get seq and blast

Created: 2008-07-24 15:14:01 Last updated: 2008-07-24 15:18:32

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Workflow Components

Inputs (1)

Name	Description
geneIdentifier

Processors (4)

Name	Type	Description
Get_Protein_FASTA	local
searchSimple	arbitrarywsdl	Execute Blast
program	stringconstant
database	stringconstant

Beanshells (0)

Outputs (1)

Name	Description
blast_report

Links (5)

Source	Sink
geneIdentifier	Get_Protein_FASTA:id
Get_Protein_FASTA:outputText	searchSimple:query
database:value	searchSimple:database
program:value	searchSimple:program
searchSimple:Result	blast_report

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Taverna 1

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Daniel Zadik

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Daniel Zadik

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710 viewings

1371 downloads

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get seq and blast

Created by Daniel Zadik on Thursday 24 July 2008 15:14:01 (UTC)

Last edited by Daniel Zadik on Thursday 24 July 2008 15:18:32 (UTC)

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Daniel Zadik	Thursday 24 July 2008 15:15:06 (UTC)
	example workflow written during the tutorial

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Perform a sequence similarity search using the BLAST algorithm through the DDBJ web service. Example input for this service are given below. query: >MySequence MATDDSIIVLDDDDEDEAAAQPGPSNLPPNPASTGPGPGLSQQATGLSEPRVDGGSS NSGSRKCYKLDNEKLFEEFLELCKTETSDHPEVVPFLHKLQQRAQSVFLASAEFCNIL SRVLARSRKRPAKIYVYINELCTVLKAHSIKKKLNLAPAASTTSEASGPNPPTEPPSDLT NTENTASEASRTRGSRRQIQRLEQLLALYVAEIRRLQEKELDLSELDDPDSSYLQEAR LKRKLIRLFGRLCELKDCSSLTGRVIEQRIPYRGTRYPEVNRRIERLINKPGLDTFPDY GDVLRAVEKAATRHSLGLP...

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