InterproScan_Example

Created: 2013-01-28 10:08:37 Last updated: 2013-01-30 13:26:43

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This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text, xml or png. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished.

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Authors (1)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (2)

Name	Description
sequence	a protein sequence in Fasta format
email	Requires a valid email address in order to execute services hosted at the EBI. The EBI asks for an email address so that they can contact you about: Problems with the service which affect your jobs. Scheduled maintenance which affects services you are using. Deprecation and retirement of a service you are using. If you use a fake email, the workflow may be cancelled before execution

Processors (13)

Name	Type	Description
run	wsdl	Wsdl http://www.ebi.ac.uk/Tools/services/soap/iprscan?wsdl Wsdl Operation run
run_input	xmlsplitter
run_input_2	xmlsplitter
run_output	xmlsplitter
Status	workflow
getResult	wsdl	Wsdl http://www.ebi.ac.uk/Tools/services/soap/iprscan?wsdl Wsdl Operation getResult
getResult_graphic	wsdl	Wsdl http://www.ebi.ac.uk/Tools/services/soap/iprscan?wsdl Wsdl Operation getResult
getResult_input	xmlsplitter
getResult_graphic_input	xmlsplitter
getResult_output	xmlsplitter
getResult_graphic_output	xmlsplitter
text	stringconstant	Value txt
visual_png	stringconstant	Value visual-png

Beanshells (0)

Outputs (3)

Name	Description
status_output	Reports the status of the asynchronous job
TextResults	Produces InterProScan matches to the protein query sequence in text format
Graphical_output	Produces a graphical reporesentation of InterProScan matches to the query protein sequence

Datalinks (17)

Source	Sink
run_input:output	run:parameters
run_input_2:output	run_input:parameters
email	run_input:email
sequence	run_input_2:sequence
run:parameters	run_output:input
run_output:jobId	Status:JobID
getResult_input:output	getResult:parameters
getResult_graphic_input:output	getResult_graphic:parameters
run_output:jobId	getResult_input:jobId
text:value	getResult_input:type
run_output:jobId	getResult_graphic_input:jobId
visual_png:value	getResult_graphic_input:type
getResult:parameters	getResult_output:input
getResult_graphic:parameters	getResult_graphic_output:input
Status:getStatus_output_status	status_output
getResult_output:output	TextResults
getResult_graphic_output:output	Graphical_output

Coordinations (2)

Controller	Target
Status	getResult_input
Status	getResult_graphic_input

Information Workflow Type

Taverna 2

Information Uploader

Katy Wolstencroft

Information License

All versions of this Workflow are licensed under:

Information Version 3 (latest) (of 3)

Information Credits (1)

(People/Groups)

Katy Wolstencroft

Information Attributions (0)

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None

Information Tags (4)

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Information Shared with Groups (1)

NARExamples

Information Featured In Packs (1)

Bioinformatics Workflow Examples

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Information Attributed By (0)

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None

Information Favourited By (0)

No one

Information Statistics

2589 viewings

1345 downloads

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Citations (0)

None

Version History

In chronological order:

InterproScan_Example

Created by Katy Wolstencroft on Monday 28 January 2013 10:08:37 (UTC)
InterproScan_Example

Created by Katy Wolstencroft on Tuesday 29 January 2013 12:07:44 (UTC)
InterproScan_Example

Created by Katy Wolstencroft on Wednesday 30 January 2013 13:26:43 (UTC)

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EBI_InterproScan_NewServices (2)

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This workflow performs an interproscan on provided sequencesThis workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text, xml or png. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.

Created: 2011-01-17 | Last updated: 2011-01-17

Credits: Katy Wolstencroft Hamish McWilliam Stian Soiland-Reyes

Attributions: EBI_InterProScan for Taverna 2 EBI_InterProScan for Taverna 2 EBI_InterProScan

InterproScan_Example

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Workflow Components

Wsdl

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Wsdl

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Wsdl

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Value

Value

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Other workflows that use similar services (8)