BioVeL_PSW___Post_stinput100http://biovel.iais.fraunhofer.de/biostif/data/present.img2013-07-11 14:45:25.245 UTCInput of the current layer. The difference will be computed as predictionLayer - currentLayer
Expected as input files are raster images as a URL from openModeller created by an ENM workflow. A file upload is not possible!
Supported formats are:
- ERDASImagine (.img) files with a value range 0 - 100, noData value 101
- GeoTIFF (.tif) files with a value range 0 - 254, noData Value 255
Input files with a different extent will be intersected to a common extent and the current layer (inputfile 1) will be resampled to the prediction layer (inputfile 2) using the "nearest neighbor" sampling method2013-07-05 15:24:33.757 UTCinput200http://biovel.iais.fraunhofer.de/biostif/data/prediction.img2013-07-11 14:56:32.177 UTCInput of the prediction layer. The difference will be computed as predictionLayer - currentLayer
Expected as input files are raster images as a URL from openModeller created by an ENM workflow. A file upload is not possible!
Supported formats are:
- ERDASImagine (.img) files with a value range 0 - 100, noData value 101
- GeoTIFF (.tif) files with a value range 0 - 254, noData Value 255
Input files with a different extent will be intersected to a common extent and the current layer (inputfile 1) will be resampled to the prediction layer (inputfile 2) using the "nearest neighbor" sampling method2013-07-05 15:24:38.787 UTClabel_species00Enter your favorite name for the species used in the "changes" output table only2013-06-28 10:03:07.153 UTCmy_spezies_name2013-03-11 11:05:06.9 UTClabel_difference_file00Enter your favorite name for the created difference file, this will be stored on Geoserver
NOTE: Please use only alphanumeric characters (space and hyphen), all other characters will be replaced.
During the storage a timestamp will be added to the filename2013-06-28 11:29:23.579 UTCmy_diff_filename2013-03-11 11:19:08.870 UTCPNG_output_size00Size of the output PNG's in pixels. 2013-07-05 15:13:06.44 UTC4002013-07-08 09:27:47.865 UTCchangesThis file contains the changes computation in the submitted files:
Overall coverage in the input raster files and their difference
overall_coverage = ((ncell(x)-cellStats(x, 'countNA')-count(x,0))/(ncell(x)-cellStats(x, 'countNA')))*100
difference = coverage_prediction - coverage_current
Overall intensity absolute and in percent and their difference
overall_intensity = (cellStats(x, sum)/(ncell(x)-cellStats(x, 'countNA')))
difference = intensity_prediction - intensity_current2013-07-12 14:54:09.691 UTCXX,Overall_coverage,in_the_Raster_output,DIFF_coverage,Overall_intensity,absolute_,Overall_intensity,percent_,DIFF_intensity_absolute,DIFF_intensity_percent
species,2012,2050,2050-2012,2012,2050,2012_%,2050_%,2050-2012,2050-2012_%
my_spezies_name,14.2127659574468,14.5565957446809,0.343829787234043,11.378896882494,5.17799953585519,4.47988066239921,2.03858249443118,-6.20089734663882,-2.441298167968042013-07-05 14:19:33.366 UTCcurrentLayerPngPNG overview of the current layer (input1) with a color ramp, as a background country borders based on the TDWG level4 layer will be fit to the raster extent
ERDASImagine file:
breakpoints = (0,1,25,50,75,100)
GeoTIFF file
breakpoints = c(0,2,63,127,190,254)
colors = c(rgb(1.0,1.0,1.0),rgb(0.996,0.898,0.851),rgb(0.988,0.682,0.569),rgb(0.984,0.416,0.290),rgb(0.871,0.176,0.149),rgb(0.647,0.059,0.082))2013-07-12 10:16:19.382 UTCdiffImgImage file of the difference layer, the format is the same as the input files: ERDASImagine or GeoTIFF2013-06-28 11:08:40.751 UTCdiffLayerPngPNG overview of the difference layer with a color ramp, as a background country borders based on the TDWG level4 layer will be fit to the raster extent
ERDASImagine file:
breakpoints = c(-100,-70,-50,-25,-1,1,25,50,70,100)
GeoTIFF file
breakpoints = c(-254,-190,-127,-63,-2,2,63,127,190,254)
colors = c(rgb(0.396,0.310,0.635),rgb(0.196,0.533,0.741),rgb(0.4,0.761,0.647),rgb(0.671,0.867,0.643),rgb(1.0,1.0,1.0),rgb(0.992,0.682,0.380),rgb(0.957,0.427,0.263),rgb(0.835,0.243,0.310),rgb(0.620,0.004,0.259))2013-07-12 10:15:50.657 UTCmatrix_diffMatrix table of the output raster file for the difference layer. The file is in the ArcGRID format2013-07-05 14:26:15.86 UTCmatrix_xMatrix table of the input raster file for the current layer, The file is in the ArcGRID format2013-07-05 14:26:28.226 UTCmatrix_yMatrix table of the input raster file for the prediction layer,. The file is in the ArcGRID format2013-07-05 14:26:37.166 UTCpredictionLayerPngPNG overview of the prediction layer (inpute) with a color ramp, as a background country borders based on the TDWG level4 layer will be fit to the raster extent
ERDASImagine file:
breakpoints = c(0,1,25,50,75,100)
GeoTIFF file
breakpoints = c(0,2,63,127,190,254)
colors = c(rgb(1.0,1.0,1.0),rgb(0.996,0.898,0.851),rgb(0.988,0.682,0.569),rgb(0.984,0.416,0.290),rgb(0.871,0.176,0.149),rgb(0.647,0.059,0.082))2013-07-12 10:16:38.688 UTCsummaryXX,ncell,mean,median,cv,sd,min,max,countNA
currentLayer,29375,4.47988066239921,0,287.401663188998,12.8752515326176,0,71.259842519685,16448
predictionLayer,29375,2.03858249443118,0,265.962928385008,5.42187369973329,0,35.0393700787402,16448
diffLayer,29375,-6.20089734663882,0,-422.830563923041,26.2192892190818,-131,76,164482013-07-05 14:20:01.606 UTCThis file containd the summary for the current, prediction and the difference layer:
- Number of cells (ncell),
- Meann and median value (mean,median)
- Coefficient of variation (cv)
- Standard deviation (sd)
- current miminal and maximal value (min,max)
- Number of noData values in file (countNA)2013-07-05 14:20:16.46 UTCBioSTIF_URLURL to BioSTIF with the difference layer
*NOTE*: The URL will not open automatically in a new window, please do it manually!2013-07-11 15:06:26.717 UTClogfilecomputation start: 2013-07-05 16:11:22
File 1 input format: GeoTIFF (.tif)
value range: 0 <> 254, noData 255, current values: min 0, max: 181
File 2 input format: GeoTIFF (.tif)
value range: 0 <> 254, noData 255, current values: min 0, max: 89
input files cropped: NO
input files normalized: NO
output file format: GeoTIFF (.tif)
value range: -254 <> 254, noData: 255, current values: min -131, max: 762013-07-05 14:21:02.766 UTCThis file contains a overview about the used files and the computation2013-07-05 14:20:55.736 UTCRaster_SHIM_serviceraster_format0layerLabel0inputBody0raster_style0STIF_layerdescription00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokerasterFormatvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivityArcGridnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringseperator0stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivitystringlist1l('text/plain')java.lang.Stringtrueseperator0'text/plain'java.lang.Stringtrueconcatenated00workfloworg.embl.ebi.escience.scuflworkers.java.StringListMergeUserNameHere2013-06-28 15:01:21.418 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UTC30ae309e-fd34-482a-acb1-52ab591ffcdf2013-07-05 14:40:08.528 UTC5d5218ed-5e94-46dd-b81c-b11c013603c52013-03-13 16:19:13.56 UTCe8e24c5d-5415-4f91-af7a-d9cab46f3abc2013-06-28 09:33:41.392 UTC6e649c3c-52ee-4859-935f-6c7ad0abd9092013-03-11 11:19:09.57 UTCda1275e2-1741-4489-a8ac-4a3f834878372013-06-28 11:35:04.144 UTC56f2bc5d-6b48-44fe-bfe4-e2b095bbb3762013-06-28 10:08:03.726 UTC23d07bc0-fc2e-46dd-80c8-1c9fc842856f2013-06-26 15:38:43.544 UTCad8c9874-2a79-4db4-8824-d858a5cd26322013-06-28 12:14:38.68 UTCSarah Bourlat & Robert Kulawik2013-06-27 15:30:45.808 UTC7f23f077-7096-49c7-8a54-b390b02139cb2013-06-27 15:41:50.989 UTC006e8adb-afbf-468c-86a8-f96b980218e52013-06-26 11:33:08.11 UTCa705550a-8f67-4911-ae07-a127d6384b5c2013-06-28 12:14:16.646 UTCd28f9262-95af-4a7f-aac4-5df26de595052013-06-28 11:34:08.318 UTCBioVeL PSW - Post statistical workflow with raster difference computation2013-07-11 14:41:16.262 UTCf62ae930-8a1c-4d20-a35b-ceeba1888e582013-06-28 15:02:27.146 UTC679ab56e-c9ec-48ca-a242-47a7b2ab4bb32013-07-12 10:09:42.709 UTCd0aacb35-212d-4140-b312-34d9d92562f02013-06-28 10:18:07.96 UTCb5c6bcba-f35d-4d44-8ff2-fabd6923d9512013-06-28 10:12:54.44 UTCc40b6903-4737-4f81-a033-5ab3932ddcb02013-06-28 11:08:42.535 UTC5ad651ba-3044-4f3e-af8d-e3cf514fda4a2013-06-28 11:32:41.27 UTC66bcfaae-11c1-4f05-a61a-4eca32fb268d2013-03-11 11:05:42.701 UTC3346fd4f-f2f3-4ca2-9a9b-fa7a816aff7a2013-03-14 14:17:29.731 UTC2863d399-8add-4ef8-a3d4-b125336351092013-07-11 14:56:33.754 UTC880cb9b5-38b9-455d-a8a1-95475a3634d02013-07-05 14:10:08.527 UTCe93d88c6-a301-46aa-89fc-38812983adea2013-07-05 15:17:23.70 UTC9172a80d-c563-4431-8cbe-37e592e2225b2013-03-11 11:22:23.230 UTC97b0d10c-6032-4f51-b512-ab08db6ce10d2013-06-27 15:31:46.76 UTC35d1c91d-0a5a-41ac-ac70-b9c6fe9dceca2013-06-03 10:54:27.825 UTCa72e9906-b318-412c-b48e-d34e955bb7f52013-03-11 20:14:30.369 UTC896eb84c-7939-4295-a8be-0131a093e4372013-04-16 13:30:39.37 UTCf4b1289f-272d-4c5d-b930-e72c7fefef202013-06-28 12:14:59.235 UTC56e10569-7cc3-4014-9f01-b6fc067184922013-03-11 14:56:33.767 UTCef4715db-ab21-47ae-9aa1-5f2f00ec392d2013-07-05 15:13:24.744 UTC8ea2fbab-0a12-4ad6-aba6-49be6500622c2013-06-28 11:06:31.667 UTCaca680dd-c426-4ea8-b78f-8f07b5b95baa2013-07-09 15:38:05.654 UTCc3204386-07d5-4c3d-8eaa-8797ec4194052013-07-05 13:54:45.245 UTCd1fb8dcb-4dc0-46d7-9fa6-284be64c4f5e2013-04-26 13:53:43.983 UTCa1bc4590-8c9d-4c86-abe2-24391e72ffd72013-07-08 09:27:49.331 UTC27fe140f-6d6d-4769-94b5-7b0f44d1546c2013-07-08 14:25:49.25 UTC1718ebf2-7c5e-4014-b6fc-4fccb846893a2013-04-16 15:03:12.897 UTC464ba3ea-2de2-41bd-971b-fd4ad55364ba2013-03-11 13:11:47.130 UTC1e4c5b05-756c-47ef-987b-baea64bf892a2013-07-05 14:18:37.984 UTCc13d9b96-1292-4795-820b-e1531300d54f2013-04-26 14:01:41.909 UTC498067df-a761-42a3-b200-71c6faaf800d2013-03-11 16:08:30.98 UTCfb17bb87-1a31-44cb-9828-78d3ad48b4442013-03-11 16:07:32.431 UTCb8a4b72d-96b0-4905-92a7-9ca107da48f52013-03-11 16:36:55.527 UTCb26b8cea-ac2b-4657-adbe-c0602f7d30652013-06-28 10:14:33.541 UTCThe postanalytical statistic workflow (PSW) allows the computation of the extent and intensity of change in species potential distribution through computation of the differences between two raster layers using the R statistical environment (R Core Team 2013). The difference file is computed from two input files (in this case present projection and 2050 projection). The difference between each corresponding raster cell value is computed and stored in the difference file, regardless of the input files’ geographical extent and origin. If the files have a different geographical extent and/or origin the raster-diff workflow automatically crops them to the same extent and resamples the values using the “nearest neighbour” method, resulting in a perfect cell match between the two rasters. The resulting value in the difference file ranges from the negative and positive maximum values of the input files to represent the maximum possible change in both directions. The diff result values are classified into six positive and negative classes. The predicted differences are presented for each species as a heat map, where cells with colors from green to red indicate an increase and from green to blue a decrease of predicted potential for a species. The workflow enables the computation of overall coverage, overall intensity and the difference in intensity or coverage between two raster layers. Overall coverage is computed as the percentage of raster cells with values >0, and overall intensity is computed as the sum of all valued cells divided by the number of raster cells. Summary statistics for the raster layers are also provided: number of raster cells, mean intensity, median, CV, SD, Min value, Max value and number of cells outside the mask.
This workflow store the computed difference image to the BioVeL Geoserver and create PNG overwiews contains the input and output files. The difference result image could be shown in the BioSTIF web visualisation client
The PNG overview will be created with these values (corresponding to the Geoserver style)
ERDASImagine file:
breakpoints = c(0,1,25,50,75,100)
GeoTIFF file
breakpoints = c(0,2,63,127,190,254)
colors = c(rgb(1.0,1.0,1.0),rgb(0.996,0.898,0.851),rgb(0.988,0.682,0.569),rgb(0.984,0.416,0.290),rgb(0.871,0.176,0.149),rgb(0.647,0.059,0.082))
Expected as input files are raster images as a URL from openModeller created by an ENM workflow. A file upload is not possible!
Supported formats are:
- ERDASImagine (.img) files with a value range 0 - 100, noData value 101
- GeoTIFF (.tif) files with a value range 0- 254, noData Value 255
Input files with a different extent will be intersected to a common extent and the current layer (inputfile 1) will be resampled to the prediction layer (inputfile 2) using the "nearest neighbor" sampling method.
The difference layer will be computed as inputfile_2 - inputfile_1
For working with the PSW in a own localhost an R instance should by installed on a own machine (http://cran.r-project.org/). For the computation the followed extensions must be installed: rgdal, raster and rserve. Rserve must be started before the computation.
--------------------
This workflow has been created by the Biodiversity Virtual e-Laboratory (BioVeL http://www.biovel.eu/) project. BioVeL is funded by the EU’s Seventh Framework Program, grant no. 283359.2013-07-05 14:53:07.718 UTC909f8e8c-aaeb-4c04-a2d7-563c8bb9b1d12013-04-26 13:35:55.564 UTC1b9813df-6aca-47a6-9075-fd3db252224f2013-06-26 13:31:47.982 UTCR_Raster_Diff_with_sinput100http://www.flexigeoweb.de/dl/4.img2012-12-13 14:45:11.410 UTCChoose your input file, the script is prepaired to use files coming out from a ENM openModeller instance: ERDASImage (.img) with the data range 0-100, noData 101 and GeoTIFF (.tif) with a data range 0-254, noData 255 2013-06-26 10:15:23.951 UTCinput200http://www.flexigeoweb.de/dl/3.img2012-12-13 14:45:25.825 UTCChoose your input file, the script is prepaired to use files coming out from a ENM openModeller instance: ERDASImage (.img) with the data range 0-100, noData 101 and GeoTIFF (.tif) with a data range 0-254, noData 255 2013-06-26 10:15:31.187 UTClabel00my_spezies_name2012-12-13 15:29:34.651 UTCpng_size00size of the created PNG2013-07-05 15:09:30.533 UTC8002013-07-05 15:09:17.103 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UTCd4c1d77c-9cae-42ef-a651-3ec44895d0662012-11-20 21:44:50.159 UTCac597ee1-fb66-4155-98b0-e567a860a2a02012-12-17 10:37:56.379 UTC66d50af2-8d1d-421b-88a1-5c4e706d33272012-11-14 14:39:19.541 UTC6bceda2a-f504-412c-9606-b5123bb285462012-11-14 15:21:07.986 UTC5662548d-6ec9-400e-b862-a5b8454217b22012-11-19 17:09:45.937 UTC0182082c-ce02-4988-aede-e9d0fd3dc13c2012-11-20 21:47:54.292 UTC6a43d213-f25b-4ac2-8605-d45f86d6810f2012-12-13 15:24:17.117 UTC7720d10d-5d37-45b0-94a4-fd37efa58b472012-11-19 14:46:30.278 UTC38da289f-72ae-4c0e-afce-e9e4fa7075512013-06-27 11:50:41.604 UTC09160780-6e33-42af-ac6b-8609837cc3872012-11-21 10:05:50.816 UTCf34a3f8c-439d-4707-8dea-36ed1b8026a72012-11-19 16:09:28.374 UTC8edd2658-e7bc-4440-9bb0-d9bdbd907d8f2012-11-15 16:47:57.611 UTC5127f8b2-4f4f-47cf-97ac-89e494478cbc2013-06-27 14:15:13.59 UTCa77d8e0c-5109-47df-859f-9baaf8362c7d2012-11-15 12:07:36.370 UTCcd5a48dd-4e87-42d1-8499-36cbceed27602012-11-19 14:48:46.975 UTC78069bcc-c374-4e71-8259-d340f45078202012-11-14 16:29:43.622 UTC21741c63-0d19-43ee-9025-894098d2fb2e2013-01-28 18:33:28.159 UTCa8100321-9696-4661-966e-a501c10ba9502012-11-19 16:20:16.866 UTC1c1a7111-a1eb-4ff0-be5c-07241f845c012012-11-14 12:28:47.210 UTC688a8ce4-8b8c-416b-b7da-f6362a6df88e2012-11-14 14:29:05.137 UTCd4383699-b4d3-4541-a5b5-2182c52d72d62013-07-03 14:46:17.112 UTCaba85fe9-ed56-4eb7-9379-7ee95204cc842012-11-06 14:51:42.512 UTC549cb6d7-98a7-4cb3-ac62-8c5ceb7323e82012-11-15 16:35:08.672 UTC49732764-b9d2-4884-993d-0453c4344f8f2012-11-14 16:34:06.374 UTC75059907-4256-458a-a767-a69fabb1b27d2013-07-03 15:25:24.221 UTCSarah Bourlat & Robert Kulawik2013-07-04 15:29:10.365 UTCthis workflow computes an raster diff from teo GeoTIFF or ERDASImagine files and some statistics about the files and their difference. For more about the input and output files see the BioVeL PSW workflow description2013-07-04 15:31:47.508 UTC2c10c399-60f8-4a53-aa06-ffabb33663f32013-01-28 17:37:53.358 UTCe6bee6dd-7506-4155-8af6-987c8600af3a2012-11-14 15:40:38.127 UTC7a6395c5-b1b5-4182-a444-c2a31d4720222012-11-14 14:39:56.654 UTC143eab78-3137-488b-8440-c625df5877182013-01-25 14:48:40.953 UTCdc38cee4-6e17-4d6a-bb72-6aa171ed04192013-06-27 13:16:50.314 UTCdd3fd6cf-730e-4878-9037-67cb0186b01d2013-07-04 15:31:49.275 UTC17b1d375-67ca-44b2-82a1-a66a6a96cc4a2013-01-28 19:08:23.418 UTC2d105ef8-fb21-4cdd-b218-e8d20f4faf1c2012-11-15 12:14:24.936 UTCecf50d4b-ee3b-45e6-900a-1ba66f61c9742012-11-06 15:38:14.545 UTC40862724-7627-4c07-af73-96a9ff1e02912013-07-04 14:24:08.151 UTC426b900c-0a58-49bf-a99d-88e59c59cb3d2012-11-15 16:49:48.889 UTCb2f99b22-1a00-4179-a6c5-9eeecfdde0722013-07-04 12:12:30.81 UTC8e745d46-19bf-4ea4-a378-c2cc06f812fd2012-11-19 16:32:29.143 UTCf7ca23d8-df65-431d-9bfa-9dc8225b6b0a2012-11-06 15:24:47.947 UTCf4a97049-177a-4156-b7e2-db929339df982012-11-20 18:59:17.503 UTCf1a96881-9df4-4ec8-94a4-72b747b333c02012-11-15 17:11:22.438 UTC1ea31560-fc4f-41ab-bfad-47df52e996c62012-11-20 19:19:44.272 UTCbd34e8a6-9849-45cc-b2c0-a3faab010d922012-11-14 14:42:56.641 UTC58cdcd04-5d04-4899-9ee0-68dbd3a1b2e22012-11-14 15:03:34.280 UTC1b8a8d6d-9dda-4401-8ee7-74d28618501f2012-11-19 15:00:42.170 UTC5fcd5f1e-5190-4091-b417-c21bf908d26a2012-11-19 15:45:28.222 UTCe318a054-d98a-41d5-8e39-8206120a7e912012-11-20 18:08:18.11 UTCf56221d5-27b4-4aa6-9813-200e563ad27c2013-07-04 14:19:46.692 UTC23781b67-7ca2-4ecd-9f38-9e64711e238d2012-11-19 16:36:58.870 UTCaa52c498-fb61-467d-bc75-7ee206fd19572012-11-14 14:49:10.899 UTCdd56f23e-9b9f-41e8-a6d3-201b77ec7a712012-11-19 17:08:52.741 UTC0bab30e6-2dfe-456d-ae0a-ef5d69694c032012-11-14 16:42:36.25 UTC721f7285-bc02-4cc0-94ce-f1a3df81f6122012-11-14 12:13:58.781 UTC503030a6-6d55-47a6-aa22-d5dd961287082012-11-20 19:41:30.455 UTC241e16bd-907d-454e-ae98-49fdf6bfd9522012-11-19 15:36:10.558 UTC9067ac42-6752-470a-83f8-1de87e5b66882012-11-14 16:51:00.987 UTCa3df48de-d7bb-47e5-8c0a-c6cad760d7242012-11-06 13:41:19.696 UTCf8ed728a-501e-407d-99f2-bba0006b3a282013-06-26 15:23:11.878 UTC86b02a51-99ce-4779-ae11-91f2562978702013-01-30 13:15:02.790 UTC35332a69-e837-4a8c-b829-917c263ff10c2012-11-19 16:50:23.829 UTCc45e2e05-3243-41a5-a8f2-7daa5065934c2012-11-20 20:40:26.589 UTC2cb49c78-14da-4430-90bd-b84e95db026a2012-11-22 14:37:00.995 UTC02a3e918-b484-44ac-bc0b-ced252729bb62013-01-25 12:52:32.535 UTCc53733fd-981c-46f5-bc2e-9997e3a6100d2012-12-13 14:43:29.869 UTC34466ee8-849b-4ba2-8120-cdc2c3fffaaf2013-01-30 14:57:07.495 UTC0f064ac4-7a70-442b-b85d-b631e705d78b2013-02-12 09:46:54.725 UTCac4621b4-aea5-4a7a-bf60-c4f22eda484b2012-11-19 14:59:52.328 UTC0fa186dd-aa11-4730-b91b-53702825b6672013-06-17 12:00:55.443 UTC4317f8ef-c594-4108-b8c7-d60bf34cd1cf2013-07-03 15:39:13.602 UTC793bc6c6-2c0b-4682-8ec9-cf7f1dc9bb562013-06-27 12:20:09.943 UTC211686d1-db28-4dd9-998c-1784436a72372013-07-03 13:26:18.927 UTCfecf5e90-3350-47a0-b3e7-62fbc60fbd532013-06-27 11:41:06.327 UTCd9ca0a72-4bdc-4a92-b049-5e49c57df4c12012-11-15 12:21:13.692 UTC689109f7-85aa-47c9-ad0b-34d79cb9d8442013-01-25 16:07:04.718 UTC26018de7-ab65-4fef-894e-1dee3c3ec6a92013-07-04 15:28:22.369 UTC3841be6b-5dd2-4445-886c-f854604ad4ed2013-06-27 13:15:15.424 UTCbc718f58-f0a6-4e54-a31e-095f1db9ed4f2012-11-19 16:00:10.64 UTC53c2fba3-0ee2-4e8b-b828-045059c84f552012-11-14 15:24:29.725 UTC166ed6be-9595-4997-81ba-0e8f6dcc717b2012-11-14 14:59:07.242 UTCec7d70cc-ae0b-469f-98ba-135b7dccf9cf2012-11-22 14:36:04.144 UTC56039fa0-f6d3-4cf2-b64b-5dafb0d8bd142013-07-05 12:58:11.567 UTCR Raster Diff with statistics2013-07-04 15:29:35.667 UTC069b9a50-390f-4a3e-921b-36d26a6aa30f2013-01-28 16:11:11.806 UTC8da7947c-7501-4cb6-904a-6e335dcec6722012-11-14 15:25:36.231 UTCcaddc975-8b8b-4234-bf88-df7b90c06ed42013-06-27 11:48:30.722 UTCd0f5522a-898b-4575-9dab-14a009f1981e2012-11-14 15:11:26.380 UTC666a0d04-0014-45c1-b7d4-8375e5b75db22013-07-04 10:49:19.146 UTC257a96ff-a9a4-42da-9902-e8fc8a908fac2012-11-19 15:54:09.803 UTC709b63a4-f54b-4309-a1e8-76771c6a999b2012-11-19 14:09:02.933 UTC9afb6db0-3920-445a-92e9-713e3d6bc2612012-11-06 14:43:34.735 UTC6631bd0e-2d94-4a2a-a8b4-eee18e3f634d2012-11-15 16:33:55.390 UTC1045f905-413d-4183-8a7b-034336cc8ee72012-11-15 12:09:57.101 UTCc8c501b4-96c4-479f-b8d4-c3df02bbe4c52012-11-14 16:29:19.301 UTCe085c795-8d7d-4f4b-a2a4-458db27cc9f62012-11-19 15:35:06.800 UTC79a4c29c-90db-4666-8f5b-1bb8b875697b2013-01-28 17:29:32.294 UTCa192deaf-9ecb-4bc8-aaae-05cbc1c5d0ad2012-11-14 16:46:47.47 UTC1ac53cdf-7398-4f7a-aa6f-c64e84dd3e502013-01-28 14:02:55.172 UTC28eebd67-1b47-4c9a-8224-bc0d839639762013-06-27 11:49:25.775 UTCc62a2f76-baf0-45b7-a126-48ba290e9faa2013-06-19 14:40:07.602 UTCa336b4e5-97a3-40a5-9cf9-cadae76aef302013-06-17 12:09:54.670 UTC542a101d-c8b6-4dc0-90b3-a5a6eb8d3d6e2013-01-30 13:20:48.68 UTC50c5eade-e1cc-4ca6-b9e9-a74f8ede7b7f2013-06-17 09:55:38.588 UTC7194a52a-be94-4ce0-98e5-c98f54bed4182012-11-06 14:38:22.423 UTCe2d71cc4-59c6-4166-a6b2-852469143ce82012-11-06 15:44:28.645 UTC917192e5-acaf-4b01-afe4-be8834d35aa12013-06-17 09:59:44.899 UTC10381379-f996-4316-b6ed-9b9bfe8693b72012-11-21 10:03:15.32 UTC42a74050-c895-4cc2-b780-7a2fc177996e2012-11-15 16:30:08.292 UTC0bf2cac3-90a4-45e1-939d-f115782899992012-11-06 15:23:32.797 UTCd9190ef7-b695-42d7-96fd-e9281bf3e2b02012-11-14 16:52:03.795 UTC855ff19e-8738-4b39-8e61-e01f9017062d2012-11-14 14:21:11.92 UTC76a50148-be7c-49ae-8393-6ebee3474c152012-11-19 15:53:34.327 UTCde12d06e-a785-4524-9985-8b890c68fe7f2013-01-30 14:19:29.437 UTC0ddc27c1-55a2-4118-b59d-f86ef76eedb92012-11-22 14:56:11.469 UTC890b4e06-6cba-4b83-a2ac-23996b946fdc2013-01-30 12:42:35.799 UTCc9b38c91-045e-4874-9ac0-d06d044febef2012-11-14 16:18:11.276 UTC806996c5-8a22-44cb-a908-a0aed78889692013-06-26 15:38:38.118 UTC2e871541-bbff-4f92-ae21-8e612533c3782012-11-19 16:10:06.96 UTCe02b3b29-33a0-465c-b2c5-8c2e131cfc8f2013-01-30 14:26:02.692 UTC62498bb8-69e4-4e04-8a51-b9d7360683b72013-06-27 13:22:34.452 UTCe9dbdc98-957e-440b-8f77-5cb82262635d2012-11-14 15:12:03.164 UTC0265715a-b652-4ec1-a9d8-0245164f3a622013-07-04 12:44:39.416 UTC5634e7fb-3fcc-458a-828e-32bd961c1d882012-12-13 15:29:34.792 UTC1473b3a3-ee6d-4b0a-9b46-a33712589d812013-01-24 17:12:57.542 UTCdf4fb336-5e0f-4a1c-9131-eb3a89c6557c2012-11-20 21:53:28.918 UTC6c19e5ed-eb27-48cf-9e46-7d3314275f562012-11-06 14:49:40.644 UTC2daa9b68-cdb9-41ce-9b0a-c279fa9418be2013-07-11 15:37:35.473 UTCbe8eb71d-0da2-48f7-88e3-66a30b41612f2012-12-06 11:42:52.109 UTC22a63ed4-72a2-475d-b9ae-6688108fbc982012-11-08 10:02:32.480 UTC353c1f93-6e83-4704-aba9-7273d69838be2013-01-30 13:40:13.358 UTC1f5cf6f2-b7e0-4290-bc5a-690df59419492012-11-19 16:40:28.414 UTC6d49c5b4-8601-42ce-91bd-27c55977bfca2012-11-19 16:04:53.737 UTCdcf11af5-d191-4675-adcd-76f754f4bfde2013-03-11 14:56:27.122 UTC1c1d7aa7-e4d3-43cb-ab9f-2a54abe173052012-11-20 18:57:34.468 UTC2b3c5042-0632-4adc-8e1b-9836c4b1f9a42013-06-27 14:19:20.222 UTC20802cea-b41e-4ca2-a2ca-0a9a813b7b1a2012-11-21 10:59:10.107 UTCca912786-2450-4f4c-a39a-20f174a5cfa32012-11-21 10:01:22.336 UTCeb40351d-a359-4dbe-82a5-411d97b2e2cb2012-11-14 15:04:20.21 UTC3431dc05-c183-4de3-9a93-f3df3e117a682013-07-11 14:53:16.830 UTC2edaa9a2-4628-4c85-bcb6-e61b701c92f42013-01-28 17:32:49.45 UTC254f283b-694b-486e-8aa1-c479bdd997672013-07-04 14:58:41.883 UTCac5ba237-13c9-4343-9f94-b08e370eb5fb2013-07-03 12:49:01.483 UTCf56929ff-73bc-4fd6-bf36-68d4f5627cbb2013-06-27 11:30:56.96 UTCbe692bb9-d385-4c3b-aca4-2d5f48b4b0602013-06-27 12:11:04.540 UTC818facb9-2477-429d-ac86-17139e192acd2013-06-27 13:17:38.558 UTC0ecbb567-d53a-4087-9da9-a68197c6bf752013-06-26 15:31:59.544 UTCc416d61c-a6d9-473a-9cbb-3b10e5fb9f292013-01-30 14:27:18.774 UTC0314dadd-a7f1-4ae6-8419-629190a99a262013-07-03 13:16:07.870 UTC61b8399b-19ef-4534-8f09-d52de4f6c2f52012-11-06 13:44:36.305 UTC2f63ee1e-5816-4e0a-b9b8-8edf35ec053c2012-11-14 14:23:19.164 UTCe45f864f-1666-44c9-bebd-f8b8e4c6a5832012-11-19 14:54:51.550 UTC7fc71371-31f6-43ed-8cdf-492217d3b8bd2012-12-13 14:55:15.679 UTCff83774f-0f5b-41a7-9638-0ad1effbd61c2013-01-30 13:27:34.494 UTCf74985aa-cd1f-47d3-8dc7-fb0f1cb461ba2012-11-22 14:33:00.876 UTC36361196-3bec-4c36-8e33-16fb117701012012-11-14 14:16:45.843 UTCe4c9d7f1-db65-4129-9c55-efa43b6f4c8c2012-11-06 12:40:58.675 UTCede5a994-dd61-42eb-9028-17689e29e28f2012-11-15 16:48:58.768 UTC4ccf9688-2ab8-4ced-8549-f8dcb307eddb2013-07-03 13:12:30.448 UTC3c296a4d-817c-488d-909b-98bc74d0c29a2013-06-26 13:31:04.723 UTC03cecc4e-1dcc-4531-8e06-82cb5271e6382013-07-03 13:34:56.212 UTCa2f5a6d8-42bf-4c5d-a7f6-c17572bb579e2013-06-27 13:12:52.81 UTC8f106413-1002-4c78-b8e9-897c775db4eb2013-01-30 14:31:39.25 UTCda2af0fe-0c48-45a8-8af2-78d059f51f052013-01-28 18:01:09.439 UTC9dbab32a-04f9-43fb-9eda-40d73ae293e72012-11-20 20:54:45.677 UTC95a9e641-94cf-4619-a21f-9e5389f74f912013-01-30 14:41:03.601 UTC8f455042-60ca-4678-b04c-6dd41a098cb82012-11-06 15:19:05.967 UTC2c053bcf-9287-4a13-b1b3-7cd43fc37d862012-11-06 13:49:12.902 UTC9c571b25-d47c-4bd1-91c5-e53dc682f25f2013-07-03 12:58:25.721 UTC75b56761-4a58-4287-860e-386432aa7b1f2012-11-21 10:10:18.390 UTC133becc9-764a-4408-a7a8-eac4276235442012-11-19 15:42:25.761 UTC12b5d745-f703-46a3-b9f4-d9ea79ac0bd72012-11-19 14:48:31.211 UTC0c529b56-4669-43b1-8cf9-430d3e493dd52013-06-25 16:25:33.58 UTC4603161d-7af2-4082-b9d7-1f1cba7e5f0d2012-11-14 15:41:01.784 UTC982336ea-39a1-4f4f-9bc1-3a00786f91962013-07-04 12:28:35.99 UTC43c71aff-c504-4daa-ba53-da355feb90682012-11-20 20:43:32.634 UTCdd05c7fc-069e-4d5b-baa2-0308cab3ada02013-06-27 11:57:50.16 UTC53b204a7-89e6-4d51-85cb-769fe5c48d152013-01-11 12:55:17.450 UTC8a0711a8-1188-4d03-9d7e-22fb80c50b9e2013-02-12 09:49:27.887 UTCf93d8bcc-5c6e-495d-afd7-04b37fcac63f2013-07-03 13:19:37.753 UTC8b31d4eb-b77e-466a-bacd-8d55ba401a282013-01-25 12:50:20.345 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UTC130777fd-2d0e-4cbe-b3b5-913a0e47494a2013-07-04 12:26:37.482 UTC04f55660-a379-4791-8145-c540a3535a4b2012-11-20 20:58:48.402 UTCf6a09ec2-4fc5-48e3-9a23-2da3cb0d2cb72013-01-30 12:52:40.101 UTC1a22a7fe-2fb7-43e7-8d3b-514c5abd44522013-01-28 17:35:42.542 UTC97911195-3b2f-4843-aef8-ac66e46c041b2013-01-11 12:55:32.538 UTC159ff88c-8f00-4e6d-951d-536763f730c72012-11-14 14:58:18.397 UTC6ec75d26-ece5-44c8-8288-c0f6b1f17a552013-01-30 12:47:55.986 UTCe3b5ae2e-b92b-4206-a3a4-b5454f6182c22013-01-30 14:34:42.403 UTCee2df214-0fca-459d-8c6d-d93cd45847662012-11-19 14:52:45.966 UTC483313fd-154b-4b35-870d-a100b984d96c2012-11-14 14:53:53.35 UTCf359dc82-708f-429a-9a6b-cbdf22f112d72013-06-27 13:10:40.801 UTCeb893a34-d99f-426a-83c1-3e15afa28f842012-11-21 09:59:48.922 UTCa90ba418-46f4-4027-938f-650a2893c8242013-02-12 09:54:01.284 UTC3e5816ef-60bb-4cbe-af0d-9ed20ef057202012-11-22 14:22:47.294 UTC045df9cf-c348-4819-91fb-c185b391c2ad2013-07-04 11:01:49.425 UTC2ae2c447-6ae8-4dad-92ff-eae7b1b32dab2012-11-19 15:41:32.377 UTCfdd413e0-61af-405f-b1e6-07a4de44b2a52013-06-26 15:15:02.457 UTC762241c2-3c51-4465-80e4-34d01bd2a30e2012-11-06 14:02:10.346 UTC53a88981-b26f-4369-ad14-2739f7f724a62012-11-15 12:13:53.143 UTC4efff881-668e-45f1-bd4b-7aea5ddaef232012-11-19 14:57:33.961 UTCf909e5be-25e1-4ac3-a889-10202a3bd5442012-11-19 15:39:37.762 UTCa5e74540-7974-402d-9bce-0946e1aec5fc2012-11-14 15:44:39.73 UTCa94c3fb6-ed02-4c1f-a198-9ba32d5b59dc2012-11-20 18:55:37.143 UTC7245dfce-8c23-4b12-89fe-315fe86fbdde2012-11-15 16:39:05.167 UTC2a2c0802-e273-4ce9-8aec-425ae8e109242012-11-20 19:18:20.142 UTC64b791aa-5047-45fe-81fd-9851bdf9c4842013-03-11 11:06:17.326 UTC9c422a23-e48b-4245-8df7-564dc0ddbb582013-07-03 14:46:31.512 UTC965a705e-197c-4cd5-9368-b98e0c21c39f2012-11-14 16:20:22.675 UTCca9329d1-df60-464c-898f-72673dff52ee2012-11-20 18:20:02.766 UTC7c8db44d-f9a4-4292-b26b-2e5bc5cb27b72012-11-14 14:42:15.119 UTC85cb1d97-1650-4a47-8469-8830cbea3d262012-11-19 15:01:16.833 UTC5865a1bb-4b64-4c80-bdf9-b896d9aa3be92013-06-26 15:17:02.180 UTCf20ca662-5a64-482a-b534-b726d23b45b22012-11-14 14:57:20.498 UTCRaster_Shim_Results_Parsersentinel00http://modeller.cria.org.br/maps/Gu09z3.img2012-05-03 22:18:04.112 UTCjson11{"wcsurl":"http://biovel.iais.fraunhofer.de/geoserver/ows?service=WCS&version=1.0.0&request=GetCoverage&sourcecoverage=biovel:Gu09z3_20120702_164025_455&FORMAT=image/tiff&bbox=-180.0,-90.0,180.0,90.0&crs=EPSG:4326&width=720&height=360",
"wmsurl":"http://biovel.iais.fraunhofer.de/geoserver/ows?service=WMS&version=1.1.0&request=GetMap",
"pngurl":"https://biovel.iais.fraunhofer.de/geoserver/biovel/wms?service=WMS&version=1.1.0&request=GetMap&layers=biovel:Gu09z3_20120702_164025_455&styles=&bbox=-180.0,-90.0,180.0,90.0&width=660&height=330&srs=EPSG:4326&format=image/png",
"layername":"biovel:Gu09z3_20120702_164025_455",
"nativeFormat":"ERDASImg",
"srs":"EPSG:4326",
"boundingbox":"-180.0,-90.0,180.0,90.0",
"resolution":"720,360",
"supportedFormats":"GIF,PNG,JPEG,TIFF,GEOTIFF,ARCGRID"}2012-07-02 19:15:52.64 UTCparses the json given by the rastre shim service2012-05-04 14:20:42.634 UTClayerLabel00Present2012-07-02 08:31:44.360 UTCThe label for the layer to appear into the BioSTIF layer chooser. The name of the layer on the WMS server can be long and not significant enaough to differerentiate the Layers2012-07-02 08:31:29.594 UTCraster_layernamerasterlayer_wmsurlrasterlayer_wcsurlraster_png_urlSTIF_layerdescriptionparse_json_raster_shim_resultsjson1layername00pngurl00serverurl00wmsurl00net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivityjson1text/plainjava.lang.Stringtruelayername00wmsurl00pngurl00error00serverurl00formats00resolution00boundingbox00srs00nativeFormat00workflownet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecreate_STIF_rasterlayer_parameterlabel0layername0stif_parameter00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivitylabel0'text/plain'java.lang.Stringtruelayername0'text/plain'java.lang.Stringtruestif_parameter00workfloworg.embl.ebi.escience.scuflworkers.java.StringConcatUserNameHere2013-07-08 14:14:24.460 UTCnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeparse_json_raster_shim_resultsjsoncreate_STIF_rasterlayer_parameterlabelcreate_STIF_rasterlayer_parameterlayernameraster_layernamerasterlayer_wmsurlrasterlayer_wcsurlraster_png_urlSTIF_layerdescriptionVera Hernandez2012-05-04 14:20:51.784 UTCc59f8278-0908-40bf-9ade-f85fb2c882c22012-07-02 13:37:44.924 UTC32da6e7f-3ad6-4407-8862-524837a4fbe92012-05-02 22:29:40.85 UTC0f9290f6-07f7-4a6b-b620-073da098849e2012-07-02 13:39:21.348 UTC2b5fd89f-6fd6-47f4-9580-51b379d6ac742012-07-02 14:31:06.735 UTC6fd05f68-fef8-4646-ac24-56c44a81cee72012-05-02 22:45:56.276 UTC9296fd91-7048-481f-a054-75f444891eaa2012-07-05 12:15:40.177 UTC62e650c4-10b4-48ee-abb5-e39e3ef787962012-07-05 07:15:52.644 UTCb683eeb6-b235-4e93-bb4c-43c8138770822012-07-02 14:28:23.571 UTC4877d5dc-3e75-479e-88cf-b6c4cdea2b1d2012-05-03 22:27:36.405 UTCRaster Shim Results Parser2012-05-04 14:21:12.127 UTC26a149bb-cfdc-4dc7-bad6-dae5fad10dc02012-05-03 22:19:24.69 UTCde740593-42f1-4a44-a92f-df930becf5ff2012-07-02 08:31:50.912 UTCa5a0a264-b85d-4051-a76a-3371e68312732012-05-04 14:18:47.28 UTC1ada8f58-9f68-4f42-8de4-8e762842ed592012-07-02 13:35:19.898 UTCb88555e3-0448-41ff-bbe8-3bca8d6b40b62013-04-26 13:58:26.80 UTCec446f24-005e-4675-9c77-1b26021dfee42012-07-05 07:25:50.362 UTC973a0e0a-48b2-449f-93c7-00b4f46b7f2f2012-05-03 23:05:41.541 UTC7fcb1839-f254-4602-978a-3f9ce109fc282012-05-04 14:21:12.244 UTC926c110d-aadb-4560-acc6-132051bc131d2012-05-03 22:28:22.332 UTCbbb18cc1-dc79-4d4a-8c5a-700842c541232012-05-03 22:37:45.136 UTC95b50fdc-942f-41b7-b388-dac282d765452012-05-03 22:53:45.387 UTCb539607d-0465-4ac3-af0d-3e0a115728cd2012-05-04 14:59:56.543 UTC73399944-86eb-45b1-8b51-7965f1c835cb2012-05-03 22:23:47.204 UTC12893808-7ef3-4616-bff7-c064368872022012-05-04 14:20:03.601 UTC69595075-5246-4779-9111-85d367adb51c2012-07-02 18:51:03.298 UTCc7021805-562f-4576-baf4-6abe4dced5e12013-07-08 14:15:34.42 UTCba0d0eeb-0198-40ce-a04d-1f81a46257092012-07-05 07:22:25.438 UTC34b4d320-c666-4012-895b-1b470020d3b72012-07-02 13:31:02.436 UTCa743306b-0355-4d44-82f8-9bdc2efee91d2012-07-02 13:37:02.509 UTCThis nested workflow parses the json results form the raster upload service and converts it into strings. It adapts the results according to the needed format for loading the raster layer into BioSTIF.
2012-07-02 13:31:16.699 UTC8c7a95b0-103e-4464-87ae-a1935465558a2012-05-03 22:26:01.115 UTC014e02f6-b731-4022-a41f-2b9f03ba68192012-07-02 13:47:29.572 UTCb6faf017-6fc1-4445-a37f-bff2dedea47d2012-07-02 19:15:53.767 UTCd0315c9a-121e-4441-a5b7-12ffc03984c12012-05-03 22:18:04.567 UTC3e0221e9-94ca-4582-a0c2-8cf6ddbd351c2012-07-02 18:51:46.267 UTC5eebb06d-2b18-44cf-9793-0fd32f6b8ec62012-07-05 07:31:32.292 UTC8dea19fb-2a5d-447f-aad8-ec9da80ce5c12012-07-02 13:31:31.704 UTC8b14aab3-53ea-48cf-ba3d-e49df1de67012012-07-02 18:42:03.704 UTC9d073e1c-2bb2-4b42-8188-1329918bcd512012-05-03 23:02:40.583 UTC03b6e97b-65c9-45da-8410-d654207c2db52012-05-03 22:29:34.112 UTC0ad69323-6027-4720-a7cd-76cea667ea2e2012-07-05 07:23:12.722 UTCError_Handlerstatus11error_messagecreate_error_messagestatus1message00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivitystatus1'text/plain'java.lang.Stringtruemessage00workfloworg.embl.ebi.escience.scuflworkers.java.StringConcatUserNameHere2013-04-26 13:36:12.857 UTCnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecreate_error_messagestatuserror_message676c3689-cdfe-4767-82c3-3635502e80022012-07-04 09:32:06.648 UTC8d19ff9d-1164-4cc2-9862-268c02a65f6b2013-04-26 13:36:20.737 UTC2ed08bd1-f531-45f5-8ce0-48936aadf5c92012-05-03 23:55:12.739 UTC227b7dd2-105e-460b-b5d8-c85f41bbe24c2013-04-26 13:35:47.224 UTCVera Hernandez Ernst2012-07-04 09:31:28.610 UTC889731d4-5d99-4c7e-adde-c461e8a0177c2012-05-03 23:54:34.802 UTCee03ff6e-6f40-4894-a566-baee30588a4a2012-07-04 09:31:11.6 UTCc8f0fbbd-87b5-4db2-b7fc-b175ca35adc92012-05-03 23:32:11.259 UTCe1ffc3d5-23d0-43ac-98b9-0d6452f8d7de2012-05-03 23:36:52.833 UTCError Handler2012-07-04 09:31:33.888 UTCaea894eb-bf60-4e98-a2c1-18baf6bb1ebc2012-05-03 23:50:07.97 UTCdc1389d8-b1d6-438f-9184-2081bd48c88c2012-05-03 23:16:46.34 UTCcreates an error message, when an upload service fails.2012-07-04 09:31:59.910 UTCf05d4b02-7b7a-4472-a64f-70bfe12fc2002012-05-03 23:18:30.264 UTC4da76a0e-b49a-4d3d-b95b-05a339a236d32012-05-03 23:53:59.55 UTCb49d2ed4-a2fc-480f-a65b-56e1ddc95c2f2012-05-03 23:51:48.101 UTC7bad79d5-62f7-4b94-933a-4d0eebfb11992012-05-03 23:53:33.55 UTC9597d99f-8542-45e2-8205-c77b805fafea2012-05-03 23:49:38.865 UTCRaster_SHIM_servicelayerLabel00Present2012-05-03 23:45:06.6 UTCLabel of the Raster layer to be shown in STIF 2012-05-03 23:45:30.867 UTCraster_style00vrt_raster_color2012-07-04 09:02:36.496 UTCStyle to be applied to the coverage to rander images through the WMS. Should exist on the GeoServer. Default is vrt_raster_color2012-07-04 09:02:22.755 UTCraster_format00Format of the raster source to be uploaded. it can be ommited and thedefault (ERDASImg) will be taken. Possible entries are:
entry (String) :Format explanation
====================================
AIG Arc/Info Binary Grid (AIG) Coverage Format
ArcGrid Arc Grid Coverage Format
DTED DTED Coverage Format
EHdr EHdr Coverage Format
ENVIHdr ENVIHdr Coverage Format
ERDASImg Erdas Imagine Coverage Format (default value)
GeoTIFF Tagged Image File Format with Geographic information
Gtopo30 Gtopo30 Coverage Format
ImageMosaic Image mosaicking plugin
JP2MrSID JP2K (MrSID) Coverage Format
MrSID MrSID Coverage Format
NITF NITF Coverage Format
RPFTOC RPFTOC Coverage Format
RST IDRIS (RST) Coverage Format
WorldImage 2012-07-04 09:01:11.372 UTCERDASImg2012-07-04 09:01:16.360 UTCinputBody00rasterlayer_pngurlurl to a map of the uploaded layer as png format. Performs a getMap operation on a WMS service2012-07-02 21:33:53.359 UTClayer_namethe resulting layer name in the form {workspace}:{layername}. Can be submitted as a parameter to BioSTTIF2012-07-02 21:36:15.516 UTCbiovel_temp:layer_img_created2012-07-02 21:35:49.632 UTCservice_errorError as result of the upload REST service2012-07-02 21:34:30.538 UTCSTIF_layerdescriptionThe result to be submitted to BioSTIF example
layerlabel|layername|visibility2012-07-04 12:05:36.817 UTCraster_upload_serviceinputformat0layername0inputBody0styleName0status00responseBody00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivityPOSThttp://biovel.iais.fraunhofer.de/shim/rest/raster/workspaces?stylename={styleName}&inputformat={inputformat}&layername={layername}application/xmltext/plainStringfalsefalsefalsefalsetruestyleNamejava.lang.Stringlayernamejava.lang.Stringinputformatjava.lang.Stringnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecheck_service_okstatus0status_ok11status_failed11net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivitystatus0text/plainjava.lang.Stringtruestatus_failed11status_ok11workflownet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeErrorHandlerstatus1error_message00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeParseJSONOutputsentinel0layerLabel0json1STIF_layerdescription00raster_layername00raster_png_url00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeflatten_outputsstif_layerdescription1raster_layername1png_url1out_stif_layerdescription00out_pngurl00out_layername00net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivitystif_layerdescription1text/plainjava.lang.Stringtruepng_url1text/plainjava.lang.Stringtrueraster_layername1text/plainjava.lang.Stringtrueout_stif_layerdescription00out_pngurl00out_layername00workflownet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeraster_upload_serviceinputformatraster_upload_servicelayernameraster_upload_serviceinputBodyraster_upload_servicestyleNamecheck_service_okstatusErrorHandlerstatusParseJSONOutputsentinelParseJSONOutputlayerLabelParseJSONOutputjsonflatten_outputsstif_layerdescriptionflatten_outputsraster_layernameflatten_outputspng_urlrasterlayer_pngurllayer_nameservice_errorSTIF_layerdescriptionVera Hernandez2012-05-03 23:43:28.226 UTC0bc124d3-85d0-45a0-aab6-de549e0d82742013-03-14 13:21:44.890 UTC51ef6957-a0b9-4715-b051-623fd4864f082012-05-03 23:29:37.778 UTC32da6e7f-3ad6-4407-8862-524837a4fbe92012-05-02 22:29:40.85 UTCd50b5cff-0834-4834-94a9-19ee0b294f262012-05-04 14:21:45.450 UTC67ead0ea-5ebc-4621-9d31-f1804b2e24582013-03-11 13:04:33.200 UTC9d073e1c-2bb2-4b42-8188-1329918bcd512012-05-03 23:02:40.583 UTC5f1a281b-e183-4b58-96f7-25cd0a6b01402012-07-02 14:22:48.177 UTC7ff3f6f4-bcc5-4789-9d75-282fd2095c362012-06-29 09:50:14.782 UTC2fe76296-744f-47ae-bb2a-810905b422612012-07-05 12:19:59.166 UTC643a4f37-9701-4fe7-aea1-ec83c0c7390e2012-07-04 09:02:50.526 UTC5e0cbf32-9bb9-467e-a168-70a052f4fa812012-12-19 22:44:41.406 UTC4eb088f4-4fcb-4d39-af3b-5d636ebac1312012-12-18 14:49:11.214 UTC21718423-9775-409e-bae8-23fd85224b7b2013-04-16 14:47:55.899 UTC7315aae5-8c0d-4b9e-94cf-35a0ffe1ba0d2013-03-11 11:17:42.288 UTC03b6e97b-65c9-45da-8410-d654207c2db52012-05-03 22:29:34.112 UTC4877d5dc-3e75-479e-88cf-b6c4cdea2b1d2012-05-03 22:27:36.405 UTC0b1843ea-3e1e-4b4d-8f25-4eb73ba03b862013-03-11 15:26:11.815 UTC09ebe828-0a37-45b2-b575-21a7b5e740dc2012-07-04 08:54:11.251 UTC5e0935b0-28e4-4a83-b4ef-6254aee55a412012-07-05 12:07:02.710 UTCd0315c9a-121e-4441-a5b7-12ffc03984c12012-05-03 22:18:04.567 UTC1a64dab4-4e79-423d-8734-da98ed13edc02012-12-18 16:53:54.270 UTCd5e149d9-d25f-4506-bc4f-27455279c8212013-03-11 15:23:02.587 UTC5aa94db4-9a2a-46d8-bc46-04756d63b14d2012-07-02 14:39:58.10 UTC158828b4-3387-4d44-bf22-429138a84a202013-04-26 14:02:22.40 UTC776554cd-f773-4d9b-b43f-baa3fc7dafa62013-03-14 13:32:11.353 UTC521ea996-0234-41bd-857e-fb8cf07e9b852012-12-18 15:12:29.451 UTCde821087-e31f-48b3-8add-7c6fe72addb42012-05-03 23:47:40.660 UTCf1a3b0e4-f21e-4002-b98c-1a16894474642012-07-02 20:12:38.272 UTC6fd05f68-fef8-4646-ac24-56c44a81cee72012-05-02 22:45:56.276 UTC73399944-86eb-45b1-8b51-7965f1c835cb2012-05-03 22:23:47.204 UTC8af628b6-90a6-4ede-a1a8-f4cdb04c44f52012-05-03 23:55:55.326 UTCc000bde5-8db1-41ed-aca2-2438a0582b032012-12-18 15:15:18.38 UTC11cc1471-e443-4ffe-a78f-bce07bee86722013-04-26 13:36:34.337 UTC6d690994-e007-40b1-bc69-37c50810ac2c2012-07-02 21:36:20.721 UTC60744c25-46a6-4130-bba4-3d4534169b9f2013-03-14 13:25:55.355 UTC8b37b624-e403-4391-a404-cb39763c19ea2012-07-04 09:32:26.854 UTCe053d204-7d97-410d-bdf5-399dbfdedb2b2013-06-26 11:32:42.402 UTC6da8a020-ff25-4db9-964d-6554ce5bf8062013-04-16 15:01:58.581 UTC95b50fdc-942f-41b7-b388-dac282d765452012-05-03 22:53:45.387 UTC20c4b38c-c4be-4512-9d3d-7312a63198232012-07-05 07:18:50.222 UTC523bcccb-c94b-4369-8481-ca6a85d57c322012-05-03 23:37:36.67 UTC2de3a801-490a-491b-bcdb-fbcc075c570d2012-12-18 15:10:24.986 UTCf05993cc-1c21-461b-9cad-2c664cc9dab22012-05-03 23:21:44.100 UTCbbb18cc1-dc79-4d4a-8c5a-700842c541232012-05-03 22:37:45.136 UTCaed12060-e0c7-4fbc-87a7-0e19e38cc22d2013-03-13 15:57:09.765 UTCf60aff4b-cffa-483b-8713-a910daff731d2012-07-02 19:41:54.436 UTCThe workflow allows to upload a raster file (e.g. ERDAS img) to the BioVeL geoserver and prepares the output to be submitted to STIF. The result is the descritpion of a coverage layer on the GeoServer.
Other raster formats are available:
ERDASImg is taken as default value.
Further possible formats are:
AIG - Arc/Info Binary Grid (AIG) Coverage Format
ArcGrid - Arc Grid Coverage Format
DTED - DTED Coverage Format
ECW - ECW Coverage Format
EHdr - EHdr Coverage Format
ENVIHdr - ENVIHdr Coverage Format
ERDASImg - Erdas Imagine Coverage Format
GeoTIFF - Tagged Image File Format with Geographic information
Gtopo30 - Gtopo30 Coverage Format
ImageMosaic - Image mosaicking plugin
JP2ECW - JP2K (ECW) Coverage Format
NITF - NITF Coverage Format
WorldImage - A raster file accompanied by a spatial data file
2012-07-04 08:55:10.158 UTC6df6a218-7cb4-4b96-92b4-7d792185de792012-07-05 12:21:30.405 UTC926c110d-aadb-4560-acc6-132051bc131d2012-05-03 22:28:22.332 UTC22c0b9c0-e726-4247-982a-e676e7065f4a2012-12-19 22:55:19.296 UTC27bc13dd-b91b-409c-ae2b-7a4b0f0fb60d2013-04-26 13:35:50.634 UTCd12ffacd-2ace-41d1-a3cc-30e298f1d2912012-07-02 14:19:59.434 UTC3b4005aa-4d17-48cd-ba01-c6261cb31cc22012-05-03 23:45:42.437 UTC26a149bb-cfdc-4dc7-bad6-dae5fad10dc02012-05-03 22:19:24.69 UTCd2b71abf-b0eb-4cb7-8f64-83ee600c8b772012-05-04 14:07:10.839 UTCdf7893f4-410b-4ffb-b471-cbd179f643892013-03-11 16:04:49.885 UTCd918190e-e622-4a0b-9250-72eb848634102013-03-14 12:48:25.173 UTC5204bb4c-f7f4-4aab-9711-033e2d602a8d2013-04-17 14:08:35.178 UTC1b5aa566-f223-45f9-a620-e45b70937ed92012-05-04 15:00:25.845 UTC155531b2-237e-41e4-9e95-380eeeb3eb9d2012-07-04 12:06:00.819 UTC45ad9b93-86b7-4fc1-9995-e8679e8766162012-07-05 07:33:33.411 UTC4294c826-dece-49ef-b5b4-70e50b3167e12012-07-02 14:36:07.356 UTC8c7a95b0-103e-4464-87ae-a1935465558a2012-05-03 22:26:01.115 UTC03a60196-a110-4f68-a25e-299742be50302013-03-14 13:05:40.487 UTC6b1c5a9b-e65b-47f8-9943-43d3ba49794f2012-07-05 12:16:12.134 UTCRaster SHIM service2012-05-03 23:43:53.426 UTC27a0e04a-d3c1-4042-8fa1-ffdee60dfd512013-07-08 14:15:50.411 UTC23c7168c-abb9-428b-9888-4b841d08dd962012-07-05 12:22:55.761 UTC2a2c4c10-8c86-444f-8e20-55fb0b7f21db2012-07-05 07:32:02.578 UTC063a15bf-4748-474c-a987-500c180e742e2013-04-26 13:58:53.610 UTC82e02dfd-ec23-4655-baa7-9a75e3e723c22012-12-19 22:49:33.778 UTC