller.cria.org.br/maps/Gu09z3.img2012-05-03 22:18:04.112 UTCjson11parses the json given by the rastre shim service2012-05-04 14:20:42.634 UTC{"wcsurl":"http://biovel.iais.fraunhofer.de/geoserver/ows?service=WCS&version=1.0.0&request=GetCoverage&sourcecoverage=biovel:Gu09z3_20120702_164025_455&FORMAT=image/tiff&bbox=-180.0,-90.0,180.0,90.0&crs=EPSG:4326&width=720&height=360",
"wmsurl":"http://biovel.iais.fraunhofer.de/geoserver/ows?service=WMS&version=1.1.0&request=GetMap",
"pngurl":"https://biovel.iais.fraunhofer.de/geoserver/biovel/wms?service=WMS&version=1.1.0&request=GetMap&layers=biovel:Gu09z3_20120702_164025_455&styles=&bbox=-180.0,-90.0,180.0,90.0&width=660&height=330&srs=EPSG:4326&format=image/png",
"layername":"biovel:Gu09z3_20120702_164025_455",
"nativeFormat":"ERDASImg",
"srs":"EPSG:4326",
"boundingbox":"-180.0,-90.0,180.0,90.0",
"resolution":"720,360",
"supportedFormats":"GIF,PNG,JPEG,TIFF,GEOTIFF,ARCGRID"}2012-07-02 19:15:52.64 UTClayerLabel00The label for the layer to appear into the BioSTIF layer chooser. The name of the layer on the WMS server can be long and not significant enaough to differerentiate the Layers2012-07-02 08:31:29.594 UTCPresent2012-07-02 08:31:44.360 UTCraster_layernamerasterlayer_wmsurlrasterlayer_wcsurlraster_png_urlSTIF_layerdescriptionparse_json_raster_shim_resultsjson1layername00pngurl00serverurl00wmsurl00net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivityjson1text/plainjava.lang.Stringtruelayername00wmsurl00pngurl00error00serverurl00formats00resolution00boundingbox00srs00nativeFormat00workflownet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecreate_STIF_rasterlayer_parameterlabel0layername0stif_parameter00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivitylabel0'text/plain'java.lang.Stringtruelayername0'text/plain'java.lang.Stringtruestif_parameter00workfloworg.embl.ebi.escience.scuflworkers.java.StringConcatUserNameHere2013-07-08 14:14:24.460 UTCnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeparse_json_raster_shim_resultsjsoncreate_STIF_rasterlayer_parameterlabelcreate_STIF_rasterlayer_parameterlayernameraster_layernamerasterlayer_wmsurlrasterlayer_wcsurlraster_png_urlSTIF_layerdescriptionThis nested workflow parses the json results form the raster upload service and converts it into strings. It adapts the results according to the needed format for loading the raster layer into BioSTIF.
2012-07-02 13:31:16.699 UTC62e650c4-10b4-48ee-abb5-e39e3ef787962012-07-05 07:15:52.644 UTCd0315c9a-121e-4441-a5b7-12ffc03984c12012-05-03 22:18:04.567 UTC03b6e97b-65c9-45da-8410-d654207c2db52012-05-03 22:29:34.112 UTCb683eeb6-b235-4e93-bb4c-43c8138770822012-07-02 14:28:23.571 UTC7fcb1839-f254-4602-978a-3f9ce109fc282012-05-04 14:21:12.244 UTC8c7a95b0-103e-4464-87ae-a1935465558a2012-05-03 22:26:01.115 UTC69595075-5246-4779-9111-85d367adb51c2012-07-02 18:51:03.298 UTC0ad69323-6027-4720-a7cd-76cea667ea2e2012-07-05 07:23:12.722 UTCc7021805-562f-4576-baf4-6abe4dced5e12013-07-08 14:15:34.42 UTCb88555e3-0448-41ff-bbe8-3bca8d6b40b62013-04-26 13:58:26.80 UTC926c110d-aadb-4560-acc6-132051bc131d2012-05-03 22:28:22.332 UTC34b4d320-c666-4012-895b-1b470020d3b72012-07-02 13:31:02.436 UTC1ada8f58-9f68-4f42-8de4-8e762842ed592012-07-02 13:35:19.898 UTC73399944-86eb-45b1-8b51-7965f1c835cb2012-05-03 22:23:47.204 UTC8dea19fb-2a5d-447f-aad8-ec9da80ce5c12012-07-02 13:31:31.704 UTC9296fd91-7048-481f-a054-75f444891eaa2012-07-05 12:15:40.177 UTC3e0221e9-94ca-4582-a0c2-8cf6ddbd351c2012-07-02 18:51:46.267 UTC6fd05f68-fef8-4646-ac24-56c44a81cee72012-05-02 22:45:56.276 UTCba0d0eeb-0198-40ce-a04d-1f81a46257092012-07-05 07:22:25.438 UTC014e02f6-b731-4022-a41f-2b9f03ba68192012-07-02 13:47:29.572 UTC2b5fd89f-6fd6-47f4-9580-51b379d6ac742012-07-02 14:31:06.735 UTCec446f24-005e-4675-9c77-1b26021dfee42012-07-05 07:25:50.362 UTC0f9290f6-07f7-4a6b-b620-073da098849e2012-07-02 13:39:21.348 UTC26a149bb-cfdc-4dc7-bad6-dae5fad10dc02012-05-03 22:19:24.69 UTC9d073e1c-2bb2-4b42-8188-1329918bcd512012-05-03 23:02:40.583 UTCbbb18cc1-dc79-4d4a-8c5a-700842c541232012-05-03 22:37:45.136 UTCa743306b-0355-4d44-82f8-9bdc2efee91d2012-07-02 13:37:02.509 UTC4877d5dc-3e75-479e-88cf-b6c4cdea2b1d2012-05-03 22:27:36.405 UTC973a0e0a-48b2-449f-93c7-00b4f46b7f2f2012-05-03 23:05:41.541 UTCb6faf017-6fc1-4445-a37f-bff2dedea47d2012-07-02 19:15:53.767 UTCVera Hernandez2012-05-04 14:20:51.784 UTC5eebb06d-2b18-44cf-9793-0fd32f6b8ec62012-07-05 07:31:32.292 UTCb539607d-0465-4ac3-af0d-3e0a115728cd2012-05-04 14:59:56.543 UTC12893808-7ef3-4616-bff7-c064368872022012-05-04 14:20:03.601 UTC95b50fdc-942f-41b7-b388-dac282d765452012-05-03 22:53:45.387 UTCRaster Shim Results Parser2012-05-04 14:21:12.127 UTC32da6e7f-3ad6-4407-8862-524837a4fbe92012-05-02 22:29:40.85 UTCa5a0a264-b85d-4051-a76a-3371e68312732012-05-04 14:18:47.28 UTCc59f8278-0908-40bf-9ade-f85fb2c882c22012-07-02 13:37:44.924 UTC8b14aab3-53ea-48cf-ba3d-e49df1de67012012-07-02 18:42:03.704 UTCde740593-42f1-4a44-a92f-df930becf5ff2012-07-02 08:31:50.912 UTCRaster_SHIM_servicelayerLabel00Label of the Raster layer to be shown in STIF 2012-05-03 23:45:30.867 UTCPresent2012-05-03 23:45:06.6 UTCraster_style00Style to be applied to the coverage to rander images through the WMS. Should exist on the GeoServer. Default is vrt_raster_color2012-07-04 09:02:22.755 UTCvrt_raster_color2012-07-04 09:02:36.496 UTCraster_format00ERDASImg2012-07-04 09:01:16.360 UTCFormat of the raster source to be uploaded. it can be ommited and thedefault (ERDASImg) will be taken. Possible entries are:
entry (String) :Format explanation
====================================
AIG Arc/Info Binary Grid (AIG) Coverage Format
ArcGrid Arc Grid Coverage Format
DTED DTED Coverage Format
EHdr EHdr Coverage Format
ENVIHdr ENVIHdr Coverage Format
ERDASImg Erdas Imagine Coverage Format (default value)
GeoTIFF Tagged Image File Format with Geographic information
Gtopo30 Gtopo30 Coverage Format
ImageMosaic Image mosaicking plugin
JP2MrSID JP2K (MrSID) Coverage Format
MrSID MrSID Coverage Format
NITF NITF Coverage Format
RPFTOC RPFTOC Coverage Format
RST IDRIS (RST) Coverage Format
WorldImage 2012-07-04 09:01:11.372 UTCinputBody00rasterlayer_pngurlurl to a map of the uploaded layer as png format. Performs a getMap operation on a WMS service2012-07-02 21:33:53.359 UTClayer_namethe resulting layer name in the form {workspace}:{layername}. Can be submitted as a parameter to BioSTTIF2012-07-02 21:36:15.516 UTCbiovel_temp:layer_img_created2012-07-02 21:35:49.632 UTCservice_errorError as result of the upload REST service2012-07-02 21:34:30.538 UTCSTIF_layerdescriptionThe result to be submitted to BioSTIF example
layerlabel|layername|visibility2012-07-04 12:05:36.817 UTCraster_upload_serviceinputformat0layername0inputBody0styleName0status00responseBody00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivityPOSThttp://biovel.iais.fraunhofer.de/shim/rest/raster/workspaces?stylename={styleName}&inputformat={inputformat}&layername={layername}application/xmltext/plainStringfalsefalsefalsefalsetruestyleNamejava.lang.Stringlayernamejava.lang.Stringinputformatjava.lang.Stringnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecheck_service_okstatus0status_ok11status_failed11net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivitystatus0text/plainjava.lang.Stringtruestatus_failed11status_ok11workflownet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeErrorHandlerstatus1error_message00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeParseJSONOutputsentinel0layerLabel0json1STIF_layerdescription00raster_layername00raster_png_url00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeflatten_outputsstif_layerdescription1raster_layername1png_url1out_stif_layerdescription00out_pngurl00out_layername00net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivitystif_layerdescription1text/plainjava.lang.Stringtruepng_url1text/plainjava.lang.Stringtrueraster_layername1text/plainjava.lang.Stringtrueout_stif_layerdescription00out_pngurl00out_layername00workflownet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeraster_upload_serviceinputformatraster_upload_servicelayernameraster_upload_serviceinputBodyraster_upload_servicestyleNamecheck_service_okstatusErrorHandlerstatusParseJSONOutputsentinelParseJSONOutputlayerLabelParseJSONOutputjsonflatten_outputsstif_layerdescriptionflatten_outputsraster_layernameflatten_outputspng_urlrasterlayer_pngurllayer_nameservice_errorSTIF_layerdescriptionf60aff4b-cffa-483b-8713-a910daff731d2012-07-02 19:41:54.436 UTC523bcccb-c94b-4369-8481-ca6a85d57c322012-05-03 23:37:36.67 UTC1b5aa566-f223-45f9-a620-e45b70937ed92012-05-04 15:00:25.845 UTC1a64dab4-4e79-423d-8734-da98ed13edc02012-12-18 16:53:54.270 UTC3b4005aa-4d17-48cd-ba01-c6261cb31cc22012-05-03 23:45:42.437 UTC32da6e7f-3ad6-4407-8862-524837a4fbe92012-05-02 22:29:40.85 UTCVera Hernandez2012-05-03 23:43:28.226 UTC7ff3f6f4-bcc5-4789-9d75-282fd2095c362012-06-29 09:50:14.782 UTC23c7168c-abb9-428b-9888-4b841d08dd962012-07-05 12:22:55.761 UTCbbb18cc1-dc79-4d4a-8c5a-700842c541232012-05-03 22:37:45.136 UTCc000bde5-8db1-41ed-aca2-2438a0582b032012-12-18 15:15:18.38 UTC5f1a281b-e183-4b58-96f7-25cd0a6b01402012-07-02 14:22:48.177 UTC45ad9b93-86b7-4fc1-9995-e8679e8766162012-07-05 07:33:33.411 UTCf05993cc-1c21-461b-9cad-2c664cc9dab22012-05-03 23:21:44.100 UTC8af628b6-90a6-4ede-a1a8-f4cdb04c44f52012-05-03 23:55:55.326 UTC82e02dfd-ec23-4655-baa7-9a75e3e723c22012-12-19 22:49:33.778 UTC60744c25-46a6-4130-bba4-3d4534169b9f2013-03-14 13:25:55.355 UTC063a15bf-4748-474c-a987-500c180e742e2013-04-26 13:58:53.610 UTCThe workflow allows to upload a raster file (e.g. ERDAS img) to the BioVeL geoserver and prepares the output to be submitted to STIF. The result is the descritpion of a coverage layer on the GeoServer.
Other raster formats are available:
ERDASImg is taken as default value.
Further possible formats are:
AIG - Arc/Info Binary Grid (AIG) Coverage Format
ArcGrid - Arc Grid Coverage Format
DTED - DTED Coverage Format
ECW - ECW Coverage Format
EHdr - EHdr Coverage Format
ENVIHdr - ENVIHdr Coverage Format
ERDASImg - Erdas Imagine Coverage Format
GeoTIFF - Tagged Image File Format with Geographic information
Gtopo30 - Gtopo30 Coverage Format
ImageMosaic - Image mosaicking plugin
JP2ECW - JP2K (ECW) Coverage Format
NITF - NITF Coverage Format
WorldImage - A raster file accompanied by a spatial data file
2012-07-04 08:55:10.158 UTC7315aae5-8c0d-4b9e-94cf-35a0ffe1ba0d2013-03-11 11:17:42.288 UTC22c0b9c0-e726-4247-982a-e676e7065f4a2012-12-19 22:55:19.296 UTC27bc13dd-b91b-409c-ae2b-7a4b0f0fb60d2013-04-26 13:35:50.634 UTC03a60196-a110-4f68-a25e-299742be50302013-03-14 13:05:40.487 UTCd0315c9a-121e-4441-a5b7-12ffc03984c12012-05-03 22:18:04.567 UTCdf7893f4-410b-4ffb-b471-cbd179f643892013-03-11 16:04:49.885 UTCd5e149d9-d25f-4506-bc4f-27455279c8212013-03-11 15:23:02.587 UTC5e0935b0-28e4-4a83-b4ef-6254aee55a412012-07-05 12:07:02.710 UTC4eb088f4-4fcb-4d39-af3b-5d636ebac1312012-12-18 14:49:11.214 UTCd918190e-e622-4a0b-9250-72eb848634102013-03-14 12:48:25.173 UTC6da8a020-ff25-4db9-964d-6554ce5bf8062013-04-16 15:01:58.581 UTC51ef6957-a0b9-4715-b051-623fd4864f082012-05-03 23:29:37.778 UTC643a4f37-9701-4fe7-aea1-ec83c0c7390e2012-07-04 09:02:50.526 UTCe053d204-7d97-410d-bdf5-399dbfdedb2b2013-06-26 11:32:42.402 UTC5aa94db4-9a2a-46d8-bc46-04756d63b14d2012-07-02 14:39:58.10 UTC521ea996-0234-41bd-857e-fb8cf07e9b852012-12-18 15:12:29.451 UTC2de3a801-490a-491b-bcdb-fbcc075c570d2012-12-18 15:10:24.986 UTC158828b4-3387-4d44-bf22-429138a84a202013-04-26 14:02:22.40 UTC0b1843ea-3e1e-4b4d-8f25-4eb73ba03b862013-03-11 15:26:11.815 UTC8b37b624-e403-4391-a404-cb39763c19ea2012-07-04 09:32:26.854 UTC03b6e97b-65c9-45da-8410-d654207c2db52012-05-03 22:29:34.112 UTCde821087-e31f-48b3-8add-7c6fe72addb42012-05-03 23:47:40.660 UTC4294c826-dece-49ef-b5b4-70e50b3167e12012-07-02 14:36:07.356 UTC2a2c4c10-8c86-444f-8e20-55fb0b7f21db2012-07-05 07:32:02.578 UTCd2b71abf-b0eb-4cb7-8f64-83ee600c8b772012-05-04 14:07:10.839 UTCd50b5cff-0834-4834-94a9-19ee0b294f262012-05-04 14:21:45.450 UTC5204bb4c-f7f4-4aab-9711-033e2d602a8d2013-04-17 14:08:35.178 UTC926c110d-aadb-4560-acc6-132051bc131d2012-05-03 22:28:22.332 UTC155531b2-237e-41e4-9e95-380eeeb3eb9d2012-07-04 12:06:00.819 UTC6fd05f68-fef8-4646-ac24-56c44a81cee72012-05-02 22:45:56.276 UTC2fe76296-744f-47ae-bb2a-810905b422612012-07-05 12:19:59.166 UTC20c4b38c-c4be-4512-9d3d-7312a63198232012-07-05 07:18:50.222 UTC73399944-86eb-45b1-8b51-7965f1c835cb2012-05-03 22:23:47.204 UTC776554cd-f773-4d9b-b43f-baa3fc7dafa62013-03-14 13:32:11.353 UTCf1a3b0e4-f21e-4002-b98c-1a16894474642012-07-02 20:12:38.272 UTCaed12060-e0c7-4fbc-87a7-0e19e38cc22d2013-03-13 15:57:09.765 UTCRaster SHIM service2012-05-03 23:43:53.426 UTC8c7a95b0-103e-4464-87ae-a1935465558a2012-05-03 22:26:01.115 UTC6df6a218-7cb4-4b96-92b4-7d792185de792012-07-05 12:21:30.405 UTC4877d5dc-3e75-479e-88cf-b6c4cdea2b1d2012-05-03 22:27:36.405 UTC6b1c5a9b-e65b-47f8-9943-43d3ba49794f2012-07-05 12:16:12.134 UTC0bc124d3-85d0-45a0-aab6-de549e0d82742013-03-14 13:21:44.890 UTC95b50fdc-942f-41b7-b388-dac282d765452012-05-03 22:53:45.387 UTC09ebe828-0a37-45b2-b575-21a7b5e740dc2012-07-04 08:54:11.251 UTCd12ffacd-2ace-41d1-a3cc-30e298f1d2912012-07-02 14:19:59.434 UTC21718423-9775-409e-bae8-23fd85224b7b2013-04-16 14:47:55.899 UTC6d690994-e007-40b1-bc69-37c50810ac2c2012-07-02 21:36:20.721 UTC11cc1471-e443-4ffe-a78f-bce07bee86722013-04-26 13:36:34.337 UTC26a149bb-cfdc-4dc7-bad6-dae5fad10dc02012-05-03 22:19:24.69 UTC27a0e04a-d3c1-4042-8fa1-ffdee60dfd512013-07-08 14:15:50.411 UTC67ead0ea-5ebc-4621-9d31-f1804b2e24582013-03-11 13:04:33.200 UTC5e0cbf32-9bb9-467e-a168-70a052f4fa812012-12-19 22:44:41.406 UTC9d073e1c-2bb2-4b42-8188-1329918bcd512012-05-03 23:02:40.583 UTC