Select_Model_For_Me_MSA_fasta00 >ABY27676/1-453 ABY27676 ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------TTAATATTAGGA GCTCCAGATATAGCTTTTCCTCGAATAAATAATCTTAGTTTTTGGTTGCTTCCTCCTTCTTTGATTTTATTA ATAATTTCTTCAATAGTGGAGATAGGGGTTGGGGCGGGGTGAACTATTTATCCTCCTTTATCGGGTAGTCTA GGTCATTCAGGGGTTTCAGTAGATTTAGCTATTTTTAGCTTACATTTGGCGGGAGCTTCTTCAATTATAGGA GCAATTAATTTTATTTCCACTATTTTAAATATACGTTCAGTTGGGATATCTATAGATAAGGTACCTTTATTT GTGTGATCTGTATTAGTTACTGCTGTTTTATTATTATTATCTTTACCAGTTTTAGCCTGGGGTATTACGATA TTATTAACAGATCGAAATTTTAACACTTCTTTTTTTGACCCTGCGGGTGGAGGTGATCCAATTTTATTTCAA CATCTTTTT >ADW61587/1-657 ADW61587 ACGTTATATTTAATATTTGGGGCTTGAGCTGCTATAGTAGGAACAGCCATAAGAGTATTAATTCGAATTGAA TTAGGTCAACCTGGGAGGTTTATTGGGGATGATCAATTATATAATGTAATCGTTACTGCTCATGCATTTGTT ATAATTTTTTTTATAGTAATACCTATTTTGATTGGAGGATTTGGAAATTGATTAGTTCCTTTAATATTAGGC GCTCCTGATATAGCTTTTCCTCGTATAAATAATTTAAGATTTTGGCTACTCCCTCCTTCATTATTTTTATTA ATTATTTCTTCTATAGTAGAAATGGGAGTGGGGGCAGGATGGACGGTTTATCCTCCTTTAGCTAGTTTAGAG GGCCATGCTGGCAGGTCAGTGGATTTTGCTATTTTTTCTTTACATTTAGCGGGGGCCTCCTCTATTATGGGG GCTATTAATTTTATTTCTACTATTATTAATATACGATCGCATGGAATAACTATAGAAAAAGTACCTTTATTT GTATGATCAGTATTGATTACTGCTGTATTATTATTATTATCACTTCCAGTATTGGCGGGGGCTATCACAATA TTATTAACTGATCGAAATTTTAATACTTCGTTTTTTGACCCTTCAGGAGGGGGGGATCCAATCCTTTTCCAA CATTTATTT >AEE92862/1-657 AEE92862 ACGTTATATTTTGTTTTTGGAGCTTGATCTGCTATGGTAGGGACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGGAGATTGTTGGGTGATGATCATATATATAATGTTATGGTAACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTACTGCCTTTAATAGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCACCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACCACTATTATTAATATGCGTACAAATGGTATAACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTATTGTCTTTACCAGTATTGGCGGGGGCTATTACGATA TTACTAACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAG CATTTATTT >AEC60810/1-657 AEC60810 ACTTTGTATTTATTGTTTGGTATTTGATCTGCTATAATGGGAACGGCAATAAGAGTGATTATTCGAATTGAA TTAGGTCAAGTTGGAAGATTGTTGGGTGATGATCATTTATATAATGTAATTGTAACAGCACATGCTTTGGTT ATGATTTTTTTTATAGTTATACCGATTTTGATTGGTGGATTTGGAAATTGAATAGTTCCTTTGATGTTAGGT GCTCCAGATATAGCATTCCCACGTATAAATAATTTGAGATTTTGATTGCTTCCTCCATCATTATTTTTGTTA TTATTATCTTCTTTAACAGATGTAGGGGTTGGAGCCGGGTGAACTATTTATCCTCCTTTATCCTCTGGGGTT GGACATAGAGGGGGGGGGATGGATTTTGCTATTTTTTCTTTACATTTAGCAGGAGCTTCATCTATTATAGGG GCGATTAATTTTATTACAACAATTATTAATATGCGAAGATTTGGAATAACAATAGAACGTGTACCTTTATTT GTGTGATCAGTTCTTATTACTACTATTTTATTATTGCTTTCTTTACCTGTATTGGCTGGTGCTATTACTATA TTGTTGACTGATCGAAATTTCAATACTTCTTTTTTTGATCCTGCTGGAGGTGGTGATCCTATTTTGTTTCAA CATTTATTT >AEE92861/1-633 AEE92861 ------------------------TGATCTGCTATGGTAGGTACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGAATATTATTAGGTGATGATCATATATATAATGTTATGGTTACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTATTGCCTTTAATGGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCTCCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACTACTATTATTAATATGCGTACAAATGGTATGACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTGTTGTCTTTGCCAGTATTGGCGGGGGCTATTACAATA TTATTGACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAA CATTTATTT >AEE92860/1-648 AEE92860 ---------TTTGTTTTTGGAGCTTGATCTGCTATGGTAGGTACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGAAGATTATTAGGTGATGATCATATATATAATGTTATGGTTACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTATTGCCTTTAATGGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCTCCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACTACTATTATTAATATGCGTACAAATGGTATGACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTGTTGTCTTTGCCAGTATTGGCGGGGGCTATTACAATA TTATTGACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAA CATTTATTT >ADD09384/1-555 ADD09384 ------------------------------------------------------------------------ ------------------------------TATCAGCTATACAATGTATTAATTACCGCTCATGCTATAATT ATGGTATTTTTCATGATTATGCCAGCTTTATTTGGTGGATTTGGTAATTACTTTGTACCAATTTTAATAGGT GCCCCGGATATGGCTTTTCCTAGGCTAAATAATATAAGTTTTTGGCTACTTGTCCCTGCTTTTATATTATTA ATGCTGTCAGGTTTGGTTGATGGAGGAGCTGGTACTGGCTGGACACTGTATCCTCCTCTAAGTAGTATAGTA GGGCATCCTGGCGCTGCTGTCGATATGGCTATTTTAAGCTTACATCTTACAGGGCTTTCCTCCATTCTTGGT TCAATTAATATGATTGTCACTATCTTTAATATGAGAACTGATGGTATGGGGTTATTTGAAATGCCCTTATTT GTTTGGTCAATTTTGGTTACTGCCTTCTTGCTGATACTAGCAATTCCTGTGTTAGGGGGTGCAATAACCATG TTACTGACTGATCGAAATTTTGGTACTACTTTTTTCAAGCCTGATGGTGGCGGAGATCCAGTGTTATTTCAG CATTTATTT >ADJ82639/1-645 ADJ82639 ACTTTATATTTAATGTTTGGGGTTTGGTCAGCTATAATAGGAACTGCTATAAGAGTATTAATTCGAATGGAA TTAGGGAATCCTGGTAGATTGTTAGGTGATGATCATTTGTATAATGTTATAGTTACTGCTCATGCTTTTGTA ATAATTTTTTTTATAGTAATGCCTATTCTTATTGGAGGTTTTGGAAATTGATTAGTTCCTTTAATATTAGGA GCTCCAGATATATCATTTCCTCGAATAAATAATCTTTCTTTTTGATTATTACCTCCTTCTTTATTTTTGTTA TCTATATCTTCTATAGTAGAAATAGGAGTTGGGGCTGGGTGAACTGTTTATCCTCCTTTAGCGTCTACAGTT GGGCACATAGGAAATTCAATAGATTTTGCTATTTTTTCTCTTCATTTAGCTGGAGCTTCTTCTATTATAGGA GCTGTAAATTTTATTTCTACCATTATTAATATACGAATATTAGGAATATCTATAGAGAAGGTTCCTCTTTTT GTTTGATCAGTTTTAATTACAGCAGTATTATTATTACTTTCTTTACCTGTTTTAGCAGGTGCTATTACTATA TTATTAACAGATCGAAATTTTAATACTTCTTTTTTTGATCCTGCTGGGGGAGGAGATCCTAATTTATTT--- --------- >ADQ21240/1-648 ADQ21240 AGATTATATTTTGTTTTTGGGGCTTGAGCTGCTATAGTAGGAACAGCAATAAGAGTATTAATTCGTGTTGAG TTGGGACAAACTGGTAGTTTGTTAGGGGATGATCAGTTGTATAATGTTATTGTTACGGCTCATGCTTTTGTA ATAATTTTTTTTATAGTTATGCCTATTTTAATTGGGGGTTTTGGAAATTGGCTGATTCCACTAATACTAGGA GCTCCGGATATAGCTTTCCCTCGTATAAATAATTTGAGATTTTGGCTTTTACCCCCTTCTTTATTATTACTG TTTATTTCAAGCATAGATGAGATAGGAGTGGGGGCGGGATGAACGGTTTACCCCCCTCTTGCCTCTTTAGAG GGACATTCTGGTAGTTCAGTAGATTTTGCTATTTTTTCTTTACACTTAGCTGGAGCGTCTTCTATTATAGGG GCTATTAATTTTATTTCCACAATTTTGAATATACGGGGTTATGGAATATCTATAGAAAAAGTACCTTTATTT GTTTGGTCCGTGTTAATTACAGCTGTATTATTATTGTTATCTCTTCCTGTGTTAGCTGGGGCTATCACAATA TTACTGACGGATCGTAATTTTAATACTTCATTTTTTGATCCTTGTGGGGGGGGGGATCCTGTTTTGTTTCAA --------- >AEE92882/1-657 AEE92882 ACGTTATATTTTGTTTTTGGAGCTTGATCTGCTATGGTAGGGACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGGAGATTGTTGGGTGATGATCATATATATAATGTTATTGTAACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTACTGCCTTTAATAGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCACCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACCACTATTATTAATATGCGTACAAATGGTATAACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTATTGTCTTTACCAGTATTGGCGGGGGCTATTACGATA TTACTAACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAG CATTTATTT >ADW58691/1-657 ADW58691 ACTTTATATTTAATATTTGGAGCTTGATCTGCTATAGTAGGGACTGCTATAAGAGTGTTAATTCGAATAGAA TTAGGTCAATCTGGAAGACTTTTAGGTGATGATCATTTATATAATGTTGTAGTTACTGCACATGCTTTTGTT ATAATTTTTTTTATAGTTATACCTATTTTGATTGGTGGTTTTGGAAATTGGTTAGTTCCTTTAATATTAGGT GCTCCTGATATAGCTTTTCCTCGAATAAATAATTTAAGTTTTTGATTATTACCTCCTTCTTTATTTTTATTA TTTATTTCTTCTATAGTTGAAATAGGAGTTGGAGCAGGATGAACAGTTTATCCTCCATTGGCATCTAGTGTA GGTCATATGGGAAGTGCAATAGATTTTGCTATTTTTTCATTACATTTGGCTGGTGCTTCTTCTATTATAGGA GCAGTAAATTTTATTACTACTATTATTAATATACGTTCTCATGGAATAAGAATAGAAAAAGTTCCTTTATTT GTTTGATCAGTTTTAATTACAGCTATTTTGTTGTTATTATCTTTACCTGTTTTAGCAGGTGCTATTACTATA TTATTAACTGATCGTAATTTTAATACTTCTTTTTTTGATCCTGCTGGAGGAGGAGATCCTATTTTATTTCAA CATTTATTT >ADW58631/1-657 ADW58631 ACTTTATATTTAATATTTGGAGCTTGATCTGCTATAGTAGGGACTGCTATAAGAGTGTTAATTCGAATAGAA TTAGGTCAATCTGGAAGACTTTTAGGTGATGATCATTTATATAATGTTGTAGTTACTGCACATGCTTTTGTT ATAATTTTTTTTATAGTTATACCTATTTTGATTGGTGGTTTTGGAAATTGGTTAGTTCCTTTAATATTAGGT GCTCCTGATATAGCTTTTCCTCGAATAAATAATTTAAGTTTTTGATTACTACCTCCTTCTTTATTTTTATTA TTTATTTCTTCTATAGCTGAAATAGGAGTTGGAGCAGGATGAACAGTTTATCCTCCATTGGCATCTAGTGTA GGTCATATAGGAAGTGCAATAGATTTTGCTATTTTTTCATTACATTTGGCTGGTGCTTCTTCTATTATAGGA GCAGTAAATTTTATTACTACTATTATTAATATACGTTCTCATGGAATAAGAATAGAAAAAGTTCCTTTATTT GTTTGATCAGTTTTAATTACAGCTATTTTGTTGTTATTATCTTTACCTGTTTTAGCAGGTGCTATTACTATA TTATTAACTGATCGTAATTTTAATACTTCTTTTTTTGATCCTGCTGGAGGAGGAGATCCTATTTTATTTCAA CATTTATTT >ACM89220/1-657 ACM89220 ACTTTATATTTTTTATTTGGTACTTGATCAGCAATAATTGGTACAGCAATAAGTGTTTTAATTCGTGTTGAA CTAGGATTTTCTGGAAGATTTTTAGGTGATGATCATTTATATAATGTAATTGTTACTGCTCATGCTTTTATT ATAATTTTTTTTATAGTTATACCTATTTTAATTGGTGGTTTTGGAAATTGGTTAGTTCCTTTAATATTAAGA GCTCCAGATATAGCTTTTCCTCGTATAAATAATTTAAGATTTTGGTTACTACCTCCTTCGTTATTATTGTTA TTTATTTCTTCTATGGTTGAAATCGGAGTTGGAGCAGGGTGGACTATTTATCCTCCTTTATCTTCTTCTGTG GGTCATTCTGGTGCATCTATGGATTTTGCAATTTTTTCTCTTCATTTAGCTGGTGCTTCTTCTATTATAGGT GCTATTAATTTTATTTCAACAATTATTAATATACGACCTTATGGTATAAGAATAGAAAAGATTCCTTTATTT GTATGATCTGTATTAATTACAGCTGTCTTATTATTATTATCATTACCAGTATTAGCTGGGGCTATTACTATA CTTTTAACTGATCGTAATTTTAATACTTCTTTTTTTGATCCAGCTGGGGGTGGGGATCCAATTTTATTTCAG CATTTATTT >AEE92867/1-642 AEE92867 ---------------TTTGGGGCTTGATCTGCTATGGTAGGTACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGAAGATTATTAGGTGATGATCATATATATAATGTTATGGTTACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTATTGCCTTTAATGGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCTCCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACTACTATTATTAATATGCGTACAAATGGTATGACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTGTTGTCTTTGCCAGTATTGGCGGGGGCTATTACAATA TTATTGACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAA CATTTATTT >ADH12119/1-645 ADH12119 ACTTTATACTTGGTTTTTGGTGCTTGAGCGGCTATGGTTGGAACTGCAATAAGTGTTTTAATTCGAATTGAG TTGGGGCAATCTGGTAGATTTATGGGAGATGATCAGTTGTATAATGTTATTGTAACTGCTCATGCTTTTGTT ATAATTTTTTTTATGGTTATGCCTATTTTGATTGGGGGCTTTGGTAATTGACTGGTTCCTTTGATGTTGGGG GCTCCTGATATGGCTTTTCCTCGCATGAATAATTTAAGGTTTTGATTATTGCCTCCTTCTTTATTTTTATTA TTTATTTCTTCTATGGTGGAAATAGGGGTTGGGGCTGGTTGAACGATCTACCCTCCTTTAGCGTCTCTAGAA GGACATTCAGGAAGTTCGGTTGATTTTGCCATTTTTTCTTTGCATTTGGCTGGGGCCTCTTCTATTATAGGG GCTATTAATTTTATTTCTACAATTTTGAATATACGGTCTTATGGGATGTCTATGGAAAAAGTTCCTTTGTTT GTTTGGTCGGTTTTAATTACTGCTGTTTTGCTCCTATTATCACTTCCGGTTTTAGCTGGGGCTATCACTATG TTATTAACTGATCGAAATTTTAATACATCGTTTTTTGATCCTTCGGGGGGAGGGGATCCTATTTTTTTT--- --------- 2013-02-19 10:49:56.589 UTC Multiple Sequence Alignment in Fasta format 2013-02-19 10:49:24.341 UTC Possible_Partition00 Partitioning of the MSA using nexus/raxml syntax. Define at least 2 partitions. Partition could define codon positions and/or gene boundaries and/or domains 2013-08-09 10:46:18.147 UTC Gene1_pos1 = 1-657\3; Gene1_pos2 = 2-657\3; Gene1_pos3 = 3-657\3; 2013-02-19 10:48:53.331 UTC Statistical_Criterium00 What statistical criterium should be used to compare different models? AIC = Aikake information Criterium AICc =Aikake information Criterium correct per sample size BIC = Bayesian Information Criterium 3 possible values: AIC, AICc, or BIC 2013-05-16 14:39:16.341 UTC AIC 2013-05-16 14:39:40.352 UTC Number_of_runs00 2 2013-05-16 14:41:18.758 UTC Number of independent runs to check convergence of the markovian integration necessary to perform bayesian phylogenetic inference. Minimum value 2. Always an integer 2013-08-09 10:47:12.935 UTC Number_of_MCMCMC_generations00 100000 2013-05-16 14:42:40.370 UTC Number of Generation for each run of the markovian integration necessary to the phylogenetic inference. The convergence test (GeoKS) will tell post hoc if the number was sufficient. If is not the case try with a larger number following the educated guess of GeoKS 2013-08-09 10:48:48.14 UTC File_name00 pippo 2013-05-16 14:43:50.324 UTC Filename for nexus input file 2013-08-09 10:49:26.885 UTC Linking_branches00 Should models assume that branches in the tree are linked or unlinked across alignment parts? Two possible strings: linked unlinked 2013-08-09 10:49:59.869 UTC linked 2013-05-16 14:37:51.905 UTC SampleSize00 Sample Size from the Posterior Distribution to test fit of model on Data. This integer should be smaller than number of generation divided by 100. 2013-05-17 12:50:34.889 UTC 100 2013-05-17 12:50:37.808 UTC Plot Result of the Posterior Predictive test. Histogram of the distribution of the complexities (log of sum of sites entropy or maximal possible loglikelihood score) of the simulated data using the posterior distribution parameters compared with observed data complexity. The 1-alpha high posterior density of the distribution show the region where simulate data complexity match the observed one. Larger observed complexity indicates model too simplistic, while the contrary indicates overparametrization of the model. 2013-02-19 10:52:20.291 UTC newickTree small xml with tag res with one or more tag tree each one with a body that contain a tree in netwick format. each tree represent the consensus for a given partition of group of partition in the same order that are cited in the nexus input file of mrbayes 2013-02-19 10:51:48.519 UTC <res><tree>(ADD09384_1_555_ADD09384:1.18452,ABY27676_1_453_ABY27676:0.16674,(ACM89220_1_657_ACM89220:0.16271,(ADJ82639_1_645_ADJ82639:0.15654,(ADW58631_1_657_ADW58631:0.00298,ADW58691_1_657_ADW58691:0.00584)1.00:0.07383)0.98:0.04988,(ADW61587_1_657_ADW61587:0.10163,(ADH12119_1_645_ADH12119:0.14993,ADQ21240_1_648_ADQ21240:0.15645)0.90:0.06174)0.89:0.07555,(AEC60810_1_657_AEC60810:0.13396,((AEE92862_1_657_AEE92862:0.00180,AEE92882_1_657_AEE92882:0.00294)0.93:0.01820,(AEE92860_1_648_AEE92860:0.00172,AEE92867_1_642_AEE92867:0.00260,AEE92861_1_633_AEE92861:0.00326)0.85:0.01568)1.00:0.18625)0.99:0.14972)0.63:0.13345);</tree></res> 2013-02-19 10:51:25.542 UTC Geoks <result><success>True</success><burnin>16</burnin><pvalues>0.962205</pvalues></result> 2013-02-20 12:54:16.872 UTC Result of the GeoKS test of convergence. XML format 2013-06-13 09:52:20.508 UTC PhyloInferenceOutput The output of the consensus service is a path were to obtain a zipped folder that includes all output from phylogenetic inference and the one of the consensus 2013-03-28 09:58:51.285 UTC ViewTree Link to visualize consensus Tree of phylogenetic inference. It could be more than one link if the model assume more than one tree (combination topology + branch length set). Use of the figure in the link below should be always accompagned by appropriate citation: Letunic I and Bork P (2011) Nucleic Acids Res doi: 10.1093/nar/gkr201 Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy 2013-06-20 15:46:31.156 UTC MrBayesOutput original output of mrbayes 2013-06-06 13:15:48.770 UTC DetailsPPtest Numeric Result of the Posterior Predictive test. 2013-06-13 09:17:39.155 UTC PartitionFinderOutput Main output of PartitionFinder, where the preffered partitioned model is described 2013-06-14 15:59:48.203 UTC PartitionFinderDetails Path were to retrieve all the detials of the partitionfinder software 2013-06-14 15:59:15.966 UTC GeoKSDetails Path were to get all details of convergence test calculation. 2013-06-14 15:55:50.773 UTC logSelectingEvolutionaryModelWithPartFinderStatCriterium0PossiblePartition0MSA_fasta0NumberRuns0MCMCMCGenerationNumber0LinkingBranches0Token0Path00PartitionFinderOuput00MrBayesInput00Log00 http://www.myexperiment.org/workflows/3943.html 2013-12-20 12:37:59.761 UTC net.sf.taverna.t2.componentcomponent-activity1.1.2net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org BayesianPhylogeneticInference SelectingEvolutionaryModelWithPartFinder 15 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMrBayesPath2MrBayesInputFile0PathOfResultsFolder00Log00net.sf.taverna.t2.componentcomponent-activity1.1.2net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org BayesianPhylogeneticInference MrBayes 7 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeJSTWebDav3InputInputBody0Token0File_name0REST_Service_redirection00 http://www.myexperiment.org/workflows/3942.html 2013-12-20 12:39:50.632 UTC net.sf.taverna.t2.componentcomponent-activity1.1.2net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org JSTInteraction JSTWebDav3Input 3 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRandGenout00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity out 0 0 workflow org.embl.ebi.escience.scuflworkers.java.TestSometimesFails UserNameHere 2013-05-27 13:52:26.399 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConVergenceTreeDiagnosticGeoKSMrBayesOuputPath0Success00OutputPath00NiceXML11Burnin00Log00 http://www.myexperiment.org/workflows/3945.html 2013-12-20 12:42:09.965 UTC net.sf.taverna.t2.componentcomponent-activity1.1.2net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org BayesianPhylogeneticInference ConVergenceTreeDiagnosticGeoKS 10 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecondition_checkercondition0pass_flags11fail_flags11 This service checks if the condition is "true" and if so outputs a value in the pass_flags list and leaves the fail_flags empty. If the condition is not true then the service outputs a value in the fail_flags list and leaves the pass_flags empty. 2011-11-15 09:59:22.100 UTC net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity condition 0 text/plain java.lang.String true pass_flags 1 1 fail_flags 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSuccess_checkSentinel0net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConsensusTreeMrBayesFolder0BurnIn0Trees11ResultsFolder00Log00 http://www.myexperiment.org/workflows/3946.html 2013-12-20 12:43:08.328 UTC net.sf.taverna.t2.componentcomponent-activity1.1.2net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org BayesianPhylogeneticInference ConsensusTree 10 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeTreeVisualizationItoltreefile0html00Log00 http://www.myexperiment.org/workflows/3947.html 2013-12-20 12:54:51.468 UTC net.sf.taverna.t2.componentcomponent-activity1.1.2net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org BayesianPhylogeneticInference TreeVisualizationItol 9 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMrBayesPPtestBurnin0SampleSize0MrBayesOutputFolder0NameRun0Plot00PPtestDetails00Log00 http://www.myexperiment.org/workflows/3952.html 2013-12-20 12:42:49.644 UTC net.sf.taverna.t2.componentcomponent-activity1.1.2net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org BayesianPhylogeneticInference MrBayesPPtest 8 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeNoSpacestring0out100net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity string 0 text/plain java.lang.String true out1 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeTargetOnlystring0out100net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity string 0 text/plain java.lang.String true out1 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFailure_checkSentinel0net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_List_Unionlist11list21union11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity list1 1 l('text/plain') java.lang.String true list2 1 l('text/plain') java.lang.String true union 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.StringSetUnion net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSelectingEvolutionaryModelWithPartFinderStatCriteriumStatistical_CriteriumSelectingEvolutionaryModelWithPartFinderPossiblePartitionPossible_PartitionSelectingEvolutionaryModelWithPartFinderMSA_fastaMSA_fastaSelectingEvolutionaryModelWithPartFinderNumberRunsNumber_of_runsSelectingEvolutionaryModelWithPartFinderMCMCMCGenerationNumberNumber_of_MCMCMC_generationsSelectingEvolutionaryModelWithPartFinderLinkingBranchesLinking_branchesSelectingEvolutionaryModelWithPartFinderTokenRandGenoutMrBayesPath2MrBayesInputFileJSTWebDav3InputREST_Service_redirectionJSTWebDav3InputInputBodySelectingEvolutionaryModelWithPartFinderMrBayesInputJSTWebDav3InputTokenRandGenoutJSTWebDav3InputFile_nameNoSpaceout1ConVergenceTreeDiagnosticGeoKSMrBayesOuputPathMrBayesPathOfResultsFoldercondition_checkerconditionConVergenceTreeDiagnosticGeoKSSuccessSuccess_checkSentinelcondition_checkerpass_flagsConsensusTreeMrBayesFolderMrBayesPathOfResultsFolderConsensusTreeBurnInConVergenceTreeDiagnosticGeoKSBurninTreeVisualizationItoltreefileConsensusTreeTreesMrBayesPPtestBurninConVergenceTreeDiagnosticGeoKSBurninMrBayesPPtestSampleSizeSampleSizeMrBayesPPtestMrBayesOutputFolderMrBayesPathOfResultsFolderMrBayesPPtestNameRunTargetOnlyout1NoSpacestringFile_nameTargetOnlystringJSTWebDav3InputREST_Service_redirectionFailure_checkSentinelcondition_checkerfail_flagsString_List_Unionlist2TreeVisualizationItolLogString_List_Unionlist1MrBayesPPtestLogString_List_Unionlist1ConsensusTreeLogString_List_Unionlist1ConVergenceTreeDiagnosticGeoKSLogString_List_Unionlist1SelectingEvolutionaryModelWithPartFinderLogString_List_Unionlist1MrBayesLogPlotMrBayesPPtestPlotnewickTreeConsensusTreeTreesGeoksConVergenceTreeDiagnosticGeoKSNiceXMLPhyloInferenceOutputConsensusTreeResultsFolderViewTreeTreeVisualizationItolhtmlMrBayesOutputMrBayesPathOfResultsFolderDetailsPPtestMrBayesPPtestPPtestDetailsPartitionFinderOutputSelectingEvolutionaryModelWithPartFinderPartitionFinderOuputPartitionFinderDetailsSelectingEvolutionaryModelWithPartFinderPathGeoKSDetailsConVergenceTreeDiagnosticGeoKSOutputPathlogString_List_Unionunion 050b977b-3930-4599-8292-73382fbe8f08 2013-05-17 13:47:16.331 UTC 68a058c3-5c4b-4865-b815-3260ed9f5916 2013-12-12 14:34:40.607 UTC c7d70b9c-f3e6-4c25-b351-d638cc13fa1d 2013-12-11 16:13:58.995 UTC 2e37b2d4-2a11-43d7-ae86-2855f889a867 2013-06-04 10:26:47.375 UTC 45b88450-41d3-4f07-a197-0e1abc9bc1fb 2013-12-11 21:13:20.343 UTC 62cb20cc-8ca4-4175-9b9e-0635d38ed14b 2014-01-22 15:27:03.450 UTC 81f78894-7bd6-4ff5-8eb8-dcda2f0f12bf 2013-06-13 09:17:43.404 UTC 03d8d882-866c-4a86-85f1-1c0a266fcfa1 2013-02-19 17:17:37.373 UTC Select Model For Me with components 2013-12-12 13:56:18.705 UTC 81676422-4455-45cb-ad2f-53a2c64922b1 2014-01-22 16:56:09.459 UTC 2813a541-7010-4115-84db-39c44a20c425 2013-02-20 14:17:55.124 UTC ac29b67c-ac1b-430a-afda-982bce0fc451 2013-02-20 14:14:06.10 UTC 69b6d526-4e4d-4fae-bd87-751f43e25d88 2013-12-12 12:23:20.112 UTC 5dc1fb99-d6dc-453e-a1b5-4cb0621ec44c 2013-06-14 15:09:52.865 UTC ec97812d-762d-49bd-9044-63be0669e046 2013-06-06 14:28:24.400 UTC 8016dd82-b2d6-4028-bd51-d01dd6bd9c93 2013-12-12 12:15:24.576 UTC ebc03555-ecd5-4ce6-8391-0cbe5bf94c5f 2013-03-28 09:58:52.51 UTC b2b1fc13-6cfc-4307-b6b1-d1cfc3176850 2013-12-12 13:51:01.345 UTC cd487d97-579b-41f4-8bc6-88371a1703df 2013-02-19 10:52:29.614 UTC a0fabd4f-2e8f-4a2d-bc13-734d4245e0b4 2013-03-25 14:41:42.947 UTC 84fbd1f5-4245-485b-b3f6-d3fd6bc2b9aa 2013-06-04 10:48:01.755 UTC c588ab33-7f5a-459a-8fad-f9d4bac96b63 2013-02-20 11:58:19.43 UTC a9fdc15c-6365-4da6-aac9-d96a9fa5b057 2013-12-11 21:50:22.587 UTC 831b2dc7-d4c8-4eb9-8deb-9af26f4fee4a 2013-06-14 14:38:54.931 UTC 2e735a0a-988b-4bba-9e5d-f02944cd0d24 2013-02-19 11:04:22.96 UTC 99b41795-d4e8-401a-a78a-1045de516057 2013-12-12 13:49:51.929 UTC f1b5bc6c-97b0-4d1b-b4d8-75d4c0c6ccff 2013-05-17 13:43:00.599 UTC dbd742de-f68a-4032-b7ff-7cd4d9ebc48c 2013-12-12 15:43:48.738 UTC 082febfa-e96f-4971-9747-cadbf1b63218 2014-01-22 16:31:28.337 UTC fbcbedbb-cef7-405a-ad36-779697d13244 2014-01-10 15:52:33.329 UTC 79cef4c8-aa90-42eb-bbbc-547d0c65cdf6 2013-06-13 09:52:48.451 UTC b1ec8589-3ac8-4550-aa98-fb66e0661b7a 2013-03-28 09:32:22.151 UTC 5e983db4-8286-4fa1-8f6f-697d985aa3a4 2013-06-14 15:57:51.283 UTC 9418afcd-b09c-4808-b774-f1a15beb036f 2013-12-12 16:54:15.627 UTC 7ab2a17c-aba6-4325-9563-659a9b6a3b2d 2013-05-17 12:55:12.198 UTC 5cfa3f7b-2671-4a85-a4b6-3f4b3e11531d 2013-12-04 16:11:00.517 UTC 17dddb23-51c4-40ae-b2cc-3df209d2c890 2013-06-06 13:15:51.55 UTC 2a1433ad-3a0a-4fce-bc1b-1e1d203e2f4f 2013-05-17 14:01:00.177 UTC c84e4900-42de-460b-8a17-9873da6ff0f8 2013-12-02 16:54:43.531 UTC be4aa380-72a5-46cf-9f80-6afe4881de5b 2013-07-02 13:29:06.880 UTC 7a72c654-5ebe-414b-929f-71b3ca9abc15 2013-12-04 17:03:39.577 UTC a782cf88-d6cf-4202-b503-f5d9aaa1f3ae 2013-12-17 17:19:44.617 UTC saverio vicario giacinto donvito bachir balech 2013-02-19 10:54:10.67 UTC fdebe370-df01-45ee-b953-d307ea7f7611 2013-02-20 12:57:15.288 UTC b80541d1-48a8-4314-9512-98cb5fe1c276 2013-02-20 12:52:49.895 UTC cf28931d-4d12-42f4-9e45-628d73a2fb78 2013-12-11 21:42:42.535 UTC 6805d944-ee9a-4b87-9f82-799e920f991a 2013-06-14 15:26:17.46 UTC af6726b7-c7b3-49eb-bbfe-fec972893903 2014-01-22 15:51:16.80 UTC 2250be3a-4d4e-4514-aafa-aad35e4446c6 2013-12-04 14:56:15.61 UTC 6e506682-948f-4afd-825e-11210323a1d3 2013-06-06 14:50:47.515 UTC 6182d620-536d-46bc-ae91-5e947f50be03 2013-06-14 16:01:05.572 UTC 7aadccb0-4a1b-4486-9b1d-9d39d871405f 2013-06-13 09:16:43.390 UTC 56cf858c-0f6e-4546-a686-6cc2eca8d717 2013-03-27 14:52:38.38 UTC d55a4a20-af19-4ee1-b99c-913455333ef1 2013-05-17 13:24:34.551 UTC 46ead065-bb6f-41d4-af8c-bb7ccffc75e3 2013-02-19 10:50:28.376 UTC f2dc5113-49a1-48b9-a380-89e41fb0b75f 2013-12-12 15:30:11.454 UTC a00e0315-5fb2-4987-a846-bae4bcb7eb61 2013-12-20 12:57:53.466 UTC ad62f78b-11d9-4fb7-907e-ebc3172a3088 2013-06-06 09:09:31.399 UTC 29b620fc-3513-4e3f-bfdc-2be8d750d1e9 2013-12-17 15:12:45.47 UTC 4ddc4723-5f66-4039-9399-2dde19b4c44a 2013-06-13 09:48:49.211 UTC 52bf7648-b38f-495b-bc45-e192b9f22a6b 2013-05-20 11:58:24.949 UTC d129e474-3e47-4788-81f8-c5355a550dec 2013-06-04 09:23:55.392 UTC be219473-b446-4afb-a3ee-b1c7897b9f5d 2013-12-12 15:50:19.827 UTC 209b2582-51a0-46a2-a9c0-95d84a951f78 2013-02-20 12:20:20.688 UTC 3c0f7bc7-b951-4288-98b6-55cae1470d64 2013-03-28 11:13:40.711 UTC 4dc0ca1e-c1f0-403a-84a7-78834f848c49 2014-01-23 10:35:40.955 UTC 5e1346e0-74f7-4d4b-8b71-e1ebbae58d54 2013-05-16 14:44:06.35 UTC 2dbbc8b7-8bb6-4174-995e-bb3e1097a784 2013-03-28 11:31:59.717 UTC 0be154c3-0a4a-4d8e-83d4-d74afa40ee1e 2013-12-17 15:58:43.976 UTC 0df96ea8-813d-432c-b643-b9e88dc392e2 2013-06-14 15:53:14.431 UTC Phylogenetic inference with MrBayes. The the model of evolution is defined with the help of PartitionFinder, inference and test of MCMC convergence (GEOKS) and fit of the model on the data (Posterior Predictive test) 2013-02-20 14:13:46.513 UTC 87b35099-6148-4fa6-8a28-bd5b2e78a287 2013-05-16 12:56:09.759 UTC 1ac652de-6758-4e37-af2e-1afeb6b4901e 2013-05-17 13:47:57.443 UTC 72451b24-0d1b-4880-868a-16210a96f5b7 2014-01-22 21:43:30.755 UTC c4e999ed-e2b1-4675-8acf-7767047c1d92 2013-12-13 12:04:03.657 UTC a2b8e237-d257-4e69-8a6c-9f030c5e5c38 2013-12-11 21:46:06.359 UTC 0a9f163f-c9f6-482e-9e48-76b1971e6520 2013-02-20 12:54:19.239 UTC 51c43011-e9bc-4141-897c-901ae6a00b5a 2013-07-01 13:52:59.199 UTC 3d27e111-0ccf-491f-8619-a0d5c9c9b530 2013-12-12 15:41:59.623 UTC 8d4a38da-0b4e-4360-af18-ee2fd63630a8 2013-12-17 16:28:57.270 UTC 628468bc-0a1e-4f98-9666-880a7a6d7377 2014-01-22 15:21:57.105 UTC ca0f1d3c-efbd-488d-8abd-93fc869c9727 2013-12-12 13:56:29.479 UTC b65fb5fb-4c3b-40ed-a1e5-d2885cb2a39b 2013-02-20 12:18:35.247 UTC 78d3e88d-1051-4c9e-a1ca-e328296920b1 2013-12-20 12:54:52.22 UTC 6d9b18d8-d7c4-4b82-b62d-99564eae080c 2013-06-20 15:46:33.623 UTC e8c5e31c-7e92-44ec-bcda-6567fea6030b 2013-12-04 11:57:56.534 UTC c5490cfd-6edc-4a98-9707-0156b575bc8f 2013-02-20 08:09:23.860 UTC 89bccc8c-5469-44f8-9dae-145a71ec5eea 2013-12-11 14:31:01.7 UTC ef62c47c-e3cf-45e4-8bc2-9b5d5882fda3 2014-01-28 14:47:26.428 UTC 35ee1c5d-6955-4a1e-8125-dca8a1ce693a 2013-06-14 16:13:16.91 UTC c3075c76-212c-4c2d-98d1-e166ae1af6f9 2013-12-04 11:51:43.79 UTC 76c4ff35-0388-4e07-b94d-535dcee637ed 2013-03-28 11:24:32.626 UTC 2935fae0-9275-4e27-b416-777428d50b24 2013-12-13 11:24:03.54 UTC 9ffa91a8-761f-406c-8b88-076ee75eea27 2013-05-16 12:51:08.738 UTC aa13517d-37d5-40d2-ba8e-205246958513 2014-01-22 17:08:39.883 UTC 87a3fc88-51f3-435f-959f-b90c8bd55119 2013-05-17 12:40:02.751 UTC fbab0582-41eb-4f4a-bc43-044489c8ea11 2014-01-10 15:57:19.272 UTC 28272e3a-e84b-43b1-86d1-719387da9aa6 2013-02-20 09:36:45.90 UTC 2aebda18-1ea0-403a-a90c-2abaa925ad51 2013-06-06 14:29:34.741 UTC 2d106503-2ce8-416c-9adb-6436bcfa9e21 2014-01-22 15:22:14.3 UTC 52a0d7d1-4b59-4adf-b8bc-9ac99b9e283b 2014-01-22 20:43:28.243 UTC 3fe95ac3-fe41-4758-b4ea-03ecd83a123a 2013-05-16 13:07:21.5 UTC 495997c9-1ba0-4711-b6f8-548773933cd8 2013-03-28 09:14:07.619 UTC dbecbb79-2040-4889-b4ab-18277edb0fdb 2013-08-09 11:14:16.10 UTC 5dfb9d2c-95e6-415d-8c9f-847ec107140e 2013-02-19 16:37:16.674 UTC Workflow20Sentinel00DummyOutText_constantvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Ciao net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketellmessage0net.sf.taverna.t2.activitiesinteraction-activity1.0.4net.sf.taverna.t2.activities.interaction.InteractionActivity message 0 java.lang.String true title 0 java.lang.String true answer 0 0 tell VelocityTemplate false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemessage_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Convergence of MCMC reached! net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketellmessagemessage_valuevalueDummyOutText_constantvalue 844a0428-c2a3-43f5-8f4f-d6609f20cc40 2013-01-31 10:56:51.471 UTC ac938b2a-fe53-450b-8315-fd10b043ea40 2012-11-28 17:07:09.459 UTC 6be543cf-0a7e-4305-b7fc-1efaee8b413c 2012-11-28 17:08:36.500 UTC Workflow20Sentinel00DummyOutText_constantvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Ciao net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketellmessage0net.sf.taverna.t2.activitiesinteraction-activity1.0.4net.sf.taverna.t2.activities.interaction.InteractionActivity message 0 java.lang.String true title 0 java.lang.String true answer 0 0 tell VelocityTemplate false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemessage_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Convergence of MCMC not reached! net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketellmessagemessage_valuevalueDummyOutText_constantvalue d5174161-60fa-4f81-a3aa-1f90a18b96d5 2013-12-13 12:03:13.526 UTC 6be543cf-0a7e-4305-b7fc-1efaee8b413c 2012-11-28 17:08:36.500 UTC 844a0428-c2a3-43f5-8f4f-d6609f20cc40 2013-01-31 10:56:51.471 UTC ac938b2a-fe53-450b-8315-fd10b043ea40 2012-11-28 17:07:09.459 UTC