Workflow13stage_matrix11 text/rdf+n3 <> <http://www.semanticweb.org/ontologies/2012/11/popmod.owl#carriesInputType> <http://www.semanticweb.org/ontologies/2012/11/popmod.owl#StageMatrix> . 2013-03-14 13:20:11.793 UTC columns_fecundity11 text/rdf+n3 <> <http://www.semanticweb.org/ontologies/2012/11/popmod.owl#carriesInputType> <http://www.semanticweb.org/ontologies/2012/11/popmod.owl#FecundityColumns> . 2013-03-14 13:20:03.572 UTC rows_fecundity11 text/rdf+n3 <> <http://www.semanticweb.org/ontologies/2012/11/popmod.owl#carriesInputType> <http://www.semanticweb.org/ontologies/2012/11/popmod.owl#FecundityRows> . 2013-03-14 13:20:08.652 UTC result text/rdf+n3 <> <http://www.semanticweb.org/ontologies/2012/11/popmod.owl#carriesResultType> <http://www.semanticweb.org/ontologies/2012/11/popmod.owl#FundamentalMatrix> . 2013-03-14 13:20:26.650 UTC DisplayFundamentalMatrixinput1output00net.sf.taverna.t2.activitiesrshell-activity1.4net.sf.taverna.t2.activities.rshell.RshellActivity input 1 false output 0 0 false springer.grid.cf.ac.uk 6311 false false input R_EXP output TEXT_FILE net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFundamental_matrixstage_matrix1columns_fecundity1rows_fecundity1fundamental_matrix11 Age specific survival or fundamental analysis. This workflow gives the basic information on age-specific survival, this includes the fundamental matrix (N): is the mean of the time spent in each stage class, the Variance (var): is the variance in the amount of time spent in each stage class, the Coefficient of variation (cv): is the coefficient of variation of the time spent in each class (sd/mean- the ratio of the standard deviation to the mean), Meaneta: is the mean of time to death, of life expectancy of each stage and Vareta: is the variance of time to death. (see outputs: Age specific survival). 2012-11-01 10:11:32.593 UTC net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBeanshellnet.sf.taverna.t2.activities.beanshell.BeanshellActivity workflow springer.grid.cf.ac.uk 6311 false false stage_matrix R_EXP rows DOUBLE_LIST columns DOUBLE_LIST a R_EXP net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokefundamental_matrixcolumnscolumns_fecundityfundamental_matrixrowsrows_fecundityfundamental_matrixstage_matrixstage_matrixfundamental_matrixfundamental_matrixa 5d52fc73-4937-4ab4-a7fb-ff38d0384a11 2012-10-30 07:01:53.978 UTC 3da39227-d90d-44b6-93e6-a5c6c6635c28 2012-03-30 15:42:09.674 UTC 068f4c47-ac93-41d1-928b-e5313ddf7dc9 2012-03-30 15:27:01.885 UTC 252c40b1-ea29-47e7-bf0f-3af7aab03d0c 2012-10-10 12:47:26.968 UTC 7bb65b13-5427-4b64-bf88-b97ba2bd87c8 2012-10-11 11:57:47.796 UTC 1d18264c-9c31-446e-b5fe-faf419d8697b 2012-10-03 14:35:35.765 UTC 5ddec6d6-2ef8-4a1b-8905-4ebc313e8a5f 2012-03-30 15:53:45.576 UTC 514adf8d-61fa-467f-9395-f5979832478d 2012-10-10 12:42:45.593 UTC Maria Paula Balcázar-Vargas, Jonathan Giddy and Gerard Oostermeijer 2012-10-10 12:20:09.765 UTC The fundamental matrix workflow gives the basic information on age-specific survival, this includes the mean, variance and coefficient of variation (cv) of the time spent in each stage class and the mean and variance of the time to death. Fundamental matrix (N): is the mean of the time spent in each stage class Variance (var): is the variance in the amount of time spent in each stage class. Coefficient of variation (cv): is the coefficient of variation of the time spent in each class (sd/mean- the ratio of the standart deviation to the mean) Meaneta: is the mean of time to death, of life expectancy of each stage. Vareta: is the variance of time to death For more information see: Caswell, H. 2001. Matrix population models: Construction, analysis and interpretation, 2nd Edition. Sinauer Associates, Sunderland, Massachusetts (pag 118-120) 2012-10-10 12:35:37.812 UTC 482df01a-aece-421a-87e6-87c6fed3098c 2012-04-27 06:16:05.128 UTC 64fd75c1-1560-485f-9e95-f556f284ea0a 2012-10-03 14:35:02.156 UTC 028669ad-d798-4123-bf4a-b99951b64e18 2012-10-11 11:46:36.203 UTC 573c3e8c-5192-4dcd-a1b1-4c69d93185d8 2012-10-03 13:17:26.78 UTC db524ca2-dc25-4036-b866-fb6f2449f18b 2012-09-28 15:07:54.812 UTC ae90fa83-15d4-42a1-b5fc-75f5b0540555 2012-09-26 14:28:58.906 UTC Fundamental matrix 2012-09-26 14:05:47.140 UTC 5ad8da23-95d6-4f62-b1fc-82689c17ffd7 2012-03-30 15:52:40.327 UTC 88ba65a7-98b4-4f47-89d6-836e7c1fa9c1 2012-09-26 14:26:56.765 UTC 8237763e-e3d3-4a89-8154-c0e7ebe6ac99 2012-03-30 15:58:10.751 UTC e4416b66-0517-4982-9ffc-07d9225b4cb4 2012-04-27 10:20:27.369 UTC 85e5205a-e20f-42a5-85b6-857a1bcf6751 2012-04-27 10:04:31.201 UTC 29186c39-3022-4d52-90d0-8f7fd7bcef27 2012-03-30 15:47:32.455 UTC 553eb85d-393a-488a-84ae-6190b23e80cc 2012-03-30 15:56:49.708 UTC 67f6d5fc-c41e-4a15-aa70-06a91d869ca3 2012-09-26 14:09:13.187 UTC 09f91d33-9f50-4983-96c9-1335ed1f92b4 2012-04-27 06:19:38.161 UTC 03f85255-cd88-4d89-b6b6-40c5c6eae7f5 2012-10-10 12:59:26.406 UTC fae44800-e1c6-41e0-9784-aa2a44d75751 2012-09-28 12:28:31.62 UTC 5af80ab8-1db1-4552-a538-92256862e14e 2012-09-26 14:20:30.218 UTC 73569abf-949f-48f6-92cf-9d91b9b9fc5b 2012-10-10 12:59:04.609 UTC e1d1c2a5-29c1-4939-b4b2-0980a2dceaea 2012-10-10 12:30:26.453 UTC 26a58a12-7058-4ecc-8626-8f4208df050d 2012-04-27 06:37:14.879 UTC 348192ff-7a44-4a75-a3b4-af3adf25ea2b 2012-04-27 06:08:00.914 UTC 4953ee13-f5cd-4472-9bc9-19401eef9af4 2012-10-11 12:39:20.734 UTC 554ae0b3-6ab6-4242-9607-94afd162770d 2012-10-03 13:28:40.515 UTC 6a5c611c-cfcf-4964-9c89-f254b5521e15 2012-04-26 16:16:27.814 UTC 044bc39f-c00c-4683-aec3-9b467473c894 2012-10-10 12:44:06.562 UTC 02ba332a-4054-4142-88ef-9d17ab76aa38 2012-10-10 12:43:36.218 UTC 808d955e-b242-463f-9ab0-3e5526d24391 2012-10-30 07:03:42.367 UTC 1e66a160-d9a3-485d-b31e-cac2c674a296 2012-03-30 15:59:19.350 UTC f4dfa9b1-5f6a-46a6-a7ab-5a660a1735eb 2012-04-27 06:33:44.26 UTC e4172fb8-fbf4-4a13-aad8-b4ea9a55fcaa 2012-09-28 15:08:43.718 UTC