Chemical term extractor - text2structure
Created: 2013-04-22 07:39:33
Last updated: 2013-04-22 07:42:25
Download WorkflowThis workflow demonstrates how to extract biological and chemical terms (text!) from a PDF file using the KNIME text processing nodes and attempts to convert the chemistry terms to structures.
Requirements:
KNIME 2.7.4
KNIME Labs nodes - Text Processing
Community Nodes - RDKit (to view structures)
See http://tech.knime.org/community
Start by selecting the folder containing the PDF documents. Alternatively, you can use a folder with Word docs.
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